Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002547

Physical Location & Seq

Genomic Coordinates Reverse (-)

25625609 .. 25627145

Gene Structure 1537 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g32570.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGATCATGAAAATATTGACAGCTCTTGTTTTCTTCATCCTAGCCACACTTGTAGCAGCAACCAAATCTTCAGACGGTGCTAAATCGATATCCCACCAGATACATCTCCTCCGACCACAAACCGGTTCCGGTGGGAGACACATCCCCGGCGTTTCGTGTCTCAGCTGGCGACTGGGAGTGGAAACCCGCAATATCATTGACTGGACGACTGTTCCAGCTGCTTGTGAAGGCTATGTAGGGCACTACATGCTTGGCCACCAGTACCGAAAAGACTCGAAAGCTGTTACTTATGAGGCTTATCTCTACGCTAAGAGCCTGAATCTAACAGAGGATGACAAGAACTTGTGGATCTTTGATATAGATGAGACTAGCCTCTCCAATCTGCCTTACTATGTACACCATGGATTCGGGGTAGAAGTATATAATTCAACTACATTCGACGCATGGGTCTTGGAAGGCACAGCCCCAGCCTTGCCTGAAAGTCTTAAACTGTACAAGAAGTTATCGACTCTTGGAGTTAAGGTTGCATTCATAACTGGAAGAGGAGAGTCTCAAAGAAGTGTCACAGAAACCAATCTCAAGAAGGTTGGATATCACACTTGGGAAAAGCTCGTGCTGAAAGATTCATCTTACTCTGGCAAAACTGCAGTTGTATATAAATCAACTGAGAGAAAGAAGCTTGAAGAGAAGGGATATAGGATAATTGGGAACATTGGTGATCAATGGAGCGATCTCTTGGGAACAAATGTTGGCAACCGGACCTTCAAGATGCCTGATCCAATGTATTACATTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002213 GO:0003674 GO:0003824 GO:0003993 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0006793 GO:0006796 GO:0006950 GO:0006952 GO:0006979 GO:0008134 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009611 GO:0009625 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0022626 GO:0032991 GO:0042221 GO:0042578 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046688 GO:0050896 GO:0051704 GO:0051707 GO:1901700 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Acid_phosphat_B

Protein Analysis

266

Amino Acids

29.72

Weight (kDa)

8.96

Isoelectric Point (pI)

35.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acid_phosphat_B	PF03767	49 - 264	1.1e-87	HAD superfamily, subfamily IIIB (Acid phosphatase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002547)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g32551 FvH4_6g32560 FvH4_6g32560 FvH4_6g32570 FvH4_6g32570 FvH4_6g32570
malus_domestica	MD09G1200500.v1.1 MD09G1200900.v1.1 MD09G1201200.v1.1
prunus_persica	Prupe.3G057000_v2.0.a1 Prupe.3G057100_v2.0.a1
pyrus_communis	pycom09g11800 pycom17g19090
rosa_chinensis	RchiOBHm_Chr2g0140951 RchiOBHm_Chr2g0140961 RchiOBHm_Chr2g0140991 RchiOBHm_Chr2g0141021
rosa_laevigata	RLG00000019903 RLG00000019906 RLG00000019907 RLG00000019908
rosa_multiflora	Rmu_sc0003848.1_g000018 Rmu_sc0004769.1_g000010 Rmu_sc0004769.1_g000014
rosa_roxburghii	Rroxscaffold_2G00104300 Rroxscaffold_2G00104330 Rroxscaffold_2G00104340
rosa_rugosa	Rorug02G0365900 Rorug02G0366000 Rorug02G0366200
rosa_samantha	Rh2AG417300 Rh2AG417500 Rh2BG427400 Rh2CG403600 Rh2CG403800 Rh2DG436700 Rh2DG436900
rosa_wichuraiana	Rw2G034140 Rw2G034150 Rw2G034160 Rw2G034170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	446
AciI	CCGC	1 cut(s)	187
AclWI	GGATC	2 cut(s)	356, 770
AcoI	YGGCCR	1 cut(s)	253
AcuI	CTGAAG	1 cut(s)	54
AfaI	GTAC	3 cut(s)	263, 396, 494
AfiI	CCNNNNNNNGG	1 cut(s)	122
AgeI	ACCGGT	1 cut(s)	122
AgsI	TTSAA	3 cut(s)	429, 683, 766
AluBI	AGCT	6 cut(s)	23, 165, 218, 281, 610, 679
AluI	AGCT	6 cut(s)	23, 165, 218, 281, 610, 679
Alw26I	GTCTC	4 cut(s)	130, 164, 359, 555
AlwI	GGATC	2 cut(s)	356, 770
AoxI	GGCC	1 cut(s)	253
ApeKI	GCWGC	2 cut(s)	56, 218
AsiGI	ACCGGT	1 cut(s)	122
AspS9I	GGNCC	1 cut(s)	759
AsuC2I	CCSGG	1 cut(s)	147
AsuHPI	GGTGA	1 cut(s)	728
AvaII	GGWCC	1 cut(s)	759
BaeGI	GKGCMC	1 cut(s)	243
BalI	TGGCCA	1 cut(s)	255
BauI	CACGAG	1 cut(s)	611
BbvI	GCAGC	2 cut(s)	68, 205
BclI	TGATCA	2 cut(s)	3, 718
BcnI	CCSGG	1 cut(s)	147
BcoDI	GTCTC	4 cut(s)	130, 164, 359, 555
BfaI	CTAG	2 cut(s)	41, 369
BfmI	CTRYAG	1 cut(s)	645
BisI	GCNGC	2 cut(s)	57, 219
BlsI	GCNGC	2 cut(s)	58, 220
Bme1390I	CCNGG	1 cut(s)	147
Bme18I	GGWCC	1 cut(s)	759
BmgT120I	GGNCC	1 cut(s)	759
BmiI	GGNNCC	1 cut(s)	127
BmrFI	CCNGG	1 cut(s)	147
BmrI	ACTGGG	1 cut(s)	182
BmsI	GCATC	1 cut(s)	759
BmuI	ACTGGG	1 cut(s)	182
BpuEI	CTTGAG	1 cut(s)	563
BpuMI	CCSGG	1 cut(s)	147
Bsa29I	ATCGAT	1 cut(s)	86
BsaJI	CCNNGG	2 cut(s)	145, 400
BsaWI	WCCGGW	3 cut(s)	122, 128, 756
BsaXI	ACNNNNNCTCC	4 cut(s)	93, 123, 507, 537
Bsc4I	CCNNNNNNNGG	1 cut(s)	122
Bse118I	RCCGGY	1 cut(s)	122
Bse1I	ACTGG	4 cut(s)	177, 206, 259, 541
BseCI	ATCGAT	1 cut(s)	86
BseDI	CCNNGG	2 cut(s)	145, 400
BseGI	GGATG	3 cut(s)	36, 141, 337
BseLI	CCNNNNNNNGG	1 cut(s)	122
BseMII	CTCAG	2 cut(s)	175, 657
BseNI	ACTGG	4 cut(s)	177, 206, 259, 541
BseRI	GAGGAG	2 cut(s)	98, 558
BseSI	GKGCMC	1 cut(s)	243
BseXI	GCAGC	2 cut(s)	68, 205
BseYI	CCCAGC	1 cut(s)	466
BshFI	GGCC	1 cut(s)	255
BshTI	ACCGGT	1 cut(s)	122
BshVI	ATCGAT	1 cut(s)	86
BsiSI	CCGG	4 cut(s)	123, 129, 147, 757
BslI	CCNNNNNNNGG	1 cut(s)	122
BsmAI	GTCTC	4 cut(s)	130, 164, 359, 555
BsmI	GAATGC	1 cut(s)	527
BsnI	GGCC	1 cut(s)	255
Bsp1286I	GDGCHC	1 cut(s)	243
Bsp1407I	TGTACA	2 cut(s)	394, 492
Bsp143I	GATC	5 cut(s)	3, 348, 718, 730, 775
Bsp19I	CCATGG	1 cut(s)	400
BspACI	CCGC	1 cut(s)	187
BspANI	GGCC	1 cut(s)	255
BspCNI	CTCAG	2 cut(s)	174, 658
BspDI	ATCGAT	1 cut(s)	86
BspHI	TCATGA	1 cut(s)	6
BspLI	GGNNCC	1 cut(s)	127
BspMAI	CTGCAG	1 cut(s)	649
BspPI	GGATC	2 cut(s)	356, 770
BsrFI	RCCGGY	1 cut(s)	122
BsrGI	TGTACA	2 cut(s)	394, 492
BsrI	ACTGG	4 cut(s)	177, 206, 259, 541
BssAI	RCCGGY	1 cut(s)	122
BssECI	CCNNGG	2 cut(s)	145, 400
BssMI	GATC	5 cut(s)	3, 348, 718, 730, 775
BssSI	CACGAG	1 cut(s)	611
BssT1I	CCWWGG	1 cut(s)	400
Bst2BI	CACGAG	1 cut(s)	611
Bst4CI	ACNGT	3 cut(s)	77, 211, 492
Bst6I	CTCTTC	2 cut(s)	535, 678
BstAPI	GCANNNNNTGC	1 cut(s)	247
BstAUI	TGTACA	2 cut(s)	394, 492
BstC8I	GCNNGC	1 cut(s)	167
BstDEI	CTNAG	3 cut(s)	161, 309, 666
BstDSI	CCRYGG	1 cut(s)	400
BstF5I	GGATG	3 cut(s)	36, 141, 337
BstKTI	GATC	5 cut(s)	6, 351, 721, 733, 778
BstMAI	GTCTC	4 cut(s)	130, 164, 359, 555
BstMBI	GATC	5 cut(s)	3, 348, 718, 730, 775
BstMWI	GCNNNNNNNGC	1 cut(s)	247
BstNSI	RCATGY	1 cut(s)	250
BstSCI	CCNGG	1 cut(s)	145
BstSFI	CTRYAG	1 cut(s)	645
BstSLI	GKGCMC	1 cut(s)	243
BstV1I	GCAGC	2 cut(s)	68, 205
BstX2I	RGATCY	1 cut(s)	348
BstYI	RGATCY	1 cut(s)	348
Bsu15I	ATCGAT	1 cut(s)	86
BsuRI	GGCC	1 cut(s)	255
BsuTUI	ATCGAT	1 cut(s)	86
BtgI	CCRYGG	1 cut(s)	400
BtsCI	GGATG	3 cut(s)	36, 141, 337
Cac8I	GCNNGC	1 cut(s)	167
CciI	TCATGA	1 cut(s)	6
Cfr10I	RCCGGY	1 cut(s)	122
Cfr13I	GGNCC	1 cut(s)	759
ClaI	ATCGAT	1 cut(s)	86
CseI	GACGC	1 cut(s)	449
Csp6I	GTAC	3 cut(s)	262, 395, 493
CspAI	ACCGGT	1 cut(s)	122
CviAII	CATG	4 cut(s)	7, 247, 401, 444
CviQI	GTAC	3 cut(s)	262, 395, 493
DdeI	CTNAG	3 cut(s)	161, 309, 666
DpnI	GATC	5 cut(s)	5, 350, 720, 732, 777
DpnII	GATC	5 cut(s)	3, 348, 718, 730, 775
DrdI	GACNNNNNNGTC	1 cut(s)	446
DseDI	GACNNNNNNGTC	1 cut(s)	446
EaeI	YGGCCR	1 cut(s)	253
Eam1104I	CTCTTC	2 cut(s)	535, 678
EarI	CTCTTC	2 cut(s)	535, 678
Eco130I	CCWWGG	1 cut(s)	400
Eco32I	GATATC	2 cut(s)	90, 593
Eco47I	GGWCC	1 cut(s)	759
Eco57I	CTGAAG	1 cut(s)	54
EcoRV	GATATC	2 cut(s)	90, 593
EcoT14I	CCWWGG	1 cut(s)	400
ErhI	CCWWGG	1 cut(s)	400
FaeI	CATG	4 cut(s)	10, 250, 404, 447
FatI	CATG	4 cut(s)	6, 246, 400, 443
FauI	CCCGC	1 cut(s)	194
FbaI	TGATCA	2 cut(s)	3, 718
Fnu4HI	GCNGC	2 cut(s)	57, 219
FokI	GGATG	3 cut(s)	23, 128, 344
Fsp4HI	GCNGC	2 cut(s)	57, 219
FspBI	CTAG	2 cut(s)	41, 369
GluI	GCNGC	2 cut(s)	57, 219
GsaI	CCCAGC	1 cut(s)	470
HaeIII	GGCC	1 cut(s)	255
HapII	CCGG	4 cut(s)	123, 129, 147, 757
HgaI	GACGC	1 cut(s)	449
Hin1II	CATG	4 cut(s)	10, 250, 404, 447
HindIII	AAGCTT	1 cut(s)	677
HinfI	GANTC	6 cut(s)	272, 319, 405, 508, 548, 623
HpaII	CCGG	4 cut(s)	123, 129, 147, 757
HphI	GGTGA	1 cut(s)	728
Hpy166II	GTNNAC	1 cut(s)	397
Hpy188I	TCNGA	2 cut(s)	73, 113
Hpy188III	TCNNGA	3 cut(s)	7, 580, 766
Hpy8I	GTNNAC	1 cut(s)	397
Hpy99I	CGWCG	1 cut(s)	443
HpyAV	CCTTC	5 cut(s)	221, 449, 577, 682, 772
HpyCH4III	ACNGT	3 cut(s)	77, 211, 492
HpyCH4V	TGCA	2 cut(s)	527, 647
HpyF10VI	GCNNNNNNNGC	1 cut(s)	247
HpyF3I	CTNAG	3 cut(s)	161, 309, 666
Hsp92II	CATG	4 cut(s)	10, 250, 404, 447
Ksp22I	TGATCA	2 cut(s)	3, 718
Kzo9I	GATC	5 cut(s)	3, 348, 718, 730, 775
LmnI	GCTCC	1 cut(s)	726
Lsp1109I	GCAGC	2 cut(s)	68, 205
LweI	GCATC	1 cut(s)	759
MaeI	CTAG	2 cut(s)	41, 369
MaeIII	GTNAC	2 cut(s)	283, 562
MalI	GATC	5 cut(s)	5, 350, 720, 732, 777
MboI	GATC	5 cut(s)	3, 348, 718, 730, 775
MboII	GAAGA	4 cut(s)	25, 60, 552, 695
MflI	RGATCY	1 cut(s)	348
MhlI	GDGCHC	1 cut(s)	243
MlsI	TGGCCA	1 cut(s)	255
MluCI	AATT	2 cut(s)	424, 702
MluNI	TGGCCA	1 cut(s)	255
MlyI	GAGTC	3 cut(s)	266, 502, 557
MmeI	TCCRAC	2 cut(s)	136, 568
MnlI	CCTC	5 cut(s)	119, 286, 322, 383, 536
Mox20I	TGGCCA	1 cut(s)	255
MscI	TGGCCA	1 cut(s)	255
MseI	TTAA	2 cut(s)	486, 519
Msp20I	TGGCCA	1 cut(s)	255
MspA1I	CMGCKG	2 cut(s)	165, 218
MspI	CCGG	4 cut(s)	123, 129, 147, 757
MspR9I	CCNGG	1 cut(s)	147
Mva1269I	GAATGC	1 cut(s)	527
MwoI	GCNNNNNNNGC	1 cut(s)	247
NciI	CCSGG	1 cut(s)	147
NcoI	CCATGG	1 cut(s)	400
NdeII	GATC	5 cut(s)	3, 348, 718, 730, 775
NlaIII	CATG	4 cut(s)	10, 250, 404, 447
NlaIV	GGNNCC	1 cut(s)	127
NmuCI	GTSAC	1 cut(s)	562
NspI	RCATGY	1 cut(s)	250
PagI	TCATGA	1 cut(s)	6
PctI	GAATGC	1 cut(s)	527
PfeI	GAWTC	3 cut(s)	319, 405, 623
PinAI	ACCGGT	1 cut(s)	122
PkrI	GCNGC	2 cut(s)	58, 220
PleI	GAGTC	3 cut(s)	266, 502, 556
PpsI	GAGTC	3 cut(s)	266, 502, 556
PspFI	CCCAGC	1 cut(s)	466
PspN4I	GGNNCC	1 cut(s)	127
PspPI	GGNCC	1 cut(s)	759
PstI	CTGCAG	1 cut(s)	649
PsuI	RGATCY	1 cut(s)	348
PvuII	CAGCTG	2 cut(s)	165, 218
RsaI	GTAC	3 cut(s)	263, 396, 494
RsaNI	GTAC	3 cut(s)	262, 395, 493
SaqAI	TTAA	2 cut(s)	486, 519
SatI	GCNGC	2 cut(s)	57, 219
Sau3AI	GATC	5 cut(s)	3, 348, 718, 730, 775
Sau96I	GGNCC	1 cut(s)	759
SchI	GAGTC	3 cut(s)	266, 502, 557
ScrFI	CCNGG	1 cut(s)	147
SduI	GDGCHC	1 cut(s)	243
SetI	ASST	9 cut(s)	25, 167, 220, 283, 525, 588, 612, 681, 764
SfaNI	GCATC	1 cut(s)	759
SfcI	CTRYAG	1 cut(s)	645
SinI	GGWCC	1 cut(s)	759
SmlI	CTYRAG	1 cut(s)	578
SmoI	CTYRAG	1 cut(s)	578
Sse9I	AATT	2 cut(s)	424, 702
SsiI	CCGC	1 cut(s)	187
SspI	AATATT	1 cut(s)	15
SspMI	CTAG	2 cut(s)	41, 369
StyD4I	CCNGG	1 cut(s)	145
StyI	CCWWGG	1 cut(s)	400
TaaI	ACNGT	3 cut(s)	77, 211, 492
TaqI	TCGA	4 cut(s)	86, 275, 438, 506
TasI	AATT	2 cut(s)	424, 702
TatI	WGTACW	2 cut(s)	394, 492
TfiI	GAWTC	3 cut(s)	319, 405, 623
Tru1I	TTAA	2 cut(s)	486, 519
Tru9I	TTAA	2 cut(s)	486, 519
TseFI	GTSAC	1 cut(s)	562
TseI	GCWGC	2 cut(s)	56, 218
Tsp45I	GTSAC	1 cut(s)	562
TspDTI	ATGAA	4 cut(s)	23, 25, 520, 615
VpaK11BI	GGWCC	1 cut(s)	759
XceI	RCATGY	1 cut(s)	250
XspI	CTAG	2 cut(s)	41, 369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.