Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0002547

Physical Location & Seq

Genomic Coordinates Forward (+)

4045834 .. 4047444

Gene Structure 1611 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G057000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGAAATATTGCCAGTAGCACTAGTCTTCTTCCTTGCCACAATTGTATCAACCACCCAAGGTTATGAGCCAGTTCTAACCCACCATATCCATCTCCTCACGCCAAAAACGGGAGGAGCCAGAGGCAGCGTCCCCGGCTTGTCTTGCCTGAGTTGGCGGTTGGCGGTGGAAACTAACAACATTATTAACTGGAAGACTGTTCCAGCAGAATGTGAAGGGTATGTAGGGCACTACATGCTTGGCCACCAGTACAGAAAAGACTCAAAAGTGGTCACTAATGGGGCTTGGCTCTATGCTAAGAGTCTCAATCTTACAAAGGATGGCAAGAATGTGTGGGTGTTTGATATTGATGAAACTACACTCTCTAATCTACCTTATTATGCTGTTAACGGATTTGGGACTGAGTTATACAATGCCACTTCATTCGATGAATGGGTCTTAAAAGGCACAGCCCCAGCTTTGCCTGAGAGTCTCAAGCTCTACCAAAAGCTTTTGACACTTGGAGTCAAGGTTGTGTTCTTAACAGGAAGAGGAGAAGATAAAAGAAATGTCACAACCACCAATCTCAAAAATGTCGGATATCACACTTGGGAGAAGCTTATACTCAAGGGGTCTGCTTATACTGGGAAGACATCGTATGTGTATAAATCAGCAGAGAGAACTAAGCTTGTGAAGAGTGGATTTAGAATTATTGGAAATGCAGGTGATCAATGGAGCGATATCTTGGGGACAAATGTTGGCAATCGGACCTTCAAGTTGCCTGATCCAATGTATTACATTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002213 GO:0003674 GO:0003824 GO:0003993 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0006793 GO:0006796 GO:0006950 GO:0006952 GO:0006979 GO:0008134 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009611 GO:0009625 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0022626 GO:0032991 GO:0042221 GO:0042578 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046688 GO:0050896 GO:0051704 GO:0051707 GO:1901700 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Acid_phosphat_B

Protein Analysis

262

Amino Acids

29.08

Weight (kDa)

9.2

Isoelectric Point (pI)

22.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002547)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g32551 FvH4_6g32560 FvH4_6g32560 FvH4_6g32570 FvH4_6g32570 FvH4_6g32570
malus_domestica	MD09G1200500.v1.1 MD09G1200900.v1.1 MD09G1201200.v1.1
prunus_persica	Prupe.3G057000_v2.0.a1 Prupe.3G057100_v2.0.a1
pyrus_communis	pycom09g11800 pycom17g19090
rosa_chinensis	RchiOBHm_Chr2g0140951 RchiOBHm_Chr2g0140961 RchiOBHm_Chr2g0140991 RchiOBHm_Chr2g0141021
rosa_laevigata	RLG00000019903 RLG00000019906 RLG00000019907 RLG00000019908
rosa_multiflora	Rmu_sc0003848.1_g000018 Rmu_sc0004769.1_g000010 Rmu_sc0004769.1_g000014
rosa_roxburghii	Rroxscaffold_2G00104300 Rroxscaffold_2G00104330 Rroxscaffold_2G00104340
rosa_rugosa	Rorug02G0365900 Rorug02G0366000 Rorug02G0366200
rosa_samantha	Rh2AG417300 Rh2AG417500 Rh2BG427400 Rh2CG403600 Rh2CG403800 Rh2DG436700 Rh2DG436900
rosa_wichuraiana	Rw2G034140 Rw2G034150 Rw2G034160 Rw2G034170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	692
Acc36I	ACCTGC	1 cut(s)	692
AciI	CCGC	2 cut(s)	157, 164
AclWI	GGATC	1 cut(s)	758
AcoI	YGGCCR	1 cut(s)	241
AfaI	GTAC	1 cut(s)	251
AfiI	CCNNNNNNNGG	1 cut(s)	110
AgsI	TTSAA	1 cut(s)	754
AhlI	ACTAGT	1 cut(s)	22
AluBI	AGCT	5 cut(s)	458, 478, 490, 598, 667
AluI	AGCT	5 cut(s)	458, 478, 490, 598, 667
Alw26I	GTCTC	2 cut(s)	308, 476
AlwI	GGATC	1 cut(s)	758
AoxI	GGCC	1 cut(s)	241
ApeKI	GCWGC	1 cut(s)	126
AspS9I	GGNCC	1 cut(s)	747
AsuC2I	CCSGG	1 cut(s)	135
AsuHPI	GGTGA	1 cut(s)	716
AvaII	GGWCC	1 cut(s)	747
BaeGI	GKGCMC	1 cut(s)	231
BaeI	ACNNNNGTAYC	2 cut(s)	30, 63
BalI	TGGCCA	1 cut(s)	243
BbsI	GAAGAC	3 cut(s)	19, 200, 635
BbvI	GCAGC	1 cut(s)	138
BccI	CCATC	2 cut(s)	99, 314
BclI	TGATCA	1 cut(s)	706
BcnI	CCSGG	1 cut(s)	135
BcoDI	GTCTC	2 cut(s)	308, 476
BcuI	ACTAGT	1 cut(s)	22
BfaI	CTAG	1 cut(s)	23
BfuAI	ACCTGC	1 cut(s)	692
BisI	GCNGC	1 cut(s)	127
BlsI	GCNGC	1 cut(s)	128
Bme1390I	CCNGG	1 cut(s)	135
Bme18I	GGWCC	1 cut(s)	747
BmgT120I	GGNCC	1 cut(s)	747
BmiI	GGNNCC	1 cut(s)	118
BmrFI	CCNGG	1 cut(s)	135
BmrI	ACTGGG	1 cut(s)	633
BmuI	ACTGGG	1 cut(s)	633
BpiI	GAAGAC	3 cut(s)	19, 200, 635
BpuEI	CTTGAG	2 cut(s)	458, 590
BpuMI	CCSGG	1 cut(s)	135
BsaJI	CCNNGG	2 cut(s)	58, 133
BsaXI	ACNNNNNCTCC	2 cut(s)	495, 525
Bsc4I	CCNNNNNNNGG	1 cut(s)	110
Bse1I	ACTGG	5 cut(s)	14, 71, 194, 247, 628
BseDI	CCNNGG	2 cut(s)	58, 133
BseGI	GGATG	1 cut(s)	325
BseLI	CCNNNNNNNGG	1 cut(s)	110
BseMII	CTCAG	3 cut(s)	140, 393, 456
BseNI	ACTGG	5 cut(s)	14, 71, 194, 247, 628
BseRI	GAGGAG	3 cut(s)	86, 129, 546
BseSI	GKGCMC	1 cut(s)	231
BseXI	GCAGC	1 cut(s)	138
BseYI	CCCAGC	1 cut(s)	454
BshFI	GGCC	1 cut(s)	243
BsiSI	CCGG	1 cut(s)	135
BslFI	GGGAC	3 cut(s)	116, 412, 742
BslI	CCNNNNNNNGG	1 cut(s)	110
BsmAI	GTCTC	2 cut(s)	308, 476
BsmFI	GGGAC	3 cut(s)	116, 412, 742
BsnI	GGCC	1 cut(s)	243
Bsp1286I	GDGCHC	1 cut(s)	231
Bsp143I	GATC	2 cut(s)	706, 763
BspACI	CCGC	2 cut(s)	157, 164
BspANI	GGCC	1 cut(s)	243
BspCNI	CTCAG	3 cut(s)	141, 394, 457
BspLI	GGNNCC	1 cut(s)	118
BspMI	ACCTGC	1 cut(s)	692
BspPI	GGATC	1 cut(s)	758
BsrI	ACTGG	5 cut(s)	14, 71, 194, 247, 628
BssECI	CCNNGG	2 cut(s)	58, 133
BssMI	GATC	2 cut(s)	706, 763
BssT1I	CCWWGG	1 cut(s)	58
Bst4CI	ACNGT	1 cut(s)	199
Bst6I	CTCTTC	2 cut(s)	523, 668
BstAPI	GCANNNNNTGC	1 cut(s)	235
BstDEI	CTNAG	5 cut(s)	149, 297, 402, 465, 663
BstF5I	GGATG	1 cut(s)	325
BstKTI	GATC	2 cut(s)	709, 766
BstMAI	GTCTC	2 cut(s)	308, 476
BstMBI	GATC	2 cut(s)	706, 763
BstMWI	GCNNNNNNNGC	3 cut(s)	135, 144, 235
BstNSI	RCATGY	1 cut(s)	238
BstSCI	CCNGG	1 cut(s)	133
BstSLI	GKGCMC	1 cut(s)	231
BstV1I	GCAGC	1 cut(s)	138
BstV2I	GAAGAC	3 cut(s)	19, 200, 635
BsuRI	GGCC	1 cut(s)	243
BtsCI	GGATG	1 cut(s)	325
BveI	ACCTGC	1 cut(s)	692
Cfr13I	GGNCC	1 cut(s)	747
CseI	GACGC	1 cut(s)	118
Csp6I	GTAC	1 cut(s)	250
CviAII	CATG	1 cut(s)	235
CviQI	GTAC	1 cut(s)	250
DdeI	CTNAG	5 cut(s)	149, 297, 402, 465, 663
DpnI	GATC	2 cut(s)	708, 765
DpnII	GATC	2 cut(s)	706, 763
EaeI	YGGCCR	1 cut(s)	241
Eam1104I	CTCTTC	2 cut(s)	523, 668
EarI	CTCTTC	2 cut(s)	523, 668
Eco130I	CCWWGG	1 cut(s)	58
Eco32I	GATATC	2 cut(s)	581, 721
Eco47I	GGWCC	1 cut(s)	747
EcoRV	GATATC	2 cut(s)	581, 721
EcoT14I	CCWWGG	1 cut(s)	58
ErhI	CCWWGG	1 cut(s)	58
FaeI	CATG	1 cut(s)	238
FaqI	GGGAC	3 cut(s)	116, 412, 742
FatI	CATG	1 cut(s)	234
FbaI	TGATCA	1 cut(s)	706
Fnu4HI	GCNGC	1 cut(s)	127
FokI	GGATG	1 cut(s)	332
Fsp4HI	GCNGC	1 cut(s)	127
FspBI	CTAG	1 cut(s)	23
GluI	GCNGC	1 cut(s)	127
GsaI	CCCAGC	1 cut(s)	458
HaeIII	GGCC	1 cut(s)	243
HapII	CCGG	1 cut(s)	135
HgaI	GACGC	1 cut(s)	118
Hin1II	CATG	1 cut(s)	238
HincII	GTYRAC	1 cut(s)	388
HindII	GTYRAC	1 cut(s)	388
HindIII	AAGCTT	3 cut(s)	488, 596, 665
HinfI	GANTC	4 cut(s)	260, 301, 469, 504
HpaI	GTTAAC	1 cut(s)	388
HpaII	CCGG	1 cut(s)	135
HphI	GGTGA	1 cut(s)	716
Hpy166II	GTNNAC	1 cut(s)	388
Hpy188I	TCNGA	2 cut(s)	578, 747
Hpy8I	GTNNAC	1 cut(s)	388
HpyAV	CCTTC	2 cut(s)	209, 760
HpyCH4III	ACNGT	1 cut(s)	199
HpyCH4V	TGCA	1 cut(s)	701
HpyF10VI	GCNNNNNNNGC	3 cut(s)	135, 144, 235
HpyF3I	CTNAG	5 cut(s)	149, 297, 402, 465, 663
Hsp92II	CATG	1 cut(s)	238
Ksp22I	TGATCA	1 cut(s)	706
KspAI	GTTAAC	1 cut(s)	388
Kzo9I	GATC	2 cut(s)	706, 763
LmnI	GCTCC	2 cut(s)	116, 714
Lsp1109I	GCAGC	1 cut(s)	138
MaeI	CTAG	1 cut(s)	23
MaeIII	GTNAC	2 cut(s)	271, 550
MalI	GATC	2 cut(s)	708, 765
MboI	GATC	2 cut(s)	706, 763
MboII	GAAGA	7 cut(s)	19, 22, 205, 540, 548, 640, 685
MfeI	CAATTG	1 cut(s)	42
MhlI	GDGCHC	1 cut(s)	231
MlsI	TGGCCA	1 cut(s)	243
MluCI	AATT	2 cut(s)	42, 687
MluNI	TGGCCA	1 cut(s)	243
MlyI	GAGTC	4 cut(s)	254, 310, 478, 513
MmeI	TCCRAC	1 cut(s)	556
MnlI	CCTC	4 cut(s)	107, 107, 116, 524
Mox20I	TGGCCA	1 cut(s)	243
MscI	TGGCCA	1 cut(s)	243
MseI	TTAA	4 cut(s)	186, 387, 440, 521
Msp20I	TGGCCA	1 cut(s)	243
MspI	CCGG	1 cut(s)	135
MspR9I	CCNGG	1 cut(s)	135
MunI	CAATTG	1 cut(s)	42
MwoI	GCNNNNNNNGC	3 cut(s)	135, 144, 235
NciI	CCSGG	1 cut(s)	135
NdeII	GATC	2 cut(s)	706, 763
NlaIII	CATG	1 cut(s)	238
NlaIV	GGNNCC	1 cut(s)	118
NmuCI	GTSAC	2 cut(s)	271, 550
NspI	RCATGY	1 cut(s)	238
PaqCI	CACCTGC	1 cut(s)	692
PkrI	GCNGC	1 cut(s)	128
PleI	GAGTC	4 cut(s)	254, 309, 477, 512
PpsI	GAGTC	4 cut(s)	254, 309, 477, 512
PspFI	CCCAGC	1 cut(s)	454
PspN4I	GGNNCC	1 cut(s)	118
PspPI	GGNCC	1 cut(s)	747
RsaI	GTAC	1 cut(s)	251
RsaNI	GTAC	1 cut(s)	250
SaqAI	TTAA	4 cut(s)	186, 387, 440, 521
SatI	GCNGC	1 cut(s)	127
Sau3AI	GATC	2 cut(s)	706, 763
Sau96I	GGNCC	1 cut(s)	747
SchI	GAGTC	4 cut(s)	254, 310, 478, 513
ScrFI	CCNGG	1 cut(s)	135
SduI	GDGCHC	1 cut(s)	231
SinI	GGWCC	1 cut(s)	747
SmlI	CTYRAG	2 cut(s)	473, 605
SmoI	CTYRAG	2 cut(s)	473, 605
SpeI	ACTAGT	1 cut(s)	22
Sse9I	AATT	2 cut(s)	42, 687
SsiI	CCGC	2 cut(s)	157, 164
SspI	AATATT	1 cut(s)	9
SspMI	CTAG	1 cut(s)	23
StyD4I	CCNGG	1 cut(s)	133
StyI	CCWWGG	1 cut(s)	58
TaaI	ACNGT	1 cut(s)	199
TaqI	TCGA	1 cut(s)	426
TasI	AATT	2 cut(s)	42, 687
TatI	WGTACW	1 cut(s)	249
Tru1I	TTAA	4 cut(s)	186, 387, 440, 521
Tru9I	TTAA	4 cut(s)	186, 387, 440, 521
TseFI	GTSAC	2 cut(s)	271, 550
TseI	GCWGC	1 cut(s)	126
Tsp45I	GTSAC	2 cut(s)	271, 550
TspDTI	ATGAA	3 cut(s)	366, 411, 444
TspGWI	ACGGA	1 cut(s)	405
VpaK11BI	GGWCC	1 cut(s)	747
XceI	RCATGY	1 cut(s)	238
XspI	CTAG	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.