Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0002547

Physical Location & Seq

Genomic Coordinates Reverse (-)

56030824 .. 56032227

Gene Structure 1404 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G034150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGCCTGAGCTGGACATCGTTGGCTGGACGACTGTTCCAGCTGTCTGTGAAGGCTATGTTGGGCACTACATGCTAGGCAACCAGTATAGAAAGGACTCGAGAGCTGTTACTAATGAGGCTTTGCTCTACGCTAAGAGCCTGAACCTTACAAAGGACGGCAAGAACTTGTGGGTCTTCGACATCGATGAGACTACTCTCTCCAATCTGCCTTATTATTCTCACCATGGATTCGGAGTAGAGGTATATAATTCCACTTCATTCGACGCCTGGGTCTTAGAAGGCACGGCCCCAGCTTTGCCTGAGAGTCTTAAACTGTACAATAAGTTATTGGCTCTTGGAATTAAGGTAGCATTCATAACTGGAAGAGGAATCTCTCAAAGAAGTGTCACAGAAATCAATCTCAAATACGTTGGATATCACACATGGGAAAAGCTTGTGCTAAAGAATTCATCTTATTCTGGTAACACATCTGCTGTGTATAAATCATCGGAGAGAAAGGAACTTGAAAAGAGTGGATATAGAATAATTGGGAACATTGGTGATCAATGGAGCGATCTCTTAGGCACAAATGTGGGCGACCGGACCTTCAAGTTGCCTGATCCAATGTATTACATTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002213 GO:0003674 GO:0003824 GO:0003993 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0006793 GO:0006796 GO:0006950 GO:0006952 GO:0006979 GO:0008134 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009611 GO:0009625 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0022626 GO:0032991 GO:0042221 GO:0042578 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046688 GO:0050896 GO:0051704 GO:0051707 GO:1901700 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Acid_phosphat_B

Protein Analysis

206

Amino Acids

23.14

Weight (kDa)

6.43

Isoelectric Point (pI)

24.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acid_phosphat_B	PF03767	5 - 205	4.6e-76	HAD superfamily, subfamily IIIB (Acid phosphatase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002547)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g32551 FvH4_6g32560 FvH4_6g32560 FvH4_6g32570 FvH4_6g32570 FvH4_6g32570
malus_domestica	MD09G1200500.v1.1 MD09G1200900.v1.1 MD09G1201200.v1.1
prunus_persica	Prupe.3G057000_v2.0.a1 Prupe.3G057100_v2.0.a1
pyrus_communis	pycom09g11800 pycom17g19090
rosa_chinensis	RchiOBHm_Chr2g0140951 RchiOBHm_Chr2g0140961 RchiOBHm_Chr2g0140991 RchiOBHm_Chr2g0141021
rosa_laevigata	RLG00000019903 RLG00000019906 RLG00000019907 RLG00000019908
rosa_multiflora	Rmu_sc0003848.1_g000018 Rmu_sc0004769.1_g000010 Rmu_sc0004769.1_g000014
rosa_roxburghii	Rroxscaffold_2G00104300 Rroxscaffold_2G00104330 Rroxscaffold_2G00104340
rosa_rugosa	Rorug02G0365900 Rorug02G0366000 Rorug02G0366200
rosa_samantha	Rh2AG417300 Rh2AG417500 Rh2BG427400 Rh2CG403600 Rh2CG403800 Rh2DG436700 Rh2DG436900
rosa_wichuraiana	Rw2G034140 Rw2G034150 Rw2G034160 Rw2G034170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	269
AclWI	GGATC	1 cut(s)	593
AcsI	RAATTY	1 cut(s)	445
AcyI	GRCGYC	1 cut(s)	264
AfaI	GTAC	1 cut(s)	317
AfiI	CCNNNNNNNGG	1 cut(s)	151
AgsI	TTSAA	2 cut(s)	506, 589
AjnI	CCWGG	1 cut(s)	266
AjuI	GAANNNNNNNTTGG	2 cut(s)	42, 74
AleI	CACNNNNGTG	1 cut(s)	569
AluBI	AGCT	5 cut(s)	10, 41, 104, 293, 433
AluI	AGCT	5 cut(s)	10, 41, 104, 293, 433
Alw26I	GTCTC	1 cut(s)	182
AlwI	GGATC	1 cut(s)	593
Ama87I	CYCGRG	1 cut(s)	97
AoxI	GGCC	1 cut(s)	285
ApoI	RAATTY	1 cut(s)	445
AspS9I	GGNCC	2 cut(s)	286, 582
AsuHPI	GGTGA	2 cut(s)	212, 551
AvaI	CYCGRG	1 cut(s)	97
AvaII	GGWCC	1 cut(s)	582
BaeGI	GKGCMC	1 cut(s)	66
BbsI	GAAGAC	1 cut(s)	166
BceAI	ACGGC	2 cut(s)	172, 300
BciT130I	CCWGG	1 cut(s)	268
BclI	TGATCA	1 cut(s)	541
BcoDI	GTCTC	1 cut(s)	182
BfaI	CTAG	1 cut(s)	74
Bme1390I	CCNGG	1 cut(s)	268
Bme18I	GGWCC	1 cut(s)	582
BmeT110I	CYCGRG	1 cut(s)	97
BmgT120I	GGNCC	2 cut(s)	286, 582
BmiI	GGNNCC	1 cut(s)	288
BmrFI	CCNGG	1 cut(s)	268
BpiI	GAAGAC	1 cut(s)	166
Bpu10I	CCTNAGC	1 cut(s)	6
Bsa29I	ATCGAT	1 cut(s)	183
BsaHI	GRCGYC	1 cut(s)	264
BsaJI	CCNNGG	2 cut(s)	223, 267
BsaWI	WCCGGW	1 cut(s)	579
BsaXI	ACNNNNNCTCC	2 cut(s)	225, 255
Bsc4I	CCNNNNNNNGG	1 cut(s)	151
Bse1I	ACTGG	2 cut(s)	82, 364
BseBI	CCWGG	1 cut(s)	268
BseCI	ATCGAT	1 cut(s)	183
BseDI	CCNNGG	2 cut(s)	223, 267
BseLI	CCNNNNNNNGG	1 cut(s)	151
BseMII	CTCAG	1 cut(s)	291
BseNI	ACTGG	2 cut(s)	82, 364
BseSI	GKGCMC	1 cut(s)	66
BseYI	CCCAGC	1 cut(s)	289
Bsh1285I	CGRYCG	1 cut(s)	580
BshFI	GGCC	1 cut(s)	287
BshVI	ATCGAT	1 cut(s)	183
BsiEI	CGRYCG	1 cut(s)	580
BsiHKCI	CYCGRG	1 cut(s)	97
BsiSI	CCGG	1 cut(s)	580
BslI	CCNNNNNNNGG	1 cut(s)	151
BsmAI	GTCTC	1 cut(s)	182
BsmI	GAATGC	1 cut(s)	350
BsnI	GGCC	1 cut(s)	287
BsoBI	CYCGRG	1 cut(s)	97
Bsp1286I	GDGCHC	1 cut(s)	66
Bsp1407I	TGTACA	1 cut(s)	315
Bsp143I	GATC	3 cut(s)	541, 553, 598
Bsp19I	CCATGG	1 cut(s)	223
BspANI	GGCC	1 cut(s)	287
BspCNI	CTCAG	1 cut(s)	292
BspDI	ATCGAT	1 cut(s)	183
BspLI	GGNNCC	1 cut(s)	288
BspPI	GGATC	1 cut(s)	593
BsrGI	TGTACA	1 cut(s)	315
BsrI	ACTGG	2 cut(s)	82, 364
BssECI	CCNNGG	2 cut(s)	223, 267
BssMI	GATC	3 cut(s)	541, 553, 598
BssNI	GRCGYC	1 cut(s)	264
BssT1I	CCWWGG	1 cut(s)	223
Bst2UI	CCWGG	1 cut(s)	268
Bst4CI	ACNGT	2 cut(s)	34, 315
Bst6I	CTCTTC	1 cut(s)	358
BstACI	GRCGYC	1 cut(s)	264
BstAPI	GCANNNNNTGC	1 cut(s)	70
BstAUI	TGTACA	1 cut(s)	315
BstDEI	CTNAG	5 cut(s)	6, 132, 274, 300, 559
BstDSI	CCRYGG	1 cut(s)	223
BstENI	CCTNNNNNAGG	1 cut(s)	149
BstKTI	GATC	3 cut(s)	544, 556, 601
BstMAI	GTCTC	1 cut(s)	182
BstMBI	GATC	3 cut(s)	541, 553, 598
BstMCI	CGRYCG	1 cut(s)	580
BstMWI	GCNNNNNNNGC	1 cut(s)	70
BstNI	CCWGG	1 cut(s)	268
BstNSI	RCATGY	1 cut(s)	73
BstSCI	CCNGG	1 cut(s)	266
BstSLI	GKGCMC	1 cut(s)	66
BstV2I	GAAGAC	1 cut(s)	166
Bsu15I	ATCGAT	1 cut(s)	183
BsuRI	GGCC	1 cut(s)	287
BsuTUI	ATCGAT	1 cut(s)	183
BtgI	CCRYGG	1 cut(s)	223
Cfr13I	GGNCC	2 cut(s)	286, 582
ClaI	ATCGAT	1 cut(s)	183
CseI	GACGC	1 cut(s)	272
Csp6I	GTAC	1 cut(s)	316
CviAII	CATG	3 cut(s)	70, 224, 423
CviQI	GTAC	1 cut(s)	316
DdeI	CTNAG	5 cut(s)	6, 132, 274, 300, 559
DpnI	GATC	3 cut(s)	543, 555, 600
DpnII	GATC	3 cut(s)	541, 553, 598
DrdI	GACNNNNNNGTC	1 cut(s)	269
DseDI	GACNNNNNNGTC	1 cut(s)	269
Eam1104I	CTCTTC	1 cut(s)	358
EarI	CTCTTC	1 cut(s)	358
Eco130I	CCWWGG	1 cut(s)	223
Eco32I	GATATC	1 cut(s)	416
Eco47I	GGWCC	1 cut(s)	582
Eco88I	CYCGRG	1 cut(s)	97
EcoNI	CCTNNNNNAGG	1 cut(s)	149
EcoRI	GAATTC	1 cut(s)	445
EcoRII	CCWGG	1 cut(s)	266
EcoRV	GATATC	1 cut(s)	416
EcoT14I	CCWWGG	1 cut(s)	223
ErhI	CCWWGG	1 cut(s)	223
FaeI	CATG	3 cut(s)	73, 227, 426
FatI	CATG	3 cut(s)	69, 223, 422
FbaI	TGATCA	1 cut(s)	541
FspBI	CTAG	1 cut(s)	74
GsaI	CCCAGC	1 cut(s)	293
HaeIII	GGCC	1 cut(s)	287
HapII	CCGG	1 cut(s)	580
HgaI	GACGC	1 cut(s)	272
Hin1I	GRCGYC	1 cut(s)	264
Hin1II	CATG	3 cut(s)	73, 227, 426
HindIII	AAGCTT	1 cut(s)	431
HinfI	GANTC	4 cut(s)	95, 228, 304, 369
HpaII	CCGG	1 cut(s)	580
HphI	GGTGA	2 cut(s)	212, 551
Hpy188I	TCNGA	2 cut(s)	233, 490
Hpy188III	TCNNGA	1 cut(s)	99
Hpy99I	CGWCG	1 cut(s)	266
HpyAV	CCTTC	3 cut(s)	44, 272, 595
HpyCH4III	ACNGT	2 cut(s)	34, 315
HpyCH4IV	ACGT	1 cut(s)	408
HpyF10VI	GCNNNNNNNGC	1 cut(s)	70
HpyF3I	CTNAG	5 cut(s)	6, 132, 274, 300, 559
HpySE526I	ACGT	1 cut(s)	408
Hsp92I	GRCGYC	1 cut(s)	264
Hsp92II	CATG	3 cut(s)	73, 227, 426
Ksp22I	TGATCA	1 cut(s)	541
Kzo9I	GATC	3 cut(s)	541, 553, 598
LmnI	GCTCC	1 cut(s)	549
MaeI	CTAG	1 cut(s)	74
MaeII	ACGT	1 cut(s)	408
MaeIII	GTNAC	3 cut(s)	106, 385, 461
MalI	GATC	3 cut(s)	543, 555, 600
MboI	GATC	3 cut(s)	541, 553, 598
MboII	GAAGA	2 cut(s)	166, 375
MhlI	GDGCHC	1 cut(s)	66
MluCI	AATT	4 cut(s)	247, 339, 445, 525
MlyI	GAGTC	2 cut(s)	89, 313
MmeI	TCCRAC	1 cut(s)	391
MnlI	CCTC	3 cut(s)	109, 232, 359
MseI	TTAA	2 cut(s)	309, 342
MslI	CAYNNNNRTG	1 cut(s)	569
MspA1I	CMGCKG	1 cut(s)	41
MspI	CCGG	1 cut(s)	580
MspR9I	CCNGG	1 cut(s)	268
Mva1269I	GAATGC	1 cut(s)	350
MvaI	CCWGG	1 cut(s)	268
MwoI	GCNNNNNNNGC	1 cut(s)	70
NcoI	CCATGG	1 cut(s)	223
NdeII	GATC	3 cut(s)	541, 553, 598
NlaIII	CATG	3 cut(s)	73, 227, 426
NlaIV	GGNNCC	1 cut(s)	288
NmuCI	GTSAC	1 cut(s)	385
NspI	RCATGY	1 cut(s)	73
OliI	CACNNNNGTG	1 cut(s)	569
PaeR7I	CTCGAG	1 cut(s)	97
PctI	GAATGC	1 cut(s)	350
PfeI	GAWTC	2 cut(s)	228, 369
PleI	GAGTC	2 cut(s)	89, 312
PpsI	GAGTC	2 cut(s)	89, 312
Psp6I	CCWGG	1 cut(s)	266
PspFI	CCCAGC	1 cut(s)	289
PspGI	CCWGG	1 cut(s)	266
PspN4I	GGNNCC	1 cut(s)	288
PspPI	GGNCC	2 cut(s)	286, 582
PvuII	CAGCTG	1 cut(s)	41
RsaI	GTAC	1 cut(s)	317
RsaNI	GTAC	1 cut(s)	316
RseI	CAYNNNNRTG	1 cut(s)	569
SaqAI	TTAA	2 cut(s)	309, 342
Sau3AI	GATC	3 cut(s)	541, 553, 598
Sau96I	GGNCC	2 cut(s)	286, 582
SchI	GAGTC	2 cut(s)	89, 313
ScrFI	CCNGG	1 cut(s)	268
SduI	GDGCHC	1 cut(s)	66
Sfr274I	CTCGAG	1 cut(s)	97
SinI	GGWCC	1 cut(s)	582
SlaI	CTCGAG	1 cut(s)	97
SmiMI	CAYNNNNRTG	1 cut(s)	569
SmlI	CTYRAG	1 cut(s)	97
SmoI	CTYRAG	1 cut(s)	97
Sse9I	AATT	4 cut(s)	247, 339, 445, 525
SspMI	CTAG	1 cut(s)	74
StyD4I	CCNGG	1 cut(s)	266
StyI	CCWWGG	1 cut(s)	223
TaaI	ACNGT	2 cut(s)	34, 315
TaiI	ACGT	1 cut(s)	411
TaqI	TCGA	4 cut(s)	98, 177, 183, 261
TasI	AATT	4 cut(s)	247, 339, 445, 525
TatI	WGTACW	1 cut(s)	315
TfiI	GAWTC	2 cut(s)	228, 369
Tru1I	TTAA	2 cut(s)	309, 342
Tru9I	TTAA	2 cut(s)	309, 342
TseFI	GTSAC	1 cut(s)	385
Tsp45I	GTSAC	1 cut(s)	385
TspDTI	ATGAA	3 cut(s)	246, 343, 438
VpaK11BI	GGWCC	1 cut(s)	582
XagI	CCTNNNNNAGG	1 cut(s)	149
XapI	RAATTY	1 cut(s)	445
XceI	RCATGY	1 cut(s)	73
XhoI	CTCGAG	1 cut(s)	97
XspI	CTAG	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.