Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002547

Physical Location & Seq

Genomic Coordinates Reverse (-)

25619213 .. 25621046

Gene Structure 1834 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g32560.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGATGCACAAATTAGCCGGCAATACTGATCAACACCAGTTTCCTCTCCTACCAAGAAGTTTCCTCTCCTACCAAGAAGATAAACAAAACAGATACATCATGAAAATGTTGCCACTTCTACTCTTCTTCCTCCTAACCACAACTGTAGCAACAACCCAAGCTTCATCAGATGGAGCTATATCCCGCCAGATTCATCTCCTCCGGCCACAAACCGGTTCCCAGGGGAGGCACGTCCCCGGCATTTCATGTATGAGCTGGAGACTGGGCGTCGAAACCCACAACATCGTTGGCTGGACGACTATTCCGGCTGCCTGTGAACGATATGTGGGAAACTACATGCTAGGCCACCAGTACAGACAGGACTCGAGAGCTGTTACTAATGAGGCTTTGCTCTACGCTAAGAGCCTGAACCTGACAAAGGACGGCAAGAACTTGTGGGTCTTCGACATAGATGAGACTAGTCTCTCCAATCTGCCTTATTATGCTCACCATGGATTCGGGGTAGAGTTATATAATTCCACTGCATTCAACGCCTGGGTCTTAGAAGGCAAAGCCCCAGCTTTGCCGGAGAGTCTTAAACTGTACAACAAGTTATTGGCTCTTGGAATCAAGGTTGCGTTCATAACTGGAAGAGGAGAATCTCAAAGAAGTGTGACAGAAATCAATCTCAGATATGTTGGATACCTCACTTGGGAAAAGCTCATTCTAAAGAATTCATCTTATACTGGTAACACATCGGTTGTGTATAAATCATCCGAGAAAAAGAAACTTGAAGAGAGTGGATATAGAATAATTGGGAACATTGGTGATCAGTGGAGCGATCTCTTGGGAACAAATGTGGGCGATCGGACCTTCAAGTTGCCTGATCCAATGTATTACATTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002213 GO:0003674 GO:0003824 GO:0003993 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0006793 GO:0006796 GO:0006950 GO:0006952 GO:0006979 GO:0008134 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009611 GO:0009625 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0022626 GO:0032991 GO:0042221 GO:0042578 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046688 GO:0050896 GO:0051704 GO:0051707 GO:1901700 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Acid_phosphat_B

Protein Analysis

296

Amino Acids

33.36

Weight (kDa)

9.11

Isoelectric Point (pI)

40.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acid_phosphat_B	PF03767	79 - 237	1.3e-57	HAD superfamily, subfamily IIIB (Acid phosphatase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002547)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g32551 FvH4_6g32560 FvH4_6g32560 FvH4_6g32570 FvH4_6g32570 FvH4_6g32570
malus_domestica	MD09G1200500.v1.1 MD09G1200900.v1.1 MD09G1201200.v1.1
prunus_persica	Prupe.3G057000_v2.0.a1 Prupe.3G057100_v2.0.a1
pyrus_communis	pycom09g11800 pycom17g19090
rosa_chinensis	RchiOBHm_Chr2g0140951 RchiOBHm_Chr2g0140961 RchiOBHm_Chr2g0140991 RchiOBHm_Chr2g0141021
rosa_laevigata	RLG00000019903 RLG00000019906 RLG00000019907 RLG00000019908
rosa_multiflora	Rmu_sc0003848.1_g000018 Rmu_sc0004769.1_g000010 Rmu_sc0004769.1_g000014
rosa_roxburghii	Rroxscaffold_2G00104300 Rroxscaffold_2G00104330 Rroxscaffold_2G00104340
rosa_rugosa	Rorug02G0365900 Rorug02G0366000 Rorug02G0366200
rosa_samantha	Rh2AG417300 Rh2AG417500 Rh2BG427400 Rh2CG403600 Rh2CG403800 Rh2DG436700 Rh2DG436900
rosa_wichuraiana	Rw2G034140 Rw2G034150 Rw2G034160 Rw2G034170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	184
AclWI	GGATC	1 cut(s)	860
AcoI	YGGCCR	1 cut(s)	203
AcsI	RAATTY	1 cut(s)	712
AcyI	GRCGYC	1 cut(s)	267
AfaI	GTAC	2 cut(s)	353, 584
AfiI	CCNNNNNNNGG	4 cut(s)	212, 225, 418, 691
AgeI	ACCGGT	1 cut(s)	212
AgsI	TTSAA	3 cut(s)	529, 773, 856
AhdI	GACNNNNNGTC	1 cut(s)	266
AhlI	ACTAGT	1 cut(s)	458
AjiI	CACGTC	1 cut(s)	232
AjnI	CCWGG	2 cut(s)	219, 533
AluBI	AGCT	6 cut(s)	161, 176, 255, 371, 560, 700
AluI	AGCT	6 cut(s)	161, 176, 255, 371, 560, 700
Alw26I	GTCTC	3 cut(s)	253, 449, 467
AlwI	GGATC	1 cut(s)	860
Ama87I	CYCGRG	1 cut(s)	364
AoxI	GGCC	2 cut(s)	203, 343
ApeKI	GCWGC	1 cut(s)	308
ApoI	RAATTY	1 cut(s)	712
AsiGI	ACCGGT	1 cut(s)	212
AspS9I	GGNCC	1 cut(s)	849
AsuC2I	CCSGG	1 cut(s)	237
AsuHPI	GGTGA	2 cut(s)	479, 818
AvaI	CYCGRG	1 cut(s)	364
AvaII	GGWCC	1 cut(s)	849
BbsI	GAAGAC	1 cut(s)	433
BbvI	GCAGC	1 cut(s)	295
BccI	CCATC	1 cut(s)	164
BceAI	ACGGC	1 cut(s)	439
BciT130I	CCWGG	2 cut(s)	221, 535
BciVI	GTATCC	1 cut(s)	674
BclI	TGATCA	2 cut(s)	28, 808
BcnI	CCSGG	1 cut(s)	237
BcoDI	GTCTC	3 cut(s)	253, 449, 467
BcuI	ACTAGT	1 cut(s)	458
BfaI	CTAG	2 cut(s)	341, 459
BfmI	CTRYAG	1 cut(s)	144
BfuI	GTATCC	1 cut(s)	674
BisI	GCNGC	1 cut(s)	309
BlsI	GCNGC	1 cut(s)	310
Bme1390I	CCNGG	3 cut(s)	221, 237, 535
Bme18I	GGWCC	1 cut(s)	849
BmeRI	GACNNNNNGTC	1 cut(s)	266
BmeT110I	CYCGRG	1 cut(s)	364
BmgBI	CACGTC	1 cut(s)	232
BmgT120I	GGNCC	1 cut(s)	849
BmiI	GGNNCC	1 cut(s)	217
BmrFI	CCNGG	3 cut(s)	221, 237, 535
BmrI	ACTGGG	1 cut(s)	272
BmuI	ACTGGG	1 cut(s)	272
BpiI	GAAGAC	1 cut(s)	433
BpmI	CTGGAG	1 cut(s)	277
BpuMI	CCSGG	1 cut(s)	237
BsaHI	GRCGYC	1 cut(s)	267
BsaJI	CCNNGG	5 cut(s)	219, 220, 235, 490, 534
BsaWI	WCCGGW	1 cut(s)	212
Bsc4I	CCNNNNNNNGG	4 cut(s)	212, 225, 418, 691
Bse118I	RCCGGY	2 cut(s)	17, 212
Bse1I	ACTGG	5 cut(s)	37, 267, 349, 631, 730
BseBI	CCWGG	2 cut(s)	221, 535
BseDI	CCNNGG	5 cut(s)	219, 220, 235, 490, 534
BseGI	GGATG	1 cut(s)	752
BseLI	CCNNNNNNNGG	4 cut(s)	212, 225, 418, 691
BseMII	CTCAG	1 cut(s)	682
BseNI	ACTGG	5 cut(s)	37, 267, 349, 631, 730
BseRI	GAGGAG	2 cut(s)	188, 648
BseXI	GCAGC	1 cut(s)	295
BseYI	CCCAGC	1 cut(s)	556
Bsh1285I	CGRYCG	1 cut(s)	847
BshFI	GGCC	2 cut(s)	205, 345
BshTI	ACCGGT	1 cut(s)	212
BsiEI	CGRYCG	1 cut(s)	847
BsiHKCI	CYCGRG	1 cut(s)	364
BsiSI	CCGG	6 cut(s)	18, 202, 213, 237, 305, 566
BslFI	GGGAC	1 cut(s)	218
BslI	CCNNNNNNNGG	4 cut(s)	212, 225, 418, 691
BsmAI	GTCTC	3 cut(s)	253, 449, 467
BsmFI	GGGAC	1 cut(s)	218
BsmI	GAATGC	1 cut(s)	524
BsnI	GGCC	2 cut(s)	205, 345
BsoBI	CYCGRG	1 cut(s)	364
Bsp1407I	TGTACA	1 cut(s)	582
Bsp143I	GATC	5 cut(s)	28, 808, 820, 844, 865
Bsp19I	CCATGG	1 cut(s)	490
BspACI	CCGC	1 cut(s)	184
BspANI	GGCC	2 cut(s)	205, 345
BspCNI	CTCAG	1 cut(s)	681
BspHI	TCATGA	1 cut(s)	99
BspLI	GGNNCC	1 cut(s)	217
BspPI	GGATC	1 cut(s)	860
BsrFI	RCCGGY	2 cut(s)	17, 212
BsrGI	TGTACA	1 cut(s)	582
BsrI	ACTGG	5 cut(s)	37, 267, 349, 631, 730
BssAI	RCCGGY	2 cut(s)	17, 212
BssECI	CCNNGG	5 cut(s)	219, 220, 235, 490, 534
BssMI	GATC	5 cut(s)	28, 808, 820, 844, 865
BssNI	GRCGYC	1 cut(s)	267
BssT1I	CCWWGG	1 cut(s)	490
Bst2UI	CCWGG	2 cut(s)	221, 535
Bst4CI	ACNGT	2 cut(s)	145, 582
Bst6I	CTCTTC	3 cut(s)	128, 625, 768
BstACI	GRCGYC	1 cut(s)	267
BstAUI	TGTACA	1 cut(s)	582
BstC8I	GCNNGC	1 cut(s)	19
BstDEI	CTNAG	3 cut(s)	399, 541, 668
BstDSI	CCRYGG	1 cut(s)	490
BstENI	CCTNNNNNAGG	1 cut(s)	416
BstF5I	GGATG	1 cut(s)	752
BstKTI	GATC	5 cut(s)	31, 811, 823, 847, 868
BstMAI	GTCTC	3 cut(s)	253, 449, 467
BstMBI	GATC	5 cut(s)	28, 808, 820, 844, 865
BstMCI	CGRYCG	1 cut(s)	847
BstMWI	GCNNNNNNNGC	1 cut(s)	530
BstNI	CCWGG	2 cut(s)	221, 535
BstNSI	RCATGY	1 cut(s)	340
BstSCI	CCNGG	3 cut(s)	219, 235, 533
BstSFI	CTRYAG	1 cut(s)	144
BstV1I	GCAGC	1 cut(s)	295
BstV2I	GAAGAC	1 cut(s)	433
BsuI	GTATCC	1 cut(s)	674
BsuRI	GGCC	2 cut(s)	205, 345
BtgI	CCRYGG	1 cut(s)	490
BtrI	CACGTC	1 cut(s)	232
BtsCI	GGATG	1 cut(s)	752
BtsI	GCAGTG	1 cut(s)	519
BtsIMutI	CAGTG	2 cut(s)	519, 818
Cac8I	GCNNGC	1 cut(s)	19
CciI	TCATGA	1 cut(s)	99
Cfr10I	RCCGGY	2 cut(s)	17, 212
Cfr13I	GGNCC	1 cut(s)	849
CseI	GACGC	1 cut(s)	256
Csp6I	GTAC	2 cut(s)	352, 583
CspAI	ACCGGT	1 cut(s)	212
CviAII	CATG	4 cut(s)	100, 246, 337, 491
CviQI	GTAC	2 cut(s)	352, 583
DdeI	CTNAG	3 cut(s)	399, 541, 668
DpnI	GATC	5 cut(s)	30, 810, 822, 846, 867
DpnII	GATC	5 cut(s)	28, 808, 820, 844, 865
DriI	GACNNNNNGTC	1 cut(s)	266
EaeI	YGGCCR	1 cut(s)	203
Eam1104I	CTCTTC	3 cut(s)	128, 625, 768
Eam1105I	GACNNNNNGTC	1 cut(s)	266
EarI	CTCTTC	3 cut(s)	128, 625, 768
Eco130I	CCWWGG	1 cut(s)	490
Eco47I	GGWCC	1 cut(s)	849
Eco88I	CYCGRG	1 cut(s)	364
EcoNI	CCTNNNNNAGG	1 cut(s)	416
EcoRI	GAATTC	1 cut(s)	712
EcoRII	CCWGG	2 cut(s)	219, 533
EcoT14I	CCWWGG	1 cut(s)	490
ErhI	CCWWGG	1 cut(s)	490
FaeI	CATG	4 cut(s)	103, 249, 340, 494
FaqI	GGGAC	1 cut(s)	218
FatI	CATG	4 cut(s)	99, 245, 336, 490
FauI	CCCGC	1 cut(s)	191
FbaI	TGATCA	2 cut(s)	28, 808
Fnu4HI	GCNGC	1 cut(s)	309
FokI	GGATG	1 cut(s)	739
Fsp4HI	GCNGC	1 cut(s)	309
FspBI	CTAG	2 cut(s)	341, 459
GluI	GCNGC	1 cut(s)	309
GsaI	CCCAGC	1 cut(s)	560
GsuI	CTGGAG	1 cut(s)	277
HaeIII	GGCC	2 cut(s)	205, 345
HapII	CCGG	6 cut(s)	18, 202, 213, 237, 305, 566
HgaI	GACGC	1 cut(s)	256
Hin1I	GRCGYC	1 cut(s)	267
Hin1II	CATG	4 cut(s)	103, 249, 340, 494
HindIII	AAGCTT	1 cut(s)	159
HinfI	GANTC	6 cut(s)	190, 362, 495, 571, 606, 638
HpaII	CCGG	6 cut(s)	18, 202, 213, 237, 305, 566
HphI	GGTGA	2 cut(s)	479, 818
Hpy166II	GTNNAC	1 cut(s)	317
Hpy188I	TCNGA	4 cut(s)	169, 671, 757, 849
Hpy188III	TCNNGA	2 cut(s)	100, 366
Hpy8I	GTNNAC	1 cut(s)	317
Hpy99I	CGWCG	1 cut(s)	272
HpyAV	CCTTC	2 cut(s)	539, 862
HpyCH4III	ACNGT	2 cut(s)	145, 582
HpyCH4IV	ACGT	1 cut(s)	231
HpyCH4V	TGCA	2 cut(s)	7, 524
HpyF10VI	GCNNNNNNNGC	1 cut(s)	530
HpyF3I	CTNAG	3 cut(s)	399, 541, 668
HpySE526I	ACGT	1 cut(s)	231
Hsp92I	GRCGYC	1 cut(s)	267
Hsp92II	CATG	4 cut(s)	103, 249, 340, 494
KroI	GCCGGC	1 cut(s)	17
KroNI	GCCGGC	1 cut(s)	19
Ksp22I	TGATCA	2 cut(s)	28, 808
Kzo9I	GATC	5 cut(s)	28, 808, 820, 844, 865
LmnI	GCTCC	2 cut(s)	173, 816
Lsp1109I	GCAGC	1 cut(s)	295
MaeI	CTAG	2 cut(s)	341, 459
MaeII	ACGT	1 cut(s)	231
MaeIII	GTNAC	3 cut(s)	373, 652, 728
MalI	GATC	5 cut(s)	30, 810, 822, 846, 867
MboI	GATC	5 cut(s)	28, 808, 820, 844, 865
MboII	GAAGA	6 cut(s)	89, 115, 118, 433, 642, 785
MluCI	AATT	4 cut(s)	11, 514, 712, 792
MlyI	GAGTC	2 cut(s)	356, 580
MmeI	TCCRAC	1 cut(s)	658
MnlI	CCTC	8 cut(s)	54, 74, 140, 209, 219, 376, 626, 695
MroNI	GCCGGC	1 cut(s)	17
MseI	TTAA	1 cut(s)	576
MslI	CAYNNNNRTG	1 cut(s)	104
MspI	CCGG	6 cut(s)	18, 202, 213, 237, 305, 566
MspR9I	CCNGG	3 cut(s)	221, 237, 535
Mva1269I	GAATGC	1 cut(s)	524
MvaI	CCWGG	2 cut(s)	221, 535
MwoI	GCNNNNNNNGC	1 cut(s)	530
NaeI	GCCGGC	1 cut(s)	19
NciI	CCSGG	1 cut(s)	237
NcoI	CCATGG	1 cut(s)	490
NdeII	GATC	5 cut(s)	28, 808, 820, 844, 865
NgoMIV	GCCGGC	1 cut(s)	17
NlaIII	CATG	4 cut(s)	103, 249, 340, 494
NlaIV	GGNNCC	1 cut(s)	217
NmuCI	GTSAC	1 cut(s)	652
NspI	RCATGY	1 cut(s)	340
PaeR7I	CTCGAG	1 cut(s)	364
PagI	TCATGA	1 cut(s)	99
PasI	CCCWGGG	1 cut(s)	220
PctI	GAATGC	1 cut(s)	524
PdiI	GCCGGC	1 cut(s)	19
PfeI	GAWTC	4 cut(s)	190, 495, 606, 638
PinAI	ACCGGT	1 cut(s)	212
PkrI	GCNGC	1 cut(s)	310
Ple19I	CGATCG	1 cut(s)	847
PleI	GAGTC	2 cut(s)	356, 579
PpsI	GAGTC	2 cut(s)	356, 579
Psp6I	CCWGG	2 cut(s)	219, 533
PspFI	CCCAGC	1 cut(s)	556
PspGI	CCWGG	2 cut(s)	219, 533
PspN4I	GGNNCC	1 cut(s)	217
PspPI	GGNCC	1 cut(s)	849
PvuI	CGATCG	1 cut(s)	847
RsaI	GTAC	2 cut(s)	353, 584
RsaNI	GTAC	2 cut(s)	352, 583
RseI	CAYNNNNRTG	1 cut(s)	104
SaqAI	TTAA	1 cut(s)	576
SatI	GCNGC	1 cut(s)	309
Sau3AI	GATC	5 cut(s)	28, 808, 820, 844, 865
Sau96I	GGNCC	1 cut(s)	849
SchI	GAGTC	2 cut(s)	356, 580
ScrFI	CCNGG	3 cut(s)	221, 237, 535
SfcI	CTRYAG	1 cut(s)	144
Sfr274I	CTCGAG	1 cut(s)	364
SinI	GGWCC	1 cut(s)	849
SlaI	CTCGAG	1 cut(s)	364
SmiMI	CAYNNNNRTG	1 cut(s)	104
SmlI	CTYRAG	1 cut(s)	364
SmoI	CTYRAG	1 cut(s)	364
SpeI	ACTAGT	1 cut(s)	458
Sse9I	AATT	4 cut(s)	11, 514, 712, 792
SsiI	CCGC	1 cut(s)	184
SspMI	CTAG	2 cut(s)	341, 459
StyD4I	CCNGG	3 cut(s)	219, 235, 533
StyI	CCWWGG	1 cut(s)	490
TaaI	ACNGT	2 cut(s)	145, 582
TaiI	ACGT	1 cut(s)	234
TaqI	TCGA	3 cut(s)	270, 365, 444
TasI	AATT	4 cut(s)	11, 514, 712, 792
TatI	WGTACW	2 cut(s)	351, 582
TfiI	GAWTC	4 cut(s)	190, 495, 606, 638
Tru1I	TTAA	1 cut(s)	576
Tru9I	TTAA	1 cut(s)	576
TscAI	CASTG	2 cut(s)	526, 818
TseFI	GTSAC	1 cut(s)	652
TseI	GCWGC	1 cut(s)	308
Tsp45I	GTSAC	1 cut(s)	652
TspDTI	ATGAA	6 cut(s)	116, 153, 182, 234, 610, 705
TspRI	CASTG	2 cut(s)	526, 818
VpaK11BI	GGWCC	1 cut(s)	849
XagI	CCTNNNNNAGG	1 cut(s)	416
XapI	RAATTY	1 cut(s)	712
XceI	RCATGY	1 cut(s)	340
XcmI	CCANNNNNNNNNTGG	1 cut(s)	284
XhoI	CTCGAG	1 cut(s)	364
XspI	CTAG	2 cut(s)	341, 459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.