Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002547

Physical Location & Seq

Genomic Coordinates Reverse (-)

58395818 .. 58397357

Gene Structure 1540 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019906

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGTTGCCAGTTCTCCTCTTCTTCCTCCTAGCCACACTTGTAGCAACAACCCAAGCTTCAAATGGAGCTATATCCCACCAGATTCATCTCCTCAGGCCACTAACTGGTTCCGGTGGGAGGCACGTCCCCGGCATTTCATGCCTGAGCTGGAGACTTGGTGTTGAAACTCACAACATCGTTGGCTGGACGACTGTTCCAGCTGTCTGTGAAGGCTATGTAGGGCACTACATGCTAGGCCACCAGTATAGACAGGACTCGAGAGCTGTTACTAATGAGGCTTTGCTCTACGCTAAGAGCCTGAACCTTACAAAGGACGGCAAGAACTTGTGGGTCTTCGACATCGATGAGACTACTCTCTCCAATCTGCCTTATTATTCTCACCATGGATTCGGAGTAGAGGTATATAATTCCACTTCATTCGACGCCTGGGTCTTAGAAGGCACGGCCCCAGCTTTGCCTGAGAGTCTTAAGCTGTACAATAAGTTATTGGCTCTTGGAATTAAGGTAGCATTCGTAACTGGAAGAGGAGTATCTCAAAGAAGTGTCACAGAAATCAATCTCAAATACGTTGGATATCACACATGGGAAAAGCTTGTGCTAAAGAATTCATCTTATTCTGGTAACACATCTGTTGTGTATAAATCATCCGAGAGAAAGGAACTTGAAAAGAGTGGATATAGAATAATTGGGAACATTGGTGATCAATGGAGCGATCTCTTGGGCACAAATGTGGGCGACCGGACCTTCAAGTTGCCTGATCCAATGTATTACATTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002213 GO:0003674 GO:0003824 GO:0003993 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0006793 GO:0006796 GO:0006950 GO:0006952 GO:0006979 GO:0008134 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009611 GO:0009625 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0022626 GO:0032991 GO:0042221 GO:0042578 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046688 GO:0050896 GO:0051704 GO:0051707 GO:1901700 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Acid_phosphat_B

Protein Analysis

260

Amino Acids

28.76

Weight (kDa)

8.39

Isoelectric Point (pI)

29.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acid_phosphat_B	PF03767	44 - 258	9.8e-84	HAD superfamily, subfamily IIIB (Acid phosphatase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002547)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g32551 FvH4_6g32560 FvH4_6g32560 FvH4_6g32570 FvH4_6g32570 FvH4_6g32570
malus_domestica	MD09G1200500.v1.1 MD09G1200900.v1.1 MD09G1201200.v1.1
prunus_persica	Prupe.3G057000_v2.0.a1 Prupe.3G057100_v2.0.a1
pyrus_communis	pycom09g11800 pycom17g19090
rosa_chinensis	RchiOBHm_Chr2g0140951 RchiOBHm_Chr2g0140961 RchiOBHm_Chr2g0140991 RchiOBHm_Chr2g0141021
rosa_laevigata	RLG00000019903 RLG00000019906 RLG00000019907 RLG00000019908
rosa_multiflora	Rmu_sc0003848.1_g000018 Rmu_sc0004769.1_g000010 Rmu_sc0004769.1_g000014
rosa_roxburghii	Rroxscaffold_2G00104300 Rroxscaffold_2G00104330 Rroxscaffold_2G00104340
rosa_rugosa	Rorug02G0365900 Rorug02G0366000 Rorug02G0366200
rosa_samantha	Rh2AG417300 Rh2AG417500 Rh2BG427400 Rh2CG403600 Rh2CG403800 Rh2DG436700 Rh2DG436900
rosa_wichuraiana	Rw2G034140 Rw2G034150 Rw2G034160 Rw2G034170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	428
AccB7I	CCANNNNNTGG	1 cut(s)	104
AclWI	GGATC	1 cut(s)	752
AcsI	RAATTY	1 cut(s)	604
AcyI	GRCGYC	1 cut(s)	423
AfaI	GTAC	1 cut(s)	476
AfiI	CCNNNNNNNGG	3 cut(s)	104, 117, 310
AflII	CTTAAG	1 cut(s)	467
AgsI	TTSAA	4 cut(s)	60, 164, 665, 748
AjiI	CACGTC	1 cut(s)	124
AjnI	CCWGG	1 cut(s)	425
AleI	CACNNNNGTG	1 cut(s)	728
AluBI	AGCT	8 cut(s)	56, 68, 147, 200, 263, 452, 472, 592
AluI	AGCT	8 cut(s)	56, 68, 147, 200, 263, 452, 472, 592
Alw26I	GTCTC	2 cut(s)	145, 341
AlwI	GGATC	1 cut(s)	752
Ama87I	CYCGRG	1 cut(s)	256
AoxI	GGCC	3 cut(s)	95, 235, 444
ApoI	RAATTY	1 cut(s)	604
AspS9I	GGNCC	2 cut(s)	445, 741
AsuC2I	CCSGG	1 cut(s)	129
AsuHPI	GGTGA	2 cut(s)	371, 710
AvaI	CYCGRG	1 cut(s)	256
AvaII	GGWCC	1 cut(s)	741
AxyI	CCTNAGG	1 cut(s)	92
BaeGI	GKGCMC	2 cut(s)	225, 725
BbsI	GAAGAC	1 cut(s)	325
BceAI	ACGGC	2 cut(s)	331, 459
BciT130I	CCWGG	1 cut(s)	427
BclI	TGATCA	1 cut(s)	700
BcnI	CCSGG	1 cut(s)	129
BcoDI	GTCTC	2 cut(s)	145, 341
BfaI	CTAG	2 cut(s)	29, 233
BfrI	CTTAAG	1 cut(s)	467
Bme1390I	CCNGG	2 cut(s)	129, 427
Bme18I	GGWCC	1 cut(s)	741
BmeT110I	CYCGRG	1 cut(s)	256
BmgBI	CACGTC	1 cut(s)	124
BmgT120I	GGNCC	2 cut(s)	445, 741
BmiI	GGNNCC	2 cut(s)	109, 447
BmrFI	CCNGG	2 cut(s)	129, 427
BpiI	GAAGAC	1 cut(s)	325
BpmI	CTGGAG	1 cut(s)	169
Bpu10I	CCTNAGC	1 cut(s)	143
BpuMI	CCSGG	1 cut(s)	129
Bsa29I	ATCGAT	1 cut(s)	342
BsaHI	GRCGYC	1 cut(s)	423
BsaJI	CCNNGG	3 cut(s)	127, 382, 426
BsaWI	WCCGGW	2 cut(s)	110, 738
BsaXI	ACNNNNNCTCC	4 cut(s)	142, 172, 384, 414
Bsc4I	CCNNNNNNNGG	3 cut(s)	104, 117, 310
Bse1I	ACTGG	4 cut(s)	8, 109, 241, 523
Bse21I	CCTNAGG	1 cut(s)	92
BseBI	CCWGG	1 cut(s)	427
BseCI	ATCGAT	1 cut(s)	342
BseDI	CCNNGG	3 cut(s)	127, 382, 426
BseGI	GGATG	1 cut(s)	644
BseLI	CCNNNNNNNGG	3 cut(s)	104, 117, 310
BseMII	CTCAG	3 cut(s)	106, 134, 450
BseNI	ACTGG	4 cut(s)	8, 109, 241, 523
BseRI	GAGGAG	3 cut(s)	5, 80, 540
BseSI	GKGCMC	2 cut(s)	225, 725
BseYI	CCCAGC	1 cut(s)	448
Bsh1285I	CGRYCG	1 cut(s)	739
BshFI	GGCC	3 cut(s)	97, 237, 446
BshVI	ATCGAT	1 cut(s)	342
BsiEI	CGRYCG	1 cut(s)	739
BsiHKCI	CYCGRG	1 cut(s)	256
BsiSI	CCGG	3 cut(s)	111, 129, 739
BslFI	GGGAC	1 cut(s)	110
BslI	CCNNNNNNNGG	3 cut(s)	104, 117, 310
BsmAI	GTCTC	2 cut(s)	145, 341
BsmFI	GGGAC	1 cut(s)	110
BsmI	GAATGC	1 cut(s)	509
BsnI	GGCC	3 cut(s)	97, 237, 446
BsoBI	CYCGRG	1 cut(s)	256
Bsp1286I	GDGCHC	2 cut(s)	225, 725
Bsp1407I	TGTACA	1 cut(s)	474
Bsp143I	GATC	3 cut(s)	700, 712, 757
Bsp19I	CCATGG	1 cut(s)	382
BspANI	GGCC	3 cut(s)	97, 237, 446
BspCNI	CTCAG	3 cut(s)	105, 135, 451
BspDI	ATCGAT	1 cut(s)	342
BspLI	GGNNCC	2 cut(s)	109, 447
BspPI	GGATC	1 cut(s)	752
BspTI	CTTAAG	1 cut(s)	467
BsrGI	TGTACA	1 cut(s)	474
BsrI	ACTGG	4 cut(s)	8, 109, 241, 523
BssECI	CCNNGG	3 cut(s)	127, 382, 426
BssMI	GATC	3 cut(s)	700, 712, 757
BssNI	GRCGYC	1 cut(s)	423
BssT1I	CCWWGG	1 cut(s)	382
Bst2UI	CCWGG	1 cut(s)	427
Bst4CI	ACNGT	1 cut(s)	193
Bst6I	CTCTTC	2 cut(s)	23, 517
BstACI	GRCGYC	1 cut(s)	423
BstAFI	CTTAAG	1 cut(s)	467
BstAPI	GCANNNNNTGC	2 cut(s)	138, 229
BstAUI	TGTACA	1 cut(s)	474
BstDEI	CTNAG	5 cut(s)	92, 143, 291, 433, 459
BstDSI	CCRYGG	1 cut(s)	382
BstENI	CCTNNNNNAGG	1 cut(s)	308
BstF5I	GGATG	1 cut(s)	644
BstKTI	GATC	3 cut(s)	703, 715, 760
BstMAI	GTCTC	2 cut(s)	145, 341
BstMBI	GATC	3 cut(s)	700, 712, 757
BstMCI	CGRYCG	1 cut(s)	739
BstMWI	GCNNNNNNNGC	2 cut(s)	138, 229
BstNI	CCWGG	1 cut(s)	427
BstNSI	RCATGY	1 cut(s)	232
BstSCI	CCNGG	2 cut(s)	127, 425
BstSLI	GKGCMC	2 cut(s)	225, 725
BstV2I	GAAGAC	1 cut(s)	325
Bsu15I	ATCGAT	1 cut(s)	342
Bsu36I	CCTNAGG	1 cut(s)	92
BsuRI	GGCC	3 cut(s)	97, 237, 446
BsuTUI	ATCGAT	1 cut(s)	342
BtgI	CCRYGG	1 cut(s)	382
BtrI	CACGTC	1 cut(s)	124
BtsCI	GGATG	1 cut(s)	644
Cfr13I	GGNCC	2 cut(s)	445, 741
ClaI	ATCGAT	1 cut(s)	342
CseI	GACGC	1 cut(s)	431
Csp6I	GTAC	1 cut(s)	475
CviAII	CATG	4 cut(s)	138, 229, 383, 582
CviQI	GTAC	1 cut(s)	475
DdeI	CTNAG	5 cut(s)	92, 143, 291, 433, 459
DpnI	GATC	3 cut(s)	702, 714, 759
DpnII	GATC	3 cut(s)	700, 712, 757
DrdI	GACNNNNNNGTC	1 cut(s)	428
DseDI	GACNNNNNNGTC	1 cut(s)	428
Eam1104I	CTCTTC	2 cut(s)	23, 517
EarI	CTCTTC	2 cut(s)	23, 517
Eco130I	CCWWGG	1 cut(s)	382
Eco32I	GATATC	1 cut(s)	575
Eco47I	GGWCC	1 cut(s)	741
Eco81I	CCTNAGG	1 cut(s)	92
Eco88I	CYCGRG	1 cut(s)	256
EcoNI	CCTNNNNNAGG	1 cut(s)	308
EcoRI	GAATTC	1 cut(s)	604
EcoRII	CCWGG	1 cut(s)	425
EcoRV	GATATC	1 cut(s)	575
EcoT14I	CCWWGG	1 cut(s)	382
ErhI	CCWWGG	1 cut(s)	382
FaeI	CATG	4 cut(s)	141, 232, 386, 585
FaqI	GGGAC	1 cut(s)	110
FatI	CATG	4 cut(s)	137, 228, 382, 581
FbaI	TGATCA	1 cut(s)	700
FokI	GGATG	1 cut(s)	631
FspBI	CTAG	2 cut(s)	29, 233
GsaI	CCCAGC	1 cut(s)	452
GsuI	CTGGAG	1 cut(s)	169
HaeIII	GGCC	3 cut(s)	97, 237, 446
HapII	CCGG	3 cut(s)	111, 129, 739
HgaI	GACGC	1 cut(s)	431
Hin1I	GRCGYC	1 cut(s)	423
Hin1II	CATG	4 cut(s)	141, 232, 386, 585
HindIII	AAGCTT	2 cut(s)	54, 590
HinfI	GANTC	4 cut(s)	82, 254, 387, 463
HpaII	CCGG	3 cut(s)	111, 129, 739
HphI	GGTGA	2 cut(s)	371, 710
Hpy188I	TCNGA	2 cut(s)	392, 649
Hpy188III	TCNNGA	1 cut(s)	258
Hpy99I	CGWCG	1 cut(s)	425
HpyAV	CCTTC	3 cut(s)	203, 431, 754
HpyCH4III	ACNGT	1 cut(s)	193
HpyCH4IV	ACGT	2 cut(s)	123, 567
HpyF10VI	GCNNNNNNNGC	2 cut(s)	138, 229
HpyF3I	CTNAG	5 cut(s)	92, 143, 291, 433, 459
HpySE526I	ACGT	2 cut(s)	123, 567
Hsp92I	GRCGYC	1 cut(s)	423
Hsp92II	CATG	4 cut(s)	141, 232, 386, 585
Ksp22I	TGATCA	1 cut(s)	700
Kzo9I	GATC	3 cut(s)	700, 712, 757
LmnI	GCTCC	2 cut(s)	65, 708
MaeI	CTAG	2 cut(s)	29, 233
MaeII	ACGT	2 cut(s)	123, 567
MaeIII	GTNAC	4 cut(s)	265, 514, 544, 620
MalI	GATC	3 cut(s)	702, 714, 759
MboI	GATC	3 cut(s)	700, 712, 757
MboII	GAAGA	4 cut(s)	10, 13, 325, 534
MhlI	GDGCHC	2 cut(s)	225, 725
MluCI	AATT	4 cut(s)	406, 498, 604, 684
MlyI	GAGTC	2 cut(s)	248, 472
MmeI	TCCRAC	1 cut(s)	550
MnlI	CCTC	7 cut(s)	26, 35, 101, 111, 268, 391, 518
MseI	TTAA	2 cut(s)	468, 501
MslI	CAYNNNNRTG	1 cut(s)	728
MspA1I	CMGCKG	1 cut(s)	200
MspCI	CTTAAG	1 cut(s)	467
MspI	CCGG	3 cut(s)	111, 129, 739
MspR9I	CCNGG	2 cut(s)	129, 427
Mva1269I	GAATGC	1 cut(s)	509
MvaI	CCWGG	1 cut(s)	427
MwoI	GCNNNNNNNGC	2 cut(s)	138, 229
NciI	CCSGG	1 cut(s)	129
NcoI	CCATGG	1 cut(s)	382
NdeII	GATC	3 cut(s)	700, 712, 757
NlaIII	CATG	4 cut(s)	141, 232, 386, 585
NlaIV	GGNNCC	2 cut(s)	109, 447
NmuCI	GTSAC	1 cut(s)	544
NspI	RCATGY	1 cut(s)	232
OliI	CACNNNNGTG	1 cut(s)	728
PaeR7I	CTCGAG	1 cut(s)	256
PctI	GAATGC	1 cut(s)	509
PfeI	GAWTC	2 cut(s)	82, 387
PflMI	CCANNNNNTGG	1 cut(s)	104
PleI	GAGTC	2 cut(s)	248, 471
PpsI	GAGTC	2 cut(s)	248, 471
Psp6I	CCWGG	1 cut(s)	425
PspFI	CCCAGC	1 cut(s)	448
PspGI	CCWGG	1 cut(s)	425
PspN4I	GGNNCC	2 cut(s)	109, 447
PspPI	GGNCC	2 cut(s)	445, 741
PvuII	CAGCTG	1 cut(s)	200
RsaI	GTAC	1 cut(s)	476
RsaNI	GTAC	1 cut(s)	475
RseI	CAYNNNNRTG	1 cut(s)	728
SaqAI	TTAA	2 cut(s)	468, 501
Sau3AI	GATC	3 cut(s)	700, 712, 757
Sau96I	GGNCC	2 cut(s)	445, 741
SchI	GAGTC	2 cut(s)	248, 472
ScrFI	CCNGG	2 cut(s)	129, 427
SduI	GDGCHC	2 cut(s)	225, 725
Sfr274I	CTCGAG	1 cut(s)	256
SinI	GGWCC	1 cut(s)	741
SlaI	CTCGAG	1 cut(s)	256
SmiMI	CAYNNNNRTG	1 cut(s)	728
SmlI	CTYRAG	2 cut(s)	256, 467
SmoI	CTYRAG	2 cut(s)	256, 467
Sse9I	AATT	4 cut(s)	406, 498, 604, 684
SspMI	CTAG	2 cut(s)	29, 233
StyD4I	CCNGG	2 cut(s)	127, 425
StyI	CCWWGG	1 cut(s)	382
TaaI	ACNGT	1 cut(s)	193
TaiI	ACGT	2 cut(s)	126, 570
TaqI	TCGA	4 cut(s)	257, 336, 342, 420
TasI	AATT	4 cut(s)	406, 498, 604, 684
TatI	WGTACW	1 cut(s)	474
TfiI	GAWTC	2 cut(s)	82, 387
Tru1I	TTAA	2 cut(s)	468, 501
Tru9I	TTAA	2 cut(s)	468, 501
TseFI	GTSAC	1 cut(s)	544
Tsp45I	GTSAC	1 cut(s)	544
TspDTI	ATGAA	4 cut(s)	74, 126, 405, 597
Van91I	CCANNNNNTGG	1 cut(s)	104
Vha464I	CTTAAG	1 cut(s)	467
VpaK11BI	GGWCC	1 cut(s)	741
XagI	CCTNNNNNAGG	1 cut(s)	308
XapI	RAATTY	1 cut(s)	604
XceI	RCATGY	1 cut(s)	232
XcmI	CCANNNNNNNNNTGG	1 cut(s)	59
XhoI	CTCGAG	1 cut(s)	256
XspI	CTAG	2 cut(s)	29, 233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.