Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003848.1

Orthogroup ID

OG0002547

Physical Location & Seq

Genomic Coordinates Reverse (-)

72161 .. 74493

Gene Structure 2333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003848.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

atgattcaaagccagaatttgatcatgatcgagaggcaacaacctttcgttctcacaatgaaagcattgccagtactacaactcttgtttctagccacacttgtggccacaacccaaggttcattcgagcatgacatagccgaccaaataatccatctcctccggccaaaatcaggagtcggtggcagccaagtcggcaacatttcatgcctgagttggcgactgggagtggagacccacaacatcattgactggacgactattccagctgcttgtgaaggctacgtcgggcactacatgctcggcgaccagtacagaaaagactcggaagtggttactcatgaggcctatgtctatgctgaggggctgaacctcaccaacgatggtaacaacttgtgggtatttgacatcgatgagactactctctctaatctgccgtactatgccgagcatggattcggggtggaggtatataattcaactgcattcactgcctgggtcttggaaggcatagccccagctttgcccgagagtctaaagctgtacaagaagttattggctcttggaatcaaggttgcattcataactggaagagaagaatcacagagaaatgtcacagaaaccaatctgaagaatgttggatacgatacctgggaaacgcttgtactaaaagattcatcttattctggtagcacagcagtggtgtataaatcagctgagagaaagaagcttgaagaaagtggatatagaataatcggaaacattggtgatcaatggagtgatataatgggaacaaacatcggcaatagaaccttcaagttgcctgatccaatgtattacattagctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002213 GO:0003674 GO:0003824 GO:0003993 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0006793 GO:0006796 GO:0006950 GO:0006952 GO:0006979 GO:0008134 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009611 GO:0009625 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0022626 GO:0032991 GO:0042221 GO:0042578 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046688 GO:0050896 GO:0051704 GO:0051707 GO:1901700 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Acid_phosphat_B

Protein Analysis

282

Amino Acids

31.53

Weight (kDa)

5.09

Isoelectric Point (pI)

38.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002547)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g32551 FvH4_6g32560 FvH4_6g32560 FvH4_6g32570 FvH4_6g32570 FvH4_6g32570
malus_domestica	MD09G1200500.v1.1 MD09G1200900.v1.1 MD09G1201200.v1.1
prunus_persica	Prupe.3G057000_v2.0.a1 Prupe.3G057100_v2.0.a1
pyrus_communis	pycom09g11800 pycom17g19090
rosa_chinensis	RchiOBHm_Chr2g0140951 RchiOBHm_Chr2g0140961 RchiOBHm_Chr2g0140991 RchiOBHm_Chr2g0141021
rosa_laevigata	RLG00000019903 RLG00000019906 RLG00000019907 RLG00000019908
rosa_multiflora	Rmu_sc0003848.1_g000018 Rmu_sc0004769.1_g000010 Rmu_sc0004769.1_g000014
rosa_roxburghii	Rroxscaffold_2G00104300 Rroxscaffold_2G00104330 Rroxscaffold_2G00104340
rosa_rugosa	Rorug02G0365900 Rorug02G0366000 Rorug02G0366200
rosa_samantha	Rh2AG417300 Rh2AG417500 Rh2BG427400 Rh2CG403600 Rh2CG403800 Rh2DG436700 Rh2DG436900
rosa_wichuraiana	Rw2G034140 Rw2G034150 Rw2G034160 Rw2G034170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	821
AcoI	YGGCCR	2 cut(s)	105, 164
AcsI	RAATTY	1 cut(s)	16
AcuI	CTGAAG	1 cut(s)	650
AfaI	GTAC	5 cut(s)	75, 314, 440, 545, 666
AfiI	CCNNNNNNNGG	1 cut(s)	173
AgsI	TTSAA	4 cut(s)	8, 480, 734, 817
AjnI	CCWGG	2 cut(s)	494, 650
AleI	CACNNNNGTG	2 cut(s)	101, 698
AluBI	AGCT	6 cut(s)	269, 521, 541, 716, 730, 846
AluI	AGCT	6 cut(s)	269, 521, 541, 716, 730, 846
Alw26I	GTCTC	2 cut(s)	227, 410
AlwI	GGATC	1 cut(s)	821
Ama87I	CYCGRG	1 cut(s)	527
AoxI	GGCC	3 cut(s)	105, 164, 345
ApeKI	GCWGC	2 cut(s)	186, 269
ApoI	RAATTY	1 cut(s)	16
AsuHPI	GGTGA	2 cut(s)	367, 779
AvaI	CYCGRG	1 cut(s)	527
BaeGI	GKGCMC	1 cut(s)	294
BalI	TGGCCA	1 cut(s)	107
BbvCI	CCTCAGC	1 cut(s)	360
BbvI	GCAGC	2 cut(s)	198, 256
BccI	CCATC	2 cut(s)	162, 377
BceAI	ACGGC	1 cut(s)	421
BcgI	CGANNNNNNTGC	2 cut(s)	175, 209
BciT130I	CCWGG	2 cut(s)	496, 652
BciVI	GTATCC	1 cut(s)	635
BclI	TGATCA	2 cut(s)	21, 769
BcoDI	GTCTC	2 cut(s)	227, 410
BfaI	CTAG	1 cut(s)	92
BfuI	GTATCC	1 cut(s)	635
BglI	GCCNNNNNGGC	1 cut(s)	195
BisI	GCNGC	2 cut(s)	187, 270
BlsI	GCNGC	2 cut(s)	188, 271
BmcAI	AGTACT	1 cut(s)	75
Bme1390I	CCNGG	2 cut(s)	496, 652
BmeT110I	CYCGRG	1 cut(s)	527
BmrFI	CCNGG	2 cut(s)	496, 652
BmrI	ACTGGG	1 cut(s)	233
BmuI	ACTGGG	1 cut(s)	233
Bpu10I	CCTNAGC	1 cut(s)	360
Bsa29I	ATCGAT	1 cut(s)	411
BsaBI	GATNNNNATC	1 cut(s)	26
BsaI	GGTCTC	1 cut(s)	227
BsaJI	CCNNGG	3 cut(s)	115, 495, 651
Bsc4I	CCNNNNNNNGG	1 cut(s)	173
Bse1I	ACTGG	5 cut(s)	71, 228, 257, 310, 592
Bse3DI	GCAATG	1 cut(s)	65
Bse8I	GATNNNNATC	1 cut(s)	26
BseBI	CCWGG	2 cut(s)	496, 652
BseCI	ATCGAT	1 cut(s)	411
BseDI	CCNNGG	3 cut(s)	115, 495, 651
BseJI	GATNNNNATC	1 cut(s)	26
BseLI	CCNNNNNNNGG	1 cut(s)	173
BseMI	GCAATG	1 cut(s)	65
BseMII	CTCAG	3 cut(s)	203, 351, 708
BseNI	ACTGG	5 cut(s)	71, 228, 257, 310, 592
BseRI	GAGGAG	1 cut(s)	149
BseSI	GKGCMC	1 cut(s)	294
BseXI	GCAGC	2 cut(s)	198, 256
BseYI	CCCAGC	1 cut(s)	517
BshFI	GGCC	3 cut(s)	107, 166, 347
BshVI	ATCGAT	1 cut(s)	411
BsiHKCI	CYCGRG	1 cut(s)	527
BsiSI	CCGG	1 cut(s)	163
BslI	CCNNNNNNNGG	1 cut(s)	173
BsmAI	GTCTC	2 cut(s)	227, 410
BsmI	GAATGC	2 cut(s)	485, 578
BsnI	GGCC	3 cut(s)	107, 166, 347
Bso31I	GGTCTC	1 cut(s)	227
BsoBI	CYCGRG	1 cut(s)	527
Bsp1286I	GDGCHC	1 cut(s)	294
Bsp1407I	TGTACA	1 cut(s)	543
Bsp143I	GATC	4 cut(s)	21, 27, 769, 826
BspANI	GGCC	3 cut(s)	107, 166, 347
BspCNI	CTCAG	3 cut(s)	204, 352, 709
BspDI	ATCGAT	1 cut(s)	411
BspHI	TCATGA	2 cut(s)	24, 340
BspPI	GGATC	1 cut(s)	821
BspTNI	GGTCTC	1 cut(s)	227
BsrDI	GCAATG	1 cut(s)	65
BsrGI	TGTACA	1 cut(s)	543
BsrI	ACTGG	5 cut(s)	71, 228, 257, 310, 592
BssECI	CCNNGG	3 cut(s)	115, 495, 651
BssMI	GATC	4 cut(s)	21, 27, 769, 826
BssT1I	CCWWGG	1 cut(s)	115
Bst2UI	CCWGG	2 cut(s)	496, 652
Bst6I	CTCTTC	1 cut(s)	586
BstAPI	GCANNNNNTGC	2 cut(s)	298, 491
BstAUI	TGTACA	1 cut(s)	543
BstDEI	CTNAG	3 cut(s)	212, 360, 717
BstKTI	GATC	4 cut(s)	24, 30, 772, 829
BstMAI	GTCTC	2 cut(s)	227, 410
BstMBI	GATC	4 cut(s)	21, 27, 769, 826
BstMWI	GCNNNNNNNGC	3 cut(s)	195, 298, 491
BstNI	CCWGG	2 cut(s)	496, 652
BstNSI	RCATGY	1 cut(s)	301
BstSCI	CCNGG	2 cut(s)	494, 650
BstSLI	GKGCMC	1 cut(s)	294
BstV1I	GCAGC	2 cut(s)	198, 256
BstXI	CCANNNNNNTGG	1 cut(s)	103
Bsu15I	ATCGAT	1 cut(s)	411
BsuI	GTATCC	1 cut(s)	635
BsuRI	GGCC	3 cut(s)	107, 166, 347
BsuTUI	ATCGAT	1 cut(s)	411
BtsI	GCAGTG	2 cut(s)	489, 705
BtsIMutI	CAGTG	2 cut(s)	489, 705
CciI	TCATGA	2 cut(s)	24, 340
ClaI	ATCGAT	1 cut(s)	411
Csp6I	GTAC	5 cut(s)	74, 313, 439, 544, 665
CviAII	CATG	6 cut(s)	25, 131, 207, 298, 341, 452
CviQI	GTAC	5 cut(s)	74, 313, 439, 544, 665
DdeI	CTNAG	3 cut(s)	212, 360, 717
DpnI	GATC	4 cut(s)	23, 29, 771, 828
DpnII	GATC	4 cut(s)	21, 27, 769, 826
EaeI	YGGCCR	2 cut(s)	105, 164
Eam1104I	CTCTTC	1 cut(s)	586
EarI	CTCTTC	1 cut(s)	586
Eco130I	CCWWGG	1 cut(s)	115
Eco147I	AGGCCT	1 cut(s)	347
Eco31I	GGTCTC	1 cut(s)	227
Eco57I	CTGAAG	1 cut(s)	650
Eco88I	CYCGRG	1 cut(s)	527
EcoRII	CCWGG	2 cut(s)	494, 650
EcoT14I	CCWWGG	1 cut(s)	115
ErhI	CCWWGG	1 cut(s)	115
FaeI	CATG	6 cut(s)	28, 134, 210, 301, 344, 455
FatI	CATG	6 cut(s)	24, 130, 206, 297, 340, 451
FbaI	TGATCA	2 cut(s)	21, 769
Fnu4HI	GCNGC	2 cut(s)	187, 270
Fsp4HI	GCNGC	2 cut(s)	187, 270
FspBI	CTAG	1 cut(s)	92
GluI	GCNGC	2 cut(s)	187, 270
GsaI	CCCAGC	1 cut(s)	521
HaeIII	GGCC	3 cut(s)	107, 166, 347
HapII	CCGG	1 cut(s)	163
Hin1II	CATG	6 cut(s)	28, 134, 210, 301, 344, 455
HindIII	AAGCTT	1 cut(s)	728
HinfI	GANTC	8 cut(s)	4, 177, 323, 456, 532, 567, 599, 674
HpaII	CCGG	1 cut(s)	163
HphI	GGTGA	2 cut(s)	367, 779
Hpy188I	TCNGA	3 cut(s)	328, 630, 758
Hpy188III	TCNNGA	4 cut(s)	25, 31, 174, 341
Hpy99I	CGWCG	1 cut(s)	290
HpyAV	CCTTC	3 cut(s)	272, 500, 823
HpyCH4IV	ACGT	1 cut(s)	285
HpyCH4V	TGCA	2 cut(s)	485, 578
HpyF10VI	GCNNNNNNNGC	3 cut(s)	195, 298, 491
HpyF3I	CTNAG	3 cut(s)	212, 360, 717
HpySE526I	ACGT	1 cut(s)	285
Hsp92II	CATG	6 cut(s)	28, 134, 210, 301, 344, 455
Ksp22I	TGATCA	2 cut(s)	21, 769
Kzo9I	GATC	4 cut(s)	21, 27, 769, 826
Lsp1109I	GCAGC	2 cut(s)	198, 256
MaeI	CTAG	1 cut(s)	92
MaeII	ACGT	1 cut(s)	285
MaeIII	GTNAC	3 cut(s)	334, 386, 613
MalI	GATC	4 cut(s)	23, 29, 771, 828
MboI	GATC	4 cut(s)	21, 27, 769, 826
MboII	GAAGA	4 cut(s)	603, 608, 643, 746
MhlI	GDGCHC	1 cut(s)	294
MlsI	TGGCCA	1 cut(s)	107
MluCI	AATT	2 cut(s)	16, 475
MluNI	TGGCCA	1 cut(s)	107
MlyI	GAGTC	3 cut(s)	186, 317, 541
MmeI	TCCRAC	1 cut(s)	619
MnlI	CCTC	6 cut(s)	27, 170, 337, 355, 383, 460
Mox20I	TGGCCA	1 cut(s)	107
MscI	TGGCCA	1 cut(s)	107
MslI	CAYNNNNRTG	2 cut(s)	101, 698
Msp20I	TGGCCA	1 cut(s)	107
MspA1I	CMGCKG	2 cut(s)	269, 716
MspI	CCGG	1 cut(s)	163
MspR9I	CCNGG	2 cut(s)	496, 652
Mva1269I	GAATGC	2 cut(s)	485, 578
MvaI	CCWGG	2 cut(s)	496, 652
MwoI	GCNNNNNNNGC	3 cut(s)	195, 298, 491
NdeII	GATC	4 cut(s)	21, 27, 769, 826
NlaIII	CATG	6 cut(s)	28, 134, 210, 301, 344, 455
NmeAIII	GCCGAG	2 cut(s)	282, 472
NmuCI	GTSAC	1 cut(s)	613
NspI	RCATGY	1 cut(s)	301
OliI	CACNNNNGTG	2 cut(s)	101, 698
PagI	TCATGA	2 cut(s)	24, 340
PceI	AGGCCT	1 cut(s)	347
PctI	GAATGC	2 cut(s)	485, 578
PfeI	GAWTC	5 cut(s)	4, 456, 567, 599, 674
PkrI	GCNGC	2 cut(s)	188, 271
PleI	GAGTC	3 cut(s)	185, 317, 540
PpsI	GAGTC	3 cut(s)	185, 317, 540
Psp6I	CCWGG	2 cut(s)	494, 650
PspFI	CCCAGC	1 cut(s)	517
PspGI	CCWGG	2 cut(s)	494, 650
PvuII	CAGCTG	2 cut(s)	269, 716
RsaI	GTAC	5 cut(s)	75, 314, 440, 545, 666
RsaNI	GTAC	5 cut(s)	74, 313, 439, 544, 665
RseI	CAYNNNNRTG	2 cut(s)	101, 698
SatI	GCNGC	2 cut(s)	187, 270
Sau3AI	GATC	4 cut(s)	21, 27, 769, 826
ScaI	AGTACT	1 cut(s)	75
SchI	GAGTC	3 cut(s)	186, 317, 541
ScrFI	CCNGG	2 cut(s)	496, 652
SduI	GDGCHC	1 cut(s)	294
SmiMI	CAYNNNNRTG	2 cut(s)	101, 698
Sse9I	AATT	2 cut(s)	16, 475
SseBI	AGGCCT	1 cut(s)	347
SspMI	CTAG	1 cut(s)	92
StuI	AGGCCT	1 cut(s)	347
StyD4I	CCNGG	2 cut(s)	494, 650
StyI	CCWWGG	1 cut(s)	115
TaiI	ACGT	1 cut(s)	288
TaqI	TCGA	3 cut(s)	30, 126, 411
TasI	AATT	2 cut(s)	16, 475
TatI	WGTACW	4 cut(s)	73, 312, 543, 664
TfiI	GAWTC	5 cut(s)	4, 456, 567, 599, 674
TscAI	CASTG	2 cut(s)	496, 705
TseFI	GTSAC	1 cut(s)	613
TseI	GCWGC	2 cut(s)	186, 269
Tsp45I	GTSAC	1 cut(s)	613
TspDTI	ATGAA	5 cut(s)	74, 111, 195, 571, 666
TspRI	CASTG	2 cut(s)	496, 705
XapI	RAATTY	1 cut(s)	16
XceI	RCATGY	1 cut(s)	301
XspI	CTAG	1 cut(s)	92
ZrmI	AGTACT	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.