Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002547

Physical Location & Seq

Genomic Coordinates Reverse (-)

25615977 .. 25618169

Gene Structure 2193 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g32551.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGAAAATCAGCATTCGATTCATCAAAGGCAATAACAACGTACCTTTCGTTCTCACAATGAAAGCATTGCCAGTTCTACAACTCTTGTTTCTAGCCACACTTGTGGCCACAACCCAAGGTTCATTCGAGCTTGACTTAGCCGACAAGATAATACATCTCCTCCAGCCAAAATCCGGCTCCGGCGGCAGTCATGTCGGCAACATTTCATGCCTGAGTTGGCGACTGGGCGTGGAGACCCACAACATCATTGACTGGACGACTATTCCGGCTGCTTGTGAAGGCTACGTCGGGCACTACATGCTCGGCGACCAGTACAGAAAAGACTCGGCAGTGGTTACTCATGAGGCCTATGTCTACGCCGAGGGCCTGAATCTCACCGACGATGGTAACAAGTTGTGGGTCTTTGACGTCGACGAGACTACTCTCTCTAATCTGCCTTACTATGCCAAGCATGGATTCGGGGTAGAGGTATATAATTCCACTGCATTCAACGCCTGGGTCTTGGAAGGCATAGCCCCAGCTTTGCCCGAGAGTCTAAAGTTGTACAAGAAGTTGTTGGCTCTTGGAATCAAGGTTGCATTCATAACCGGAAGAGGAGAATCTCAGAGAAATGTCACAGAAACCAATCTGAAGAATGCTGGATATGATACCTGGGAAACGCTTATACTTAAGGGTTCATCTTATTCTGGTAACACATCAGTGGTGTATAAATCAGCTGAGAGAACAAAACTTGAAGAGAGCGGATACACAATAATCGGAAACATTGGTGATCAATGGAGTGATCTAATTGGCACAAGCGTCGGCAATCGAACCTTCAAGTTGCCTGATCCTATGTATTACATTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002213 GO:0003674 GO:0003824 GO:0003993 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0006793 GO:0006796 GO:0006950 GO:0006952 GO:0006979 GO:0008134 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009611 GO:0009625 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0022626 GO:0032991 GO:0042221 GO:0042578 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046688 GO:0050896 GO:0051704 GO:0051707 GO:1901700 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Acid_phosphat_B

Protein Analysis

283

Amino Acids

31.09

Weight (kDa)

5.88

Isoelectric Point (pI)

28.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acid_phosphat_B	PF03767	65 - 281	2.1e-84	HAD superfamily, subfamily IIIB (Acid phosphatase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002547)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g32551 FvH4_6g32560 FvH4_6g32560 FvH4_6g32570 FvH4_6g32570 FvH4_6g32570
malus_domestica	MD09G1200500.v1.1 MD09G1200900.v1.1 MD09G1201200.v1.1
prunus_persica	Prupe.3G057000_v2.0.a1 Prupe.3G057100_v2.0.a1
pyrus_communis	pycom09g11800 pycom17g19090
rosa_chinensis	RchiOBHm_Chr2g0140951 RchiOBHm_Chr2g0140961 RchiOBHm_Chr2g0140991 RchiOBHm_Chr2g0141021
rosa_laevigata	RLG00000019903 RLG00000019906 RLG00000019907 RLG00000019908
rosa_multiflora	Rmu_sc0003848.1_g000018 Rmu_sc0004769.1_g000010 Rmu_sc0004769.1_g000014
rosa_roxburghii	Rroxscaffold_2G00104300 Rroxscaffold_2G00104330 Rroxscaffold_2G00104340
rosa_rugosa	Rorug02G0365900 Rorug02G0366000 Rorug02G0366200
rosa_samantha	Rh2AG417300 Rh2AG417500 Rh2BG427400 Rh2CG403600 Rh2CG403800 Rh2DG436700 Rh2DG436900
rosa_wichuraiana	Rw2G034140 Rw2G034150 Rw2G034160 Rw2G034170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	411
AccBSI	CCGCTC	1 cut(s)	741
AccI	GTMKAC	2 cut(s)	354, 411
AciI	CCGC	2 cut(s)	183, 741
AclWI	GGATC	1 cut(s)	821
AcoI	YGGCCR	1 cut(s)	105
AcuI	CTGAAG	1 cut(s)	650
AcyI	GRCGYC	1 cut(s)	408
AfaI	GTAC	3 cut(s)	42, 314, 545
AfiI	CCNNNNNNNGG	1 cut(s)	173
AflII	CTTAAG	1 cut(s)	668
AgsI	TTSAA	3 cut(s)	490, 734, 817
AjnI	CCWGG	2 cut(s)	494, 650
AjuI	GAANNNNNNNTTGG	2 cut(s)	440, 472
AleI	CACNNNNGTG	2 cut(s)	101, 698
AluBI	AGCT	3 cut(s)	130, 521, 716
AluI	AGCT	3 cut(s)	130, 521, 716
Alw26I	GTCTC	2 cut(s)	227, 410
AlwI	GGATC	1 cut(s)	821
Ama87I	CYCGRG	1 cut(s)	527
AoxI	GGCC	3 cut(s)	105, 345, 364
ApeKI	GCWGC	1 cut(s)	269
AspS9I	GGNCC	1 cut(s)	364
AsuHPI	GGTGA	2 cut(s)	367, 779
AvaI	CYCGRG	1 cut(s)	527
BaeGI	GKGCMC	1 cut(s)	294
BalI	TGGCCA	1 cut(s)	107
BbvI	GCAGC	1 cut(s)	256
BccI	CCATC	1 cut(s)	377
BcgI	CGANNNNNNTGC	4 cut(s)	175, 209, 781, 815
BciT130I	CCWGG	2 cut(s)	496, 652
BciVI	GTATCC	1 cut(s)	737
BclI	TGATCA	1 cut(s)	769
BcoDI	GTCTC	2 cut(s)	227, 410
BfaI	CTAG	1 cut(s)	92
BfrI	CTTAAG	1 cut(s)	668
BfuI	GTATCC	1 cut(s)	737
BisI	GCNGC	2 cut(s)	184, 270
BlsI	GCNGC	2 cut(s)	185, 271
Bme1390I	CCNGG	2 cut(s)	496, 652
BmeT110I	CYCGRG	1 cut(s)	527
BmgT120I	GGNCC	1 cut(s)	364
BmiI	GGNNCC	1 cut(s)	178
BmrFI	CCNGG	2 cut(s)	496, 652
BmrI	ACTGGG	1 cut(s)	233
BmuI	ACTGGG	1 cut(s)	233
BpmI	CTGGAG	1 cut(s)	146
BsaHI	GRCGYC	1 cut(s)	408
BsaI	GGTCTC	1 cut(s)	227
BsaJI	CCNNGG	4 cut(s)	115, 360, 495, 651
BsaWI	WCCGGW	1 cut(s)	587
BsaXI	ACNNNNNCTCC	2 cut(s)	144, 174
Bsc4I	CCNNNNNNNGG	1 cut(s)	173
Bse1I	ACTGG	4 cut(s)	71, 228, 257, 310
Bse3DI	GCAATG	1 cut(s)	65
BseBI	CCWGG	2 cut(s)	496, 652
BseDI	CCNNGG	4 cut(s)	115, 360, 495, 651
BseLI	CCNNNNNNNGG	1 cut(s)	173
BseMI	GCAATG	1 cut(s)	65
BseMII	CTCAG	3 cut(s)	203, 617, 708
BseNI	ACTGG	4 cut(s)	71, 228, 257, 310
BseRI	GAGGAG	2 cut(s)	149, 609
BseSI	GKGCMC	1 cut(s)	294
BseXI	GCAGC	1 cut(s)	256
BseYI	CCCAGC	1 cut(s)	517
BshFI	GGCC	3 cut(s)	107, 347, 366
BsiHKCI	CYCGRG	1 cut(s)	527
BsiSI	CCGG	4 cut(s)	174, 180, 266, 588
BslI	CCNNNNNNNGG	1 cut(s)	173
BsmAI	GTCTC	2 cut(s)	227, 410
BsmI	GAATGC	4 cut(s)	12, 485, 578, 640
BsnI	GGCC	3 cut(s)	107, 347, 366
Bso31I	GGTCTC	1 cut(s)	227
BsoBI	CYCGRG	1 cut(s)	527
Bsp1286I	GDGCHC	1 cut(s)	294
Bsp1407I	TGTACA	1 cut(s)	543
Bsp143I	GATC	3 cut(s)	769, 781, 826
BspACI	CCGC	2 cut(s)	183, 741
BspANI	GGCC	3 cut(s)	107, 347, 366
BspCNI	CTCAG	3 cut(s)	204, 616, 709
BspHI	TCATGA	1 cut(s)	340
BspLI	GGNNCC	1 cut(s)	178
BspPI	GGATC	1 cut(s)	821
BspTI	CTTAAG	1 cut(s)	668
BspTNI	GGTCTC	1 cut(s)	227
BsrBI	CCGCTC	1 cut(s)	741
BsrDI	GCAATG	1 cut(s)	65
BsrGI	TGTACA	1 cut(s)	543
BsrI	ACTGG	4 cut(s)	71, 228, 257, 310
BssECI	CCNNGG	4 cut(s)	115, 360, 495, 651
BssMI	GATC	3 cut(s)	769, 781, 826
BssNI	GRCGYC	1 cut(s)	408
BssT1I	CCWWGG	1 cut(s)	115
Bst2UI	CCWGG	2 cut(s)	496, 652
Bst6I	CTCTTC	2 cut(s)	586, 729
BstACI	GRCGYC	1 cut(s)	408
BstAFI	CTTAAG	1 cut(s)	668
BstAPI	GCANNNNNTGC	1 cut(s)	298
BstAUI	TGTACA	1 cut(s)	543
BstDEI	CTNAG	4 cut(s)	136, 212, 603, 717
BstKTI	GATC	3 cut(s)	772, 784, 829
BstMAI	GTCTC	2 cut(s)	227, 410
BstMBI	GATC	3 cut(s)	769, 781, 826
BstMWI	GCNNNNNNNGC	3 cut(s)	183, 298, 491
BstNI	CCWGG	2 cut(s)	496, 652
BstNSI	RCATGY	1 cut(s)	301
BstSCI	CCNGG	2 cut(s)	494, 650
BstSLI	GKGCMC	1 cut(s)	294
BstV1I	GCAGC	1 cut(s)	256
BstXI	CCANNNNNNTGG	1 cut(s)	103
BsuI	GTATCC	1 cut(s)	737
BsuRI	GGCC	3 cut(s)	107, 347, 366
BtsI	GCAGTG	2 cut(s)	336, 480
BtsIMutI	CAGTG	3 cut(s)	336, 480, 705
CciI	TCATGA	1 cut(s)	340
Cfr13I	GGNCC	1 cut(s)	364
CseI	GACGC	1 cut(s)	787
Csp6I	GTAC	3 cut(s)	41, 313, 544
CviAII	CATG	5 cut(s)	191, 207, 298, 341, 452
CviQI	GTAC	3 cut(s)	41, 313, 544
DdeI	CTNAG	4 cut(s)	136, 212, 603, 717
DpnI	GATC	3 cut(s)	771, 783, 828
DpnII	GATC	3 cut(s)	769, 781, 826
EaeI	YGGCCR	1 cut(s)	105
Eam1104I	CTCTTC	2 cut(s)	586, 729
EarI	CTCTTC	2 cut(s)	586, 729
Eco130I	CCWWGG	1 cut(s)	115
Eco147I	AGGCCT	1 cut(s)	347
Eco31I	GGTCTC	1 cut(s)	227
Eco57I	CTGAAG	1 cut(s)	650
Eco88I	CYCGRG	1 cut(s)	527
EcoO109I	RGGNCCY	1 cut(s)	364
EcoRII	CCWGG	2 cut(s)	494, 650
EcoT14I	CCWWGG	1 cut(s)	115
ErhI	CCWWGG	1 cut(s)	115
FaeI	CATG	5 cut(s)	194, 210, 301, 344, 455
FatI	CATG	5 cut(s)	190, 206, 297, 340, 451
FbaI	TGATCA	1 cut(s)	769
FblI	GTMKAC	2 cut(s)	354, 411
Fnu4HI	GCNGC	2 cut(s)	184, 270
Fsp4HI	GCNGC	2 cut(s)	184, 270
FspBI	CTAG	1 cut(s)	92
GluI	GCNGC	2 cut(s)	184, 270
GsaI	CCCAGC	1 cut(s)	521
GsuI	CTGGAG	1 cut(s)	146
HaeIII	GGCC	3 cut(s)	107, 347, 366
HapII	CCGG	4 cut(s)	174, 180, 266, 588
HgaI	GACGC	1 cut(s)	787
Hin1I	GRCGYC	1 cut(s)	408
Hin1II	CATG	5 cut(s)	194, 210, 301, 344, 455
HincII	GTYRAC	1 cut(s)	412
HindII	GTYRAC	1 cut(s)	412
HinfI	GANTC	7 cut(s)	18, 323, 370, 456, 532, 567, 599
HpaII	CCGG	4 cut(s)	174, 180, 266, 588
HphI	GGTGA	2 cut(s)	367, 779
Hpy166II	GTNNAC	2 cut(s)	355, 412
Hpy188I	TCNGA	3 cut(s)	606, 630, 758
Hpy188III	TCNNGA	1 cut(s)	341
Hpy8I	GTNNAC	2 cut(s)	355, 412
Hpy99I	CGWCG	5 cut(s)	290, 383, 413, 416, 803
HpyAV	CCTTC	3 cut(s)	272, 500, 823
HpyCH4IV	ACGT	3 cut(s)	39, 285, 408
HpyCH4V	TGCA	2 cut(s)	485, 578
HpyF10VI	GCNNNNNNNGC	3 cut(s)	183, 298, 491
HpyF3I	CTNAG	4 cut(s)	136, 212, 603, 717
HpySE526I	ACGT	3 cut(s)	39, 285, 408
Hsp92I	GRCGYC	1 cut(s)	408
Hsp92II	CATG	5 cut(s)	194, 210, 301, 344, 455
Ksp22I	TGATCA	1 cut(s)	769
Kzo9I	GATC	3 cut(s)	769, 781, 826
LmnI	GCTCC	1 cut(s)	182
Lsp1109I	GCAGC	1 cut(s)	256
MaeI	CTAG	1 cut(s)	92
MaeII	ACGT	3 cut(s)	39, 285, 408
MaeIII	GTNAC	4 cut(s)	334, 386, 613, 689
MalI	GATC	3 cut(s)	771, 783, 828
MbiI	CCGCTC	1 cut(s)	741
MboI	GATC	3 cut(s)	769, 781, 826
MboII	GAAGA	3 cut(s)	603, 643, 746
MhlI	GDGCHC	1 cut(s)	294
MlsI	TGGCCA	1 cut(s)	107
MluCI	AATT	2 cut(s)	475, 786
MluNI	TGGCCA	1 cut(s)	107
MlyI	GAGTC	2 cut(s)	317, 541
MnlI	CCTC	5 cut(s)	170, 337, 355, 460, 587
Mox20I	TGGCCA	1 cut(s)	107
MscI	TGGCCA	1 cut(s)	107
MseI	TTAA	1 cut(s)	669
MslI	CAYNNNNRTG	2 cut(s)	101, 698
Msp20I	TGGCCA	1 cut(s)	107
MspA1I	CMGCKG	1 cut(s)	716
MspCI	CTTAAG	1 cut(s)	668
MspI	CCGG	4 cut(s)	174, 180, 266, 588
MspR9I	CCNGG	2 cut(s)	496, 652
Mva1269I	GAATGC	4 cut(s)	12, 485, 578, 640
MvaI	CCWGG	2 cut(s)	496, 652
MwoI	GCNNNNNNNGC	3 cut(s)	183, 298, 491
NdeII	GATC	3 cut(s)	769, 781, 826
NlaIII	CATG	5 cut(s)	194, 210, 301, 344, 455
NlaIV	GGNNCC	1 cut(s)	178
NmeAIII	GCCGAG	3 cut(s)	282, 305, 385
NmuCI	GTSAC	1 cut(s)	613
NspI	RCATGY	1 cut(s)	301
OliI	CACNNNNGTG	2 cut(s)	101, 698
PagI	TCATGA	1 cut(s)	340
PceI	AGGCCT	1 cut(s)	347
PcsI	WCGNNNNNNNCGW	1 cut(s)	45
PctI	GAATGC	4 cut(s)	12, 485, 578, 640
PfeI	GAWTC	5 cut(s)	18, 370, 456, 567, 599
PkrI	GCNGC	2 cut(s)	185, 271
PleI	GAGTC	2 cut(s)	317, 540
PpsI	GAGTC	2 cut(s)	317, 540
Psp6I	CCWGG	2 cut(s)	494, 650
PspFI	CCCAGC	1 cut(s)	517
PspGI	CCWGG	2 cut(s)	494, 650
PspN4I	GGNNCC	1 cut(s)	178
PspPI	GGNCC	1 cut(s)	364
PsrI	GAACNNNNNNTAC	2 cut(s)	33, 65
PvuII	CAGCTG	1 cut(s)	716
RsaI	GTAC	3 cut(s)	42, 314, 545
RsaNI	GTAC	3 cut(s)	41, 313, 544
RseI	CAYNNNNRTG	2 cut(s)	101, 698
SalI	GTCGAC	1 cut(s)	410
SaqAI	TTAA	1 cut(s)	669
SatI	GCNGC	2 cut(s)	184, 270
Sau3AI	GATC	3 cut(s)	769, 781, 826
Sau96I	GGNCC	1 cut(s)	364
SchI	GAGTC	2 cut(s)	317, 541
ScrFI	CCNGG	2 cut(s)	496, 652
SduI	GDGCHC	1 cut(s)	294
SgrDI	CGTCGACG	1 cut(s)	410
SmiMI	CAYNNNNRTG	2 cut(s)	101, 698
SmlI	CTYRAG	1 cut(s)	668
SmoI	CTYRAG	1 cut(s)	668
Sse9I	AATT	2 cut(s)	475, 786
SseBI	AGGCCT	1 cut(s)	347
SsiI	CCGC	2 cut(s)	183, 741
SspMI	CTAG	1 cut(s)	92
StuI	AGGCCT	1 cut(s)	347
StyD4I	CCNGG	2 cut(s)	494, 650
StyI	CCWWGG	1 cut(s)	115
TaiI	ACGT	3 cut(s)	42, 288, 411
TaqI	TCGA	4 cut(s)	16, 126, 411, 808
TasI	AATT	2 cut(s)	475, 786
TatI	WGTACW	2 cut(s)	312, 543
TauI	GCSGC	1 cut(s)	186
TfiI	GAWTC	5 cut(s)	18, 370, 456, 567, 599
Tru1I	TTAA	1 cut(s)	669
Tru9I	TTAA	1 cut(s)	669
TscAI	CASTG	3 cut(s)	336, 487, 705
TseFI	GTSAC	1 cut(s)	613
TseI	GCWGC	1 cut(s)	269
Tsp45I	GTSAC	1 cut(s)	613
TspDTI	ATGAA	7 cut(s)	10, 17, 74, 111, 195, 571, 666
TspRI	CASTG	3 cut(s)	336, 487, 705
Vha464I	CTTAAG	1 cut(s)	668
XceI	RCATGY	1 cut(s)	301
XmiI	GTMKAC	2 cut(s)	354, 411
XspI	CTAG	1 cut(s)	92
ZraI	GACGTC	1 cut(s)	409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.