Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002547

Physical Location & Seq

Genomic Coordinates Reverse (-)

58519701 .. 58522051

Gene Structure 2351 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51130

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGATCGAGAGGCAACAACCTTTCGTTCTCACAATGAAAGCATTGCCAGTACTACAACTCTTGTTTCTAGCCACACTTGTGGCCACAACCCAAGGTTCATTCGAGCATGACATAGCCGACCAAATAATCCATCTCCTCCGGCCAAAATCAGGAGTCGGCGGCAGCCAAGTCGGCAACATTTCATGCCTGAGTTGGCGACTGGGAGTGGAGACCCACAACATCATTGACTGGACGACTATTCCAGCTGCTTGTGAAGGCTACGTCGGGCACTACATGCTCGGCGACCAGTATAGAAAAGACTCGGAAGTGGTTACTCATGAGGCCTATGTCTATGCTGAGGGGCTGAACCTCACCAACGATGGTAACAACTTGTGGGTATTTGACATCGATGAGACTACTCTCTCTAATCTGCCGTACTATGCCGAGCATGGATTCGGGGTGGAGGTATATAATTCAACTGCATTCACTGCCTGGGTCTTGGAAGGCATAGCCCCAGCTTTGCCCGAGAGTCTAAAGCTGTACAAGAAGTTATTGGCTCTTGGAATCAAGGTTGCATTCATAACTGGAAGAGAAGAATCACAGAGAAATGTCACAGAAACCAATCTGAAGAATGTTGGATACGATACCTGGGAAACGCTTGTACTAAAAGATTCATCTTATTCTGGTAGCACAGCAGTGGTGTATAAATCAGCTGAGAGAAAGAAGCTTGAAGAAAGTGGATATAGAATAATCGGAAACATTGGTGATCAATGGAGTGATATAATGGGAACAAACATCGGCAATAGAACCTTCAAGTTGCCTGATCCAATGTATTACATTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002213 GO:0003674 GO:0003824 GO:0003993 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0006793 GO:0006796 GO:0006950 GO:0006952 GO:0006979 GO:0008134 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009611 GO:0009625 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0022626 GO:0032991 GO:0042221 GO:0042578 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046688 GO:0050896 GO:0051704 GO:0051707 GO:1901700 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Acid_phosphat_B

Protein Analysis

274

Amino Acids

30.6

Weight (kDa)

5.09

Isoelectric Point (pI)

36.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acid_phosphat_B	PF03767	57 - 273	2.9e-85	HAD superfamily, subfamily IIIB (Acid phosphatase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002547)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g32551 FvH4_6g32560 FvH4_6g32560 FvH4_6g32570 FvH4_6g32570 FvH4_6g32570
malus_domestica	MD09G1200500.v1.1 MD09G1200900.v1.1 MD09G1201200.v1.1
prunus_persica	Prupe.3G057000_v2.0.a1 Prupe.3G057100_v2.0.a1
pyrus_communis	pycom09g11800 pycom17g19090
rosa_chinensis	RchiOBHm_Chr2g0140951 RchiOBHm_Chr2g0140961 RchiOBHm_Chr2g0140991 RchiOBHm_Chr2g0141021
rosa_laevigata	RLG00000019903 RLG00000019906 RLG00000019907 RLG00000019908
rosa_multiflora	Rmu_sc0003848.1_g000018 Rmu_sc0004769.1_g000010 Rmu_sc0004769.1_g000014
rosa_roxburghii	Rroxscaffold_2G00104300 Rroxscaffold_2G00104330 Rroxscaffold_2G00104340
rosa_rugosa	Rorug02G0365900 Rorug02G0366000 Rorug02G0366200
rosa_samantha	Rh2AG417300 Rh2AG417500 Rh2BG427400 Rh2CG403600 Rh2CG403800 Rh2DG436700 Rh2DG436900
rosa_wichuraiana	Rw2G034140 Rw2G034150 Rw2G034160 Rw2G034170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	159
AclWI	GGATC	1 cut(s)	797
AcoI	YGGCCR	2 cut(s)	81, 140
AcuI	CTGAAG	1 cut(s)	626
AfaI	GTAC	4 cut(s)	51, 416, 521, 642
AfiI	CCNNNNNNNGG	1 cut(s)	149
AgsI	TTSAA	3 cut(s)	456, 710, 793
AjnI	CCWGG	2 cut(s)	470, 626
AleI	CACNNNNGTG	2 cut(s)	77, 674
AluBI	AGCT	6 cut(s)	245, 497, 517, 692, 706, 822
AluI	AGCT	6 cut(s)	245, 497, 517, 692, 706, 822
Alw26I	GTCTC	2 cut(s)	203, 386
AlwI	GGATC	1 cut(s)	797
Ama87I	CYCGRG	1 cut(s)	503
AoxI	GGCC	3 cut(s)	81, 140, 321
ApeKI	GCWGC	2 cut(s)	162, 245
AsuHPI	GGTGA	2 cut(s)	343, 755
AvaI	CYCGRG	1 cut(s)	503
BaeGI	GKGCMC	1 cut(s)	270
BalI	TGGCCA	1 cut(s)	83
BbvCI	CCTCAGC	1 cut(s)	336
BbvI	GCAGC	2 cut(s)	174, 232
BccI	CCATC	2 cut(s)	138, 353
BceAI	ACGGC	1 cut(s)	397
BcgI	CGANNNNNNTGC	2 cut(s)	151, 185
BciT130I	CCWGG	2 cut(s)	472, 628
BciVI	GTATCC	1 cut(s)	611
BclI	TGATCA	1 cut(s)	745
BcoDI	GTCTC	2 cut(s)	203, 386
BfaI	CTAG	1 cut(s)	68
BfuI	GTATCC	1 cut(s)	611
BglI	GCCNNNNNGGC	1 cut(s)	171
BisI	GCNGC	3 cut(s)	160, 163, 246
BlsI	GCNGC	3 cut(s)	161, 164, 247
BmcAI	AGTACT	1 cut(s)	51
Bme1390I	CCNGG	2 cut(s)	472, 628
BmeT110I	CYCGRG	1 cut(s)	503
BmrFI	CCNGG	2 cut(s)	472, 628
BmrI	ACTGGG	1 cut(s)	209
BmuI	ACTGGG	1 cut(s)	209
Bpu10I	CCTNAGC	1 cut(s)	336
Bsa29I	ATCGAT	1 cut(s)	387
BsaI	GGTCTC	1 cut(s)	203
BsaJI	CCNNGG	3 cut(s)	91, 471, 627
Bsc4I	CCNNNNNNNGG	1 cut(s)	149
Bse1I	ACTGG	5 cut(s)	47, 204, 233, 286, 568
Bse3DI	GCAATG	1 cut(s)	41
BseBI	CCWGG	2 cut(s)	472, 628
BseCI	ATCGAT	1 cut(s)	387
BseDI	CCNNGG	3 cut(s)	91, 471, 627
BseLI	CCNNNNNNNGG	1 cut(s)	149
BseMI	GCAATG	1 cut(s)	41
BseMII	CTCAG	3 cut(s)	179, 327, 684
BseNI	ACTGG	5 cut(s)	47, 204, 233, 286, 568
BseRI	GAGGAG	1 cut(s)	125
BseSI	GKGCMC	1 cut(s)	270
BseXI	GCAGC	2 cut(s)	174, 232
BseYI	CCCAGC	1 cut(s)	493
BshFI	GGCC	3 cut(s)	83, 142, 323
BshVI	ATCGAT	1 cut(s)	387
BsiHKCI	CYCGRG	1 cut(s)	503
BsiSI	CCGG	1 cut(s)	139
BslI	CCNNNNNNNGG	1 cut(s)	149
BsmAI	GTCTC	2 cut(s)	203, 386
BsmI	GAATGC	2 cut(s)	461, 554
BsnI	GGCC	3 cut(s)	83, 142, 323
Bso31I	GGTCTC	1 cut(s)	203
BsoBI	CYCGRG	1 cut(s)	503
Bsp1286I	GDGCHC	1 cut(s)	270
Bsp1407I	TGTACA	1 cut(s)	519
Bsp143I	GATC	3 cut(s)	3, 745, 802
BspACI	CCGC	1 cut(s)	159
BspANI	GGCC	3 cut(s)	83, 142, 323
BspCNI	CTCAG	3 cut(s)	180, 328, 685
BspDI	ATCGAT	1 cut(s)	387
BspHI	TCATGA	1 cut(s)	316
BspPI	GGATC	1 cut(s)	797
BspTNI	GGTCTC	1 cut(s)	203
BsrDI	GCAATG	1 cut(s)	41
BsrGI	TGTACA	1 cut(s)	519
BsrI	ACTGG	5 cut(s)	47, 204, 233, 286, 568
BssECI	CCNNGG	3 cut(s)	91, 471, 627
BssMI	GATC	3 cut(s)	3, 745, 802
BssT1I	CCWWGG	1 cut(s)	91
Bst2UI	CCWGG	2 cut(s)	472, 628
Bst6I	CTCTTC	1 cut(s)	562
BstAPI	GCANNNNNTGC	2 cut(s)	274, 467
BstAUI	TGTACA	1 cut(s)	519
BstDEI	CTNAG	3 cut(s)	188, 336, 693
BstKTI	GATC	3 cut(s)	6, 748, 805
BstMAI	GTCTC	2 cut(s)	203, 386
BstMBI	GATC	3 cut(s)	3, 745, 802
BstMWI	GCNNNNNNNGC	3 cut(s)	171, 274, 467
BstNI	CCWGG	2 cut(s)	472, 628
BstNSI	RCATGY	1 cut(s)	277
BstSCI	CCNGG	2 cut(s)	470, 626
BstSLI	GKGCMC	1 cut(s)	270
BstV1I	GCAGC	2 cut(s)	174, 232
BstXI	CCANNNNNNTGG	1 cut(s)	79
Bsu15I	ATCGAT	1 cut(s)	387
BsuI	GTATCC	1 cut(s)	611
BsuRI	GGCC	3 cut(s)	83, 142, 323
BsuTUI	ATCGAT	1 cut(s)	387
BtsI	GCAGTG	2 cut(s)	465, 681
BtsIMutI	CAGTG	2 cut(s)	465, 681
CciI	TCATGA	1 cut(s)	316
ClaI	ATCGAT	1 cut(s)	387
Csp6I	GTAC	4 cut(s)	50, 415, 520, 641
CviAII	CATG	5 cut(s)	107, 183, 274, 317, 428
CviQI	GTAC	4 cut(s)	50, 415, 520, 641
DdeI	CTNAG	3 cut(s)	188, 336, 693
DpnI	GATC	3 cut(s)	5, 747, 804
DpnII	GATC	3 cut(s)	3, 745, 802
EaeI	YGGCCR	2 cut(s)	81, 140
Eam1104I	CTCTTC	1 cut(s)	562
EarI	CTCTTC	1 cut(s)	562
Eco130I	CCWWGG	1 cut(s)	91
Eco147I	AGGCCT	1 cut(s)	323
Eco31I	GGTCTC	1 cut(s)	203
Eco57I	CTGAAG	1 cut(s)	626
Eco88I	CYCGRG	1 cut(s)	503
EcoRII	CCWGG	2 cut(s)	470, 626
EcoT14I	CCWWGG	1 cut(s)	91
ErhI	CCWWGG	1 cut(s)	91
FaeI	CATG	5 cut(s)	110, 186, 277, 320, 431
FatI	CATG	5 cut(s)	106, 182, 273, 316, 427
FbaI	TGATCA	1 cut(s)	745
Fnu4HI	GCNGC	3 cut(s)	160, 163, 246
Fsp4HI	GCNGC	3 cut(s)	160, 163, 246
FspBI	CTAG	1 cut(s)	68
GluI	GCNGC	3 cut(s)	160, 163, 246
GsaI	CCCAGC	1 cut(s)	497
HaeIII	GGCC	3 cut(s)	83, 142, 323
HapII	CCGG	1 cut(s)	139
Hin1II	CATG	5 cut(s)	110, 186, 277, 320, 431
HindIII	AAGCTT	1 cut(s)	704
HinfI	GANTC	7 cut(s)	153, 299, 432, 508, 543, 575, 650
HpaII	CCGG	1 cut(s)	139
HphI	GGTGA	2 cut(s)	343, 755
Hpy188I	TCNGA	3 cut(s)	304, 606, 734
Hpy188III	TCNNGA	3 cut(s)	7, 150, 317
Hpy99I	CGWCG	1 cut(s)	266
HpyAV	CCTTC	3 cut(s)	248, 476, 799
HpyCH4IV	ACGT	1 cut(s)	261
HpyCH4V	TGCA	2 cut(s)	461, 554
HpyF10VI	GCNNNNNNNGC	3 cut(s)	171, 274, 467
HpyF3I	CTNAG	3 cut(s)	188, 336, 693
HpySE526I	ACGT	1 cut(s)	261
Hsp92II	CATG	5 cut(s)	110, 186, 277, 320, 431
Ksp22I	TGATCA	1 cut(s)	745
Kzo9I	GATC	3 cut(s)	3, 745, 802
Lsp1109I	GCAGC	2 cut(s)	174, 232
MaeI	CTAG	1 cut(s)	68
MaeII	ACGT	1 cut(s)	261
MaeIII	GTNAC	3 cut(s)	310, 362, 589
MalI	GATC	3 cut(s)	5, 747, 804
MboI	GATC	3 cut(s)	3, 745, 802
MboII	GAAGA	4 cut(s)	579, 584, 619, 722
MhlI	GDGCHC	1 cut(s)	270
MlsI	TGGCCA	1 cut(s)	83
MluCI	AATT	1 cut(s)	451
MluNI	TGGCCA	1 cut(s)	83
MlyI	GAGTC	3 cut(s)	162, 293, 517
MmeI	TCCRAC	1 cut(s)	595
MnlI	CCTC	6 cut(s)	3, 146, 313, 331, 359, 436
Mox20I	TGGCCA	1 cut(s)	83
MscI	TGGCCA	1 cut(s)	83
MslI	CAYNNNNRTG	2 cut(s)	77, 674
Msp20I	TGGCCA	1 cut(s)	83
MspA1I	CMGCKG	2 cut(s)	245, 692
MspI	CCGG	1 cut(s)	139
MspR9I	CCNGG	2 cut(s)	472, 628
Mva1269I	GAATGC	2 cut(s)	461, 554
MvaI	CCWGG	2 cut(s)	472, 628
MwoI	GCNNNNNNNGC	3 cut(s)	171, 274, 467
NdeII	GATC	3 cut(s)	3, 745, 802
NlaIII	CATG	5 cut(s)	110, 186, 277, 320, 431
NmeAIII	GCCGAG	2 cut(s)	258, 448
NmuCI	GTSAC	1 cut(s)	589
NspI	RCATGY	1 cut(s)	277
OliI	CACNNNNGTG	2 cut(s)	77, 674
PagI	TCATGA	1 cut(s)	316
PceI	AGGCCT	1 cut(s)	323
PctI	GAATGC	2 cut(s)	461, 554
PfeI	GAWTC	4 cut(s)	432, 543, 575, 650
PkrI	GCNGC	3 cut(s)	161, 164, 247
PleI	GAGTC	3 cut(s)	161, 293, 516
PpsI	GAGTC	3 cut(s)	161, 293, 516
Psp6I	CCWGG	2 cut(s)	470, 626
PspFI	CCCAGC	1 cut(s)	493
PspGI	CCWGG	2 cut(s)	470, 626
PvuII	CAGCTG	2 cut(s)	245, 692
RsaI	GTAC	4 cut(s)	51, 416, 521, 642
RsaNI	GTAC	4 cut(s)	50, 415, 520, 641
RseI	CAYNNNNRTG	2 cut(s)	77, 674
SatI	GCNGC	3 cut(s)	160, 163, 246
Sau3AI	GATC	3 cut(s)	3, 745, 802
ScaI	AGTACT	1 cut(s)	51
SchI	GAGTC	3 cut(s)	162, 293, 517
ScrFI	CCNGG	2 cut(s)	472, 628
SduI	GDGCHC	1 cut(s)	270
SmiMI	CAYNNNNRTG	2 cut(s)	77, 674
Sse9I	AATT	1 cut(s)	451
SseBI	AGGCCT	1 cut(s)	323
SsiI	CCGC	1 cut(s)	159
SspMI	CTAG	1 cut(s)	68
StuI	AGGCCT	1 cut(s)	323
StyD4I	CCNGG	2 cut(s)	470, 626
StyI	CCWWGG	1 cut(s)	91
TaiI	ACGT	1 cut(s)	264
TaqI	TCGA	3 cut(s)	6, 102, 387
TasI	AATT	1 cut(s)	451
TatI	WGTACW	3 cut(s)	49, 519, 640
TauI	GCSGC	1 cut(s)	162
TfiI	GAWTC	4 cut(s)	432, 543, 575, 650
TscAI	CASTG	2 cut(s)	472, 681
TseFI	GTSAC	1 cut(s)	589
TseI	GCWGC	2 cut(s)	162, 245
Tsp45I	GTSAC	1 cut(s)	589
TspDTI	ATGAA	5 cut(s)	50, 87, 171, 547, 642
TspRI	CASTG	2 cut(s)	472, 681
XceI	RCATGY	1 cut(s)	277
XspI	CTAG	1 cut(s)	68
ZrmI	AGTACT	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.