Rh2AG417600

Belongs to the universal ribosomal protein uS9 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0013162
Physical Location & Seq
Forward (+)
62052617 .. 62058412
5796 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG417600.1

Sequence Viewer

Length: 1044 bp
ATGCTCTCTCGTCTCCTCCCCAAACCCTCACATTTCTCTCTCCTAACCCGAATCTCCACAAAATTCCACCCATGTCCCCACCCCCAATTCCCCTCCCCTCCCCAAAACCCTACCTTCACCACCTTCCTCCCCAGGTTCTTCTCCGCCGGCGGCGACGGCAACAACGGCCAATCCCCGCCCGACGTCTGGAACCTTTCCAAGGAAACCGATGAGAACTTCGACCCTCTGTTCGGCGAAAGCTCCGGTGACGTCTCCGGGATAGCCGATTCGTGGACCAAATCGACGGGCGGCGATGAGTGGGAGACGGTGCCGGGGTTTAGGCCGTGGAGCTTGGGAGGAGAGGAAGATAAGGGCGACGATTTGTTTCAAGTCGGCGATGGCGTTCAAACTAGGACTAGTGTGGAGAGTGATCAGGAGGATGAGGGTAAGAGGATAGAGGAGGCTAAGAGGCTTGAGAAAGAGGAGAAGGAGCTCACTGCTGTTCTTAAAGGTCCAAATCGTGCATTTGGTGACCTTGTTGCTGCGTCTGGAATCACAGATGAAATGCTTGACAGTTTGATTGCATTGAAGGATTTTCGAGGGATAAAGGGATTACCTCCACTACATGAAATAGAAGACATTCGCTATCAGAAAAACACAAGTAAATCTTCGAGAGCTGATATAGAGCGCCAGAAACAGGAGGAAGTTGCCAAAGCAAGAGTGAGACTAGTGGACGACAAGGGAAGAGCTTATGGAACAGGAAGAAGGAAATGCAGTATAGCCCGTGTCTGGATTCAACCTGGTGATGGTAATTTCGTCATCAACGATAAACAGTTTGATGTCTATTTTCCAATGCTTGATCATCGCGCTGCAATCCTTCGACCGTTCTCTGAGACAAAAACTTTGGGACTTTGGGACATCAATTGCACTGTTCAAGGGGGTGGCCTCTCAGGTAAATCAAAGACCTTTGCATCTTATTACGACTTATATGTTATATTGTGTTCAACTGGTGTTTCCCTATTTTATCCTTGTACTTGCCGCTTATTATATTGTATGCTGATATAA

Protein Analysis

347

Amino Acids

38.69

Weight (kDa)

5.45

Isoelectric Point (pI)

43.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S9 PF00380 247 - 314 3.2e-17 Ribosomal protein S9/S16
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013162)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G49080
fragaria_vesca FvH4_6g32580
malus_domestica MD09G1200300.v1.1 MD15G1412900.v1.1
prunus_persica Prupe.3G056900_v2.0.a1
pyrus_communis pycom09g11790 pycom15g36770
rosa_chinensis RchiOBHm_Chr2g0141031
rosa_laevigata RLG00000019909
rosa_multiflora Rmu_sc0004769.1_g000015 Rmu_sc0012897.1_g000007
rosa_roxburghii Rroxscaffold_2G00104270
rosa_rugosa Rorug02G0366200
rosa_samantha Rh2AG417600 Rh2BG427500 Rh2CG403900 Rh2DG437000
rosa_wichuraiana Rw2G034180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 186, 252
AccB1I GGYRCC 1 cut(s) 307
AccII CGCG 1 cut(s) 846
AciI CCGC 5 cut(s) 144, 150, 176, 288, 1018
AcoI YGGCCR 1 cut(s) 166
AcsI RAATTY 1 cut(s) 62
AcyI GRCGYC 2 cut(s) 183, 249
AfaI GTAC 1 cut(s) 1012
AfiI CCNNNNNNNGG 7 cut(s) 186, 199, 230, 270, 676, 768, 785
AgsI TTSAA 6 cut(s) 368, 386, 568, 776, 914, 984
AhlI ACTAGT 2 cut(s) 395, 706
AjnI CCWGG 2 cut(s) 131, 778
AluBI AGCT 5 cut(s) 240, 330, 472, 656, 728
AluI AGCT 5 cut(s) 240, 330, 472, 656, 728
Alw21I GWGCWC 1 cut(s) 474
Alw26I GTCTC 5 cut(s) 17, 256, 296, 697, 866
AoxI GGCC 3 cut(s) 166, 320, 922
ApeKI GCWGC 2 cut(s) 521, 848
ApoI RAATTY 1 cut(s) 62
ArsI GACNNNNNNTTYG 4 cut(s) 212, 244, 865, 897
Asp700I GAANNNNTTC 1 cut(s) 618
AspLEI GCGC 2 cut(s) 669, 848
AspS9I GGNCC 2 cut(s) 273, 491
AsuC2I CCSGG 2 cut(s) 256, 312
AsuHPI GGTGA 4 cut(s) 109, 257, 521, 794
AvaII GGWCC 2 cut(s) 273, 491
BanI GGYRCC 1 cut(s) 307
BanII GRGCYC 1 cut(s) 474
BbsI GAAGAC 1 cut(s) 621
Bbv12I GWGCWC 1 cut(s) 474
BbvI GCAGC 2 cut(s) 508, 835
BccI CCATC 2 cut(s) 371, 779
BceAI ACGGC 3 cut(s) 172, 181, 307
BciT130I CCWGG 2 cut(s) 133, 780
BclI TGATCA 2 cut(s) 409, 838
BcnI CCSGG 2 cut(s) 256, 312
BcoDI GTCTC 5 cut(s) 17, 256, 296, 697, 866
BcuI ACTAGT 2 cut(s) 395, 706
BfaI CTAG 3 cut(s) 390, 396, 707
BfoI RGCGCY 1 cut(s) 670
BisI GCNGC 5 cut(s) 151, 289, 522, 849, 1018
BlsI GCNGC 5 cut(s) 152, 290, 523, 850, 1019
Bme1390I CCNGG 4 cut(s) 133, 256, 312, 780
Bme18I GGWCC 2 cut(s) 273, 491
BmgT120I GGNCC 2 cut(s) 273, 491
BmiI GGNNCC 2 cut(s) 191, 309
BmrFI CCNGG 4 cut(s) 133, 256, 312, 780
BmsI GCATC 1 cut(s) 959
BpiI GAAGAC 1 cut(s) 621
BpuEI CTTGAG 1 cut(s) 473
BpuMI CCSGG 2 cut(s) 256, 312
BsaHI GRCGYC 2 cut(s) 183, 249
BsaJI CCNNGG 4 cut(s) 131, 198, 311, 323
BsaWI WCCGGW 1 cut(s) 242
Bsc4I CCNNNNNNNGG 7 cut(s) 186, 199, 230, 270, 676, 768, 785
Bse118I RCCGGY 1 cut(s) 146
Bse1I ACTGG 1 cut(s) 991
BseBI CCWGG 2 cut(s) 133, 780
BseDI CCNNGG 4 cut(s) 131, 198, 311, 323
BseGI GGATG 1 cut(s) 424
BseLI CCNNNNNNNGG 7 cut(s) 186, 199, 230, 270, 676, 768, 785
BseMII CTCAG 2 cut(s) 861, 942
BseNI ACTGG 1 cut(s) 991
BseRI GAGGAG 4 cut(s) 5, 351, 452, 476
BseXI GCAGC 2 cut(s) 508, 835
Bsh1236I CGCG 1 cut(s) 846
Bsh1285I CGRYCG 1 cut(s) 863
BshFI GGCC 3 cut(s) 168, 322, 924
BshNI GGYRCC 1 cut(s) 307
BsiEI CGRYCG 1 cut(s) 863
BsiHKAI GWGCWC 1 cut(s) 474
BsiSI CCGG 4 cut(s) 147, 243, 255, 311
BslFI GGGAC 3 cut(s) 60, 900, 908
BslI CCNNNNNNNGG 7 cut(s) 186, 199, 230, 270, 676, 768, 785
BsmAI GTCTC 5 cut(s) 17, 256, 296, 697, 866
BsmBI CGTCTC 3 cut(s) 17, 256, 296
BsmFI GGGAC 3 cut(s) 60, 900, 908
BsnI GGCC 3 cut(s) 168, 322, 924
Bsp1286I GDGCHC 1 cut(s) 474
Bsp143I GATC 2 cut(s) 409, 838
BspACI CCGC 5 cut(s) 144, 150, 176, 288, 1018
BspANI GGCC 3 cut(s) 168, 322, 924
BspCNI CTCAG 2 cut(s) 862, 941
BspFNI CGCG 1 cut(s) 846
BspLI GGNNCC 2 cut(s) 191, 309
BspQI GCTCTTC 1 cut(s) 718
BspT107I GGYRCC 1 cut(s) 307
BsrFI RCCGGY 1 cut(s) 146
BsrI ACTGG 1 cut(s) 991
BssAI RCCGGY 1 cut(s) 146
BssECI CCNNGG 4 cut(s) 131, 198, 311, 323
BssMI GATC 2 cut(s) 409, 838
BssNI GRCGYC 2 cut(s) 183, 249
BssT1I CCWWGG 1 cut(s) 198
Bst2UI CCWGG 2 cut(s) 133, 780
Bst4CI ACNGT 5 cut(s) 307, 554, 813, 864, 910
Bst6I CTCTTC 1 cut(s) 718
BstACI GRCGYC 2 cut(s) 183, 249
BstC8I GCNNGC 1 cut(s) 148
BstDEI CTNAG 3 cut(s) 444, 870, 928
BstDSI CCRYGG 1 cut(s) 323
BstEII GGTNACC 1 cut(s) 509
BstENI CCTNNNNNAGG 1 cut(s) 197
BstF5I GGATG 1 cut(s) 424
BstFNI CGCG 1 cut(s) 846
BstH2I RGCGCY 1 cut(s) 670
BstHHI GCGC 2 cut(s) 669, 848
BstKTI GATC 2 cut(s) 412, 841
BstMAI GTCTC 5 cut(s) 17, 256, 296, 697, 866
BstMBI GATC 2 cut(s) 409, 838
BstMCI CGRYCG 1 cut(s) 863
BstMWI GCNNNNNNNGC 2 cut(s) 156, 165
BstNI CCWGG 2 cut(s) 133, 780
BstPI GGTNACC 1 cut(s) 509
BstSCI CCNGG 4 cut(s) 131, 254, 310, 778
BstUI CGCG 1 cut(s) 846
BstV1I GCAGC 2 cut(s) 508, 835
BstV2I GAAGAC 1 cut(s) 621
BsuRI GGCC 3 cut(s) 168, 322, 924
BtgI CCRYGG 1 cut(s) 323
BtgZI GCGATG 3 cut(s) 306, 390, 827
BtsCI GGATG 1 cut(s) 424
BtsI GCAGTG 1 cut(s) 474
BtsIMutI CAGTG 2 cut(s) 474, 906
Cac8I GCNNGC 1 cut(s) 148
CfoI GCGC 2 cut(s) 669, 848
Cfr10I RCCGGY 1 cut(s) 146
Cfr13I GGNCC 2 cut(s) 273, 491
CseI GACGC 1 cut(s) 513
CsiI ACCWGGT 1 cut(s) 778
Csp6I GTAC 1 cut(s) 1011
CviAII CATG 2 cut(s) 72, 605
CviQI GTAC 1 cut(s) 1011
DdeI CTNAG 3 cut(s) 444, 870, 928
DpnI GATC 2 cut(s) 411, 840
DpnII GATC 2 cut(s) 409, 838
EaeI YGGCCR 1 cut(s) 166
Eam1104I CTCTTC 1 cut(s) 718
EarI CTCTTC 1 cut(s) 718
EciI GGCGGA 1 cut(s) 133
Ecl136II GAGCTC 1 cut(s) 472
Eco130I CCWWGG 1 cut(s) 198
Eco24I GRGCYC 1 cut(s) 474
Eco47I GGWCC 2 cut(s) 273, 491
Eco53kI GAGCTC 1 cut(s) 472
Eco91I GGTNACC 1 cut(s) 509
EcoICRI GAGCTC 1 cut(s) 472
EcoNI CCTNNNNNAGG 1 cut(s) 197
EcoO65I GGTNACC 1 cut(s) 509
EcoRII CCWGG 2 cut(s) 131, 778
EcoT14I CCWWGG 1 cut(s) 198
EcoT38I GRGCYC 1 cut(s) 474
ErhI CCWWGG 1 cut(s) 198
Esp3I CGTCTC 3 cut(s) 17, 256, 296
FaeI CATG 2 cut(s) 75, 608
FalI AAGNNNNNCTT 2 cut(s) 631, 663
FaqI GGGAC 3 cut(s) 60, 900, 908
FatI CATG 2 cut(s) 71, 604
FauI CCCGC 1 cut(s) 183
FbaI TGATCA 2 cut(s) 409, 838
Fnu4HI GCNGC 5 cut(s) 151, 289, 522, 849, 1018
FokI GGATG 1 cut(s) 431
FriOI GRGCYC 1 cut(s) 474
Fsp4HI GCNGC 5 cut(s) 151, 289, 522, 849, 1018
FspBI CTAG 3 cut(s) 390, 396, 707
GlaI GCGC 2 cut(s) 668, 847
GluI GCNGC 5 cut(s) 151, 289, 522, 849, 1018
HaeII RGCGCY 1 cut(s) 670
HaeIII GGCC 3 cut(s) 168, 322, 924
HapII CCGG 4 cut(s) 147, 243, 255, 311
HgaI GACGC 1 cut(s) 513
HhaI GCGC 2 cut(s) 669, 848
Hin1I GRCGYC 2 cut(s) 183, 249
Hin1II CATG 2 cut(s) 75, 608
Hin6I GCGC 2 cut(s) 667, 846
HinP1I GCGC 2 cut(s) 667, 846
HinfI GANTC 4 cut(s) 51, 266, 531, 772
HpaII CCGG 4 cut(s) 147, 243, 255, 311
HphI GGTGA 4 cut(s) 109, 257, 521, 794
Hpy166II GTNNAC 2 cut(s) 273, 712
Hpy188I TCNGA 2 cut(s) 630, 871
Hpy188III TCNNGA 5 cut(s) 187, 413, 528, 651, 769
Hpy8I GTNNAC 2 cut(s) 273, 712
Hpy99I CGWCG 4 cut(s) 158, 185, 286, 359
HpyAV CCTTC 6 cut(s) 124, 133, 460, 562, 738, 866
HpyCH4III ACNGT 5 cut(s) 307, 554, 813, 864, 910
HpyCH4IV ACGT 2 cut(s) 183, 249
HpyCH4V TGCA 6 cut(s) 503, 563, 753, 851, 906, 950
HpyF10VI GCNNNNNNNGC 2 cut(s) 156, 165
HpyF3I CTNAG 3 cut(s) 444, 870, 928
HpySE526I ACGT 2 cut(s) 183, 249
Hsp92I GRCGYC 2 cut(s) 183, 249
Hsp92II CATG 2 cut(s) 75, 608
HspAI GCGC 2 cut(s) 667, 846
KroI GCCGGC 1 cut(s) 146
KroNI GCCGGC 1 cut(s) 148
Ksp22I TGATCA 2 cut(s) 409, 838
Kzo9I GATC 2 cut(s) 409, 838
LguI GCTCTTC 1 cut(s) 718
LmnI GCTCC 3 cut(s) 245, 327, 469
Lsp1109I GCAGC 2 cut(s) 508, 835
LweI GCATC 1 cut(s) 959
MabI ACCWGGT 1 cut(s) 778
MaeI CTAG 3 cut(s) 390, 396, 707
MaeII ACGT 2 cut(s) 183, 249
MaeIII GTNAC 2 cut(s) 245, 509
MalI GATC 2 cut(s) 411, 840
MboI GATC 2 cut(s) 409, 838
MboII GAAGA 6 cut(s) 130, 356, 626, 639, 735, 753
MfeI CAATTG 1 cut(s) 901
MhlI GDGCHC 1 cut(s) 474
MluCI AATT 4 cut(s) 62, 86, 790, 901
MreI CGCCGGCG 1 cut(s) 146
MroNI GCCGGC 1 cut(s) 146
MroXI GAANNNNTTC 1 cut(s) 618
MseI TTAA 1 cut(s) 486
MspI CCGG 4 cut(s) 147, 243, 255, 311
MspR9I CCNGG 4 cut(s) 133, 256, 312, 780
MunI CAATTG 1 cut(s) 901
MvaI CCWGG 2 cut(s) 133, 780
MvnI CGCG 1 cut(s) 846
MwoI GCNNNNNNNGC 2 cut(s) 156, 165
NaeI GCCGGC 1 cut(s) 148
NciI CCSGG 2 cut(s) 256, 312
NdeII GATC 2 cut(s) 409, 838
NgoMIV GCCGGC 1 cut(s) 146
NlaIII CATG 2 cut(s) 75, 608
NlaIV GGNNCC 2 cut(s) 191, 309
NmuCI GTSAC 2 cut(s) 245, 509
PciSI GCTCTTC 1 cut(s) 718
PcsI WCGNNNNNNNCGW 2 cut(s) 378, 801
PdiI GCCGGC 1 cut(s) 148
PdmI GAANNNNTTC 1 cut(s) 618
PfeI GAWTC 4 cut(s) 51, 266, 531, 772
PfoI TCCNGGA 1 cut(s) 254
PkrI GCNGC 5 cut(s) 152, 290, 523, 850, 1019
Psp124BI GAGCTC 1 cut(s) 474
Psp6I CCWGG 2 cut(s) 131, 778
PspEI GGTNACC 1 cut(s) 509
PspGI CCWGG 2 cut(s) 131, 778
PspN4I GGNNCC 2 cut(s) 191, 309
PspPI GGNCC 2 cut(s) 273, 491
RsaI GTAC 1 cut(s) 1012
RsaNI GTAC 1 cut(s) 1011
SacI GAGCTC 1 cut(s) 474
SapI GCTCTTC 1 cut(s) 718
SaqAI TTAA 1 cut(s) 486
SatI GCNGC 5 cut(s) 151, 289, 522, 849, 1018
Sau3AI GATC 2 cut(s) 409, 838
Sau96I GGNCC 2 cut(s) 273, 491
ScrFI CCNGG 4 cut(s) 133, 256, 312, 780
SduI GDGCHC 1 cut(s) 474
SexAI ACCWGGT 1 cut(s) 778
SfaNI GCATC 1 cut(s) 959
SgrAI CRCCGGYG 1 cut(s) 146
SinI GGWCC 2 cut(s) 273, 491
SmlI CTYRAG 1 cut(s) 452
SmoI CTYRAG 1 cut(s) 452
SpeI ACTAGT 2 cut(s) 395, 706
Sse9I AATT 4 cut(s) 62, 86, 790, 901
SsiI CCGC 5 cut(s) 144, 150, 176, 288, 1018
SspMI CTAG 3 cut(s) 390, 396, 707
SstI GAGCTC 1 cut(s) 474
StyD4I CCNGG 4 cut(s) 131, 254, 310, 778
StyI CCWWGG 1 cut(s) 198
TaaI ACNGT 5 cut(s) 307, 554, 813, 864, 910
TaiI ACGT 2 cut(s) 186, 252
TaqI TCGA 5 cut(s) 219, 281, 577, 650, 859
TasI AATT 4 cut(s) 62, 86, 790, 901
TatI WGTACW 1 cut(s) 1010
TauI GCSGC 3 cut(s) 153, 291, 1020
TfiI GAWTC 4 cut(s) 51, 266, 531, 772
Tru1I TTAA 1 cut(s) 486
Tru9I TTAA 1 cut(s) 486
TscAI CASTG 2 cut(s) 481, 913
TseFI GTSAC 2 cut(s) 245, 509
TseI GCWGC 2 cut(s) 521, 848
Tsp45I GTSAC 2 cut(s) 245, 509
TspDTI ATGAA 2 cut(s) 555, 621
TspRI CASTG 2 cut(s) 481, 913
VpaK11BI GGWCC 2 cut(s) 273, 491
XagI CCTNNNNNAGG 1 cut(s) 197
XapI RAATTY 1 cut(s) 62
XmnI GAANNNNTTC 1 cut(s) 618
XspI CTAG 3 cut(s) 390, 396, 707
ZraI GACGTC 2 cut(s) 184, 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.