Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003631

Physical Location & Seq

Genomic Coordinates Reverse (-)

18474305 .. 18477032

Gene Structure 2728 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G49810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1347 bp

ATGCCGATGTTTCAGCCGTTAAAGAGAGATGGGTTAATAGGATTTGAAGGTGGTGGTGATGGGCAAGTCTTAGATCTGGATACTGCAGTGAAAGATGGAGTTCTCGGTGGTGTTAATGGTGGTGGTGTTGGAGTTGTTGATGAGAAATTGGATCTGAAGAAGATGATAAAGGAGCTAGATTTACAAGATATACCTTCTGTTTTCATTTGTCCTATCTCCTTAGAGCCGATGCAAGATCCTGTGACTTTGTGTACTGGTCAAACCTATGAAAGGTTAAACATTCACAAATGGTTTAACCTAGGTCACTTGACTTGTCCTACTACAATGCAAGAGCTTTGGGATGATACGGTAACTCCTAATAAAACTCTTCATCATTTGATCTATACTTGGTTCTCTCAGAAGTATGTGTTGATGAAGAAACGTTCTGAGGATGTTCAAGGACGAGCTATTGAGATTTTGGGGACTTTGAAGAAAGCTAAAGGTCAAGCTAGGGTTCATGCTTTGAGTGAGCTTAAACAGATTGTTATTGCTCATCTTATGGCGAGGAAGACTGTTGTTGAAGAAGGTGGTGTCTCTGTGATCTCTTCTCTTTTGGGTCCTTTTACTTCTCATGCTGTTGGATCTGAGGTTGTTGCTATTCTTGTGAGTCTTGATCTTGATTCTGATTCGAAATCCGGCTTGATGCAACCAGCTAAGGTTTCTTTGATTGTTGATATGTTGAATGATGGATCTAATGAGACTAAGATCAATTGTGCTAGATTGATTAGAGGATTGGTGGAAGAGAAAGGGTTTAGAGCAGAGCTTGTTTCAAGTCATAGTTTGCTTGTTGGGTTAATGAGATTGGTTAAGGATAAGAGACATAGAAATGGAGTATCTCCTGCACTTCGGTTGCTTAAACCGATTTCGGTTCATAAACAAGTTCGAAGCTTGATGGTTAGCATTGGAGCAGTGCCTCAATTAGTTGATATCTTACCGTCTTTAGACCCGGAATGTTTGGAGTTAGCTCTGTTTGTTCTTGATGCTTTGTGTACAGACGTGGAAGGAAGAGTTGCTGTCAAAGACTCTGCAAACACAATACCTTATACAGTTAGGGTGCTGATGAGGGTGTCTGAGAATTGCACTAACTACGCGCTGTCGATTCTTTGGTCTGTCTGCAAATTAGCTCCAGAAGAATGTTCACCACTTGCTGTTGAGGTTGGTCTTGCTGCAAAGCTGTTACTCGTGATCCAGAGCGGGTGTGATGCAGCGTTGAAGCAGCGGTCAGCAGAGCTACTTAAGCTTTGTAGTCTACATTATTCAGACACCATGTTTATTTCCAAATGCAAACTCACAAGGACAATCCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0033554 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0047484 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0050896 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071214 GO:0071470 GO:0071472 GO:0071704 GO:0080134 GO:0104004 GO:0140096 GO:1901000 GO:1901001 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

U-box

Protein Analysis

448

Amino Acids

48.99

Weight (kDa)

7.14

Isoelectric Point (pI)

42.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
U-box	PF04564	64 - 134	4e-14	U-box domain
ARM_PUB	PF25598	154 - 448	9.4e-103	Plant U-box protein ARM repeat region
ARM_ARMC5	PF24768	181 - 388	2.2e-08	ARMC5

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003631)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49810 AT5G65920 AT5G65920
fragaria_vesca	FvH4_1g18010 FvH4_1g18010 FvH4_1g18010 FvH4_2g32810
malus_domestica	MD08G1079800.v1.1 MD15G1066700.v1.1
prunus_persica	Prupe.1G420500_v2.0.a1 Prupe.6G218400_v2.0.a1
pyrus_communis	pycom08g06590 pycom15g06330
rosa_chinensis	RchiOBHm_Chr2g0108501 RchiOBHm_Chr6g0309891
rosa_laevigata	RLG00000010526 RLG00000017673
rosa_multiflora	Rmu_co8433595.1_g000001 Rmu_sc0000294.1_g000001 Rmu_sc0002372.1_g000052 Rmu_sc0009846.1_g000001
rosa_roxburghii	Rroxscaffold_2G00135090 Rroxscaffold_7G00159070
rosa_rugosa	Rorug02G0153700 Rorug06G0375700.1
rosa_samantha	Rh2AG202600 Rh2BG215500 Rh2CG206700 Rh2DG209800 Rh6AG489500 Rh6BG498900 Rh6CG503700 Rh6DG489900
rosa_wichuraiana	Rw2G016190 Rw6G042600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	1233
AccI	GTMKAC	1 cut(s)	1288
AccII	CGCG	1 cut(s)	1130
AciI	CCGC	2 cut(s)	1233, 1258
AclI	AACGTT	1 cut(s)	421
AclWI	GGATC	5 cut(s)	159, 230, 628, 736, 1219
AcuI	CTGAAG	1 cut(s)	176
AfaI	GTAC	2 cut(s)	253, 1030
AfiI	CCNNNNNNNGG	1 cut(s)	270
AflII	CTTAAG	1 cut(s)	1274
AgsI	TTSAA	7 cut(s)	47, 437, 469, 560, 721, 810, 1252
AjiI	CACGTC	1 cut(s)	1036
Alw26I	GTCTC	3 cut(s)	577, 731, 850
AlwI	GGATC	5 cut(s)	159, 230, 628, 736, 1219
ApeKI	GCWGC	3 cut(s)	1205, 1244, 1255
AspA2I	CCTAGG	1 cut(s)	298
AspLEI	GCGC	1 cut(s)	1132
AspS9I	GGNCC	1 cut(s)	596
AsuC2I	CCSGG	1 cut(s)	986
AsuHPI	GGTGA	2 cut(s)	68, 1170
AsuII	TTCGAA	2 cut(s)	668, 922
AvaII	GGWCC	1 cut(s)	596
AvrII	CCTAGG	1 cut(s)	298
BaeI	ACNNNNGTAYC	2 cut(s)	72, 105
BauI	CACGAG	1 cut(s)	1220
BbsI	GAAGAC	1 cut(s)	554
BbvI	GCAGC	3 cut(s)	1192, 1256, 1267
BccI	CCATC	5 cut(s)	23, 53, 89, 719, 925
BciVI	GTATCC	1 cut(s)	73
BcnI	CCSGG	1 cut(s)	986
BcoDI	GTCTC	3 cut(s)	577, 731, 850
BfaI	CTAG	4 cut(s)	176, 299, 489, 756
BfmI	CTRYAG	1 cut(s)	84
BfrI	CTTAAG	1 cut(s)	1274
BfuI	GTATCC	1 cut(s)	73
BglII	AGATCT	1 cut(s)	73
BisI	GCNGC	3 cut(s)	1206, 1245, 1256
BlnI	CCTAGG	1 cut(s)	298
BlsI	GCNGC	3 cut(s)	1207, 1246, 1257
Bme1390I	CCNGG	1 cut(s)	986
Bme18I	GGWCC	1 cut(s)	596
BmgBI	CACGTC	1 cut(s)	1036
BmgT120I	GGNCC	1 cut(s)	596
BmiI	GGNNCC	1 cut(s)	597
BmrFI	CCNGG	1 cut(s)	986
BmsI	GCATC	4 cut(s)	219, 672, 1009, 1231
BpiI	GAAGAC	1 cut(s)	554
BpmI	CTGGAG	1 cut(s)	1149
Bpu10I	CCTNAGC	1 cut(s)	693
Bpu14I	TTCGAA	2 cut(s)	668, 922
BpuMI	CCSGG	1 cut(s)	986
BsaJI	CCNNGG	1 cut(s)	298
BsaXI	ACNNNNNCTCC	2 cut(s)	337, 367
Bsc4I	CCNNNNNNNGG	1 cut(s)	270
Bse1I	ACTGG	1 cut(s)	259
BseDI	CCNNGG	1 cut(s)	298
BseGI	GGATG	2 cut(s)	346, 436
BseLI	CCNNNNNNNGG	1 cut(s)	270
BseMII	CTCAG	4 cut(s)	410, 417, 615, 1101
BseNI	ACTGG	1 cut(s)	259
BseXI	GCAGC	3 cut(s)	1192, 1256, 1267
BsgI	GTGCAG	1 cut(s)	864
Bsh1236I	CGCG	1 cut(s)	1130
BsiSI	CCGG	2 cut(s)	675, 986
BslFI	GGGAC	1 cut(s)	475
BslI	CCNNNNNNNGG	1 cut(s)	270
BsmAI	GTCTC	3 cut(s)	577, 731, 850
BsmFI	GGGAC	1 cut(s)	475
Bsp119I	TTCGAA	2 cut(s)	668, 922
Bsp1407I	TGTACA	1 cut(s)	1028
BspACI	CCGC	2 cut(s)	1233, 1258
BspCNI	CTCAG	4 cut(s)	409, 418, 616, 1102
BspFNI	CGCG	1 cut(s)	1130
BspLI	GGNNCC	1 cut(s)	597
BspMAI	CTGCAG	1 cut(s)	88
BspPI	GGATC	5 cut(s)	159, 230, 628, 736, 1219
BspT104I	TTCGAA	2 cut(s)	668, 922
BspTI	CTTAAG	1 cut(s)	1274
BsrBI	CCGCTC	1 cut(s)	1233
BsrGI	TGTACA	1 cut(s)	1028
BsrI	ACTGG	1 cut(s)	259
BssECI	CCNNGG	1 cut(s)	298
BssSI	CACGAG	1 cut(s)	1220
BssT1I	CCWWGG	1 cut(s)	298
Bst2BI	CACGAG	1 cut(s)	1220
Bst4CI	ACNGT	4 cut(s)	349, 553, 975, 1087
Bst6I	CTCTTC	4 cut(s)	372, 589, 774, 1039
BstAFI	CTTAAG	1 cut(s)	1274
BstAUI	TGTACA	1 cut(s)	1028
BstBI	TTCGAA	2 cut(s)	668, 922
BstDEI	CTNAG	8 cut(s)	70, 220, 396, 426, 624, 693, 741, 1110
BstENI	CCTNNNNNAGG	1 cut(s)	268
BstF5I	GGATG	2 cut(s)	346, 436
BstFNI	CGCG	1 cut(s)	1130
BstHHI	GCGC	1 cut(s)	1132
BstMAI	GTCTC	3 cut(s)	577, 731, 850
BstMWI	GCNNNNNNNGC	1 cut(s)	1276
BstSCI	CCNGG	1 cut(s)	984
BstSFI	CTRYAG	1 cut(s)	84
BstUI	CGCG	1 cut(s)	1130
BstV1I	GCAGC	3 cut(s)	1192, 1256, 1267
BstV2I	GAAGAC	1 cut(s)	554
BstX2I	RGATCY	5 cut(s)	73, 151, 235, 620, 728
BstYI	RGATCY	5 cut(s)	73, 151, 235, 620, 728
BsuI	GTATCC	1 cut(s)	73
BtrI	CACGTC	1 cut(s)	1036
BtsCI	GGATG	2 cut(s)	346, 436
BtsI	GCAGTG	2 cut(s)	93, 954
BtsIMutI	CAGTG	2 cut(s)	93, 954
CfoI	GCGC	1 cut(s)	1132
Cfr13I	GGNCC	1 cut(s)	596
Csp6I	GTAC	2 cut(s)	252, 1029
CviAII	CATG	3 cut(s)	497, 611, 1306
CviQI	GTAC	2 cut(s)	252, 1029
DdeI	CTNAG	8 cut(s)	70, 220, 396, 426, 624, 693, 741, 1110
Eam1104I	CTCTTC	4 cut(s)	372, 589, 774, 1039
EarI	CTCTTC	4 cut(s)	372, 589, 774, 1039
Eco130I	CCWWGG	1 cut(s)	298
Eco32I	GATATC	1 cut(s)	967
Eco47I	GGWCC	1 cut(s)	596
Eco57I	CTGAAG	1 cut(s)	176
EcoNI	CCTNNNNNAGG	1 cut(s)	268
EcoO109I	RGGNCCY	1 cut(s)	596
EcoRV	GATATC	1 cut(s)	967
EcoT14I	CCWWGG	1 cut(s)	298
ErhI	CCWWGG	1 cut(s)	298
FaeI	CATG	3 cut(s)	500, 614, 1309
FaqI	GGGAC	1 cut(s)	475
FatI	CATG	3 cut(s)	496, 610, 1305
FauI	CCCGC	1 cut(s)	1226
FblI	GTMKAC	1 cut(s)	1288
Fnu4HI	GCNGC	3 cut(s)	1206, 1245, 1256
FokI	GGATG	2 cut(s)	353, 443
Fsp4HI	GCNGC	3 cut(s)	1206, 1245, 1256
FspBI	CTAG	4 cut(s)	176, 299, 489, 756
GlaI	GCGC	1 cut(s)	1131
GluI	GCNGC	3 cut(s)	1206, 1245, 1256
GsuI	CTGGAG	1 cut(s)	1149
HapII	CCGG	2 cut(s)	675, 986
HhaI	GCGC	1 cut(s)	1132
Hin1II	CATG	3 cut(s)	500, 614, 1309
Hin6I	GCGC	1 cut(s)	1130
HinP1I	GCGC	1 cut(s)	1130
HindIII	AAGCTT	2 cut(s)	925, 1277
HinfI	GANTC	5 cut(s)	646, 659, 665, 1061, 1138
HpaII	CCGG	2 cut(s)	675, 986
HphI	GGTGA	2 cut(s)	68, 1170
Hpy166II	GTNNAC	4 cut(s)	252, 1029, 1178, 1289
Hpy188I	TCNGA	7 cut(s)	156, 399, 427, 625, 664, 1111, 1300
Hpy188III	TCNNGA	7 cut(s)	77, 650, 656, 1016, 1166, 1222, 1228
Hpy8I	GTNNAC	4 cut(s)	252, 1029, 1178, 1289
HpyAV	CCTTC	4 cut(s)	41, 204, 557, 1034
HpyCH4III	ACNGT	4 cut(s)	349, 553, 975, 1087
HpyCH4IV	ACGT	2 cut(s)	421, 1035
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1276
HpyF3I	CTNAG	8 cut(s)	70, 220, 396, 426, 624, 693, 741, 1110
HpySE526I	ACGT	2 cut(s)	421, 1035
Hsp92II	CATG	3 cut(s)	500, 614, 1309
HspAI	GCGC	1 cut(s)	1130
LmnI	GCTCC	3 cut(s)	172, 944, 1168
LpnPI	CCDG	9 cut(s)	62, 240, 252, 688, 702, 891, 999, 1179, 1241
Lsp1109I	GCAGC	3 cut(s)	1192, 1256, 1267
LweI	GCATC	4 cut(s)	219, 672, 1009, 1231
MaeI	CTAG	4 cut(s)	176, 299, 489, 756
MaeII	ACGT	2 cut(s)	421, 1035
MaeIII	GTNAC	4 cut(s)	241, 302, 349, 1215
MbiI	CCGCTC	1 cut(s)	1233
MfeI	CAATTG	1 cut(s)	748
MflI	RGATCY	5 cut(s)	73, 151, 235, 620, 728
MluCI	AATT	5 cut(s)	146, 748, 956, 1114, 1157
MlyI	GAGTC	2 cut(s)	655, 1055
MmeI	TCCRAC	2 cut(s)	109, 598
MnlI	CCTC	7 cut(s)	421, 537, 619, 761, 963, 1095, 1186
MslI	CAYNNNNRTG	1 cut(s)	864
MspA1I	CMGCKG	1 cut(s)	1258
MspCI	CTTAAG	1 cut(s)	1274
MspI	CCGG	2 cut(s)	675, 986
MspR9I	CCNGG	1 cut(s)	986
MunI	CAATTG	1 cut(s)	748
MvnI	CGCG	1 cut(s)	1130
MwoI	GCNNNNNNNGC	1 cut(s)	1276
NciI	CCSGG	1 cut(s)	986
NlaIII	CATG	3 cut(s)	500, 614, 1309
NlaIV	GGNNCC	1 cut(s)	597
NmuCI	GTSAC	2 cut(s)	241, 302
NspV	TTCGAA	2 cut(s)	668, 922
PfeI	GAWTC	3 cut(s)	659, 665, 1138
PkrI	GCNGC	3 cut(s)	1207, 1246, 1257
PleI	GAGTC	2 cut(s)	654, 1055
PpsI	GAGTC	2 cut(s)	654, 1055
PpuMI	RGGWCCY	1 cut(s)	596
Psp1406I	AACGTT	1 cut(s)	421
Psp5II	RGGWCCY	1 cut(s)	596
PspN4I	GGNNCC	1 cut(s)	597
PspPI	GGNCC	1 cut(s)	596
PspPPI	RGGWCCY	1 cut(s)	596
PstI	CTGCAG	1 cut(s)	88
PsuI	RGATCY	5 cut(s)	73, 151, 235, 620, 728
RsaI	GTAC	2 cut(s)	253, 1030
RsaNI	GTAC	2 cut(s)	252, 1029
RseI	CAYNNNNRTG	1 cut(s)	864
SatI	GCNGC	3 cut(s)	1206, 1245, 1256
Sau96I	GGNCC	1 cut(s)	596
SchI	GAGTC	2 cut(s)	655, 1055
ScrFI	CCNGG	1 cut(s)	986
SfaNI	GCATC	4 cut(s)	219, 672, 1009, 1231
SfcI	CTRYAG	1 cut(s)	84
SfuI	TTCGAA	2 cut(s)	668, 922
SinI	GGWCC	1 cut(s)	596
SmiMI	CAYNNNNRTG	1 cut(s)	864
SmlI	CTYRAG	1 cut(s)	1274
SmoI	CTYRAG	1 cut(s)	1274
Sse9I	AATT	5 cut(s)	146, 748, 956, 1114, 1157
SsiI	CCGC	2 cut(s)	1233, 1258
SspMI	CTAG	4 cut(s)	176, 299, 489, 756
StyD4I	CCNGG	1 cut(s)	984
StyI	CCWWGG	1 cut(s)	298
TaaI	ACNGT	4 cut(s)	349, 553, 975, 1087
TaiI	ACGT	2 cut(s)	424, 1038
TaqI	TCGA	3 cut(s)	668, 922, 1136
TasI	AATT	5 cut(s)	146, 748, 956, 1114, 1157
TatI	WGTACW	2 cut(s)	251, 1028
TfiI	GAWTC	3 cut(s)	659, 665, 1138
TscAI	CASTG	2 cut(s)	93, 954
TseFI	GTSAC	2 cut(s)	241, 302
TseI	GCWGC	3 cut(s)	1205, 1244, 1255
Tsp45I	GTSAC	2 cut(s)	241, 302
TspDTI	ATGAA	6 cut(s)	193, 282, 359, 428, 485, 899
TspRI	CASTG	2 cut(s)	93, 954
Vha464I	CTTAAG	1 cut(s)	1274
VpaK11BI	GGWCC	1 cut(s)	596
XagI	CCTNNNNNAGG	1 cut(s)	268
XmaJI	CCTAGG	1 cut(s)	298
XmiI	GTMKAC	1 cut(s)	1288
XspI	CTAG	4 cut(s)	176, 299, 489, 756

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.