Rmu_sc0009846.1_g000001

RING-type E3 ubiquitin transferase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009846.1
Physical Location & Seq
Forward (+)
2293 .. 3642
1350 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009846.1_g000001.1.cds

Sequence Viewer

Length: 1350 bp
atgtatcagccgcctggtccgagaagggttggggatctcaagtttgatgtgggcggtggtgggcaagttctagatctggagactgctgtgaaagatgggattctgggcggcggcggcgggttagtttgcggtggcgttgcggcggagaagttggatctgaagaagatgatagaagagctggagtccattgagattccctcggtgttcatttgcccaatctcattggagccaatgcaagaccctgtgacgctttgcacgggtcagacgtatgagagatccaacattctcaaatggtttaacttggggcactatacgtgtcccacaacaatgcaggagctttgggacgactcggtcacgcccaacaagaccctgcaccagctgattcacagctggttttcgcagaagtactcggccatgaagaagaggtctgaggatgtgcaggggagggctttggaaattttggagacattgaagaaggtgaaaggccaagctagagttcaagctctcaaggagctgaggcaggtagtgacggctcactcttcggctaagaacacagtggtggacaatggaggtattgctttgatttcttctttattgggtccttttacttcgcacgccgttgggtccgaagcaattgggaccctcgtgcatttggacctcagttctgagtccaagacgagtctgatgcaacccgcaaagatttcgttaatggttgatatgttgaatgaggggtcgattgagaccaagatcaattgtacgaaattgattgatgttttgatggagggcaaggatttggagtcggaaattgcctcgagtttgagtcttgtggttggattgttgaggctagtgaaagataagaggcactcgaaaggggtgttgcctggactgagtttgttgaagacaatttgtacacacgagtcagtcaggagctcggttgtgagtgttgggacagttcctcaggtggttgagctcttgccgagcttgaatcacgagtgtttggagctagcgcttcatatcctagaagttttgtctactcttcaagaaggaagagaggctttgagatgttgcgccaagacaatcccaagtgtggttggactgttgatgaaggtttcggagacgtgtacgcagcttgcattgtcaatcttgtgggctgtttgcaagctcgccccagacgaatgtgcttccgttgcagttgaagcaggtctagcagcgaaactgcttctcgtgattcagagtggatgcaatcctacactgaagcaaagggctgctgagctcttgaagttgtgtagtctaaattactccactactacattcatttccaagtgtaagcttactagaacaatacaatga

Protein Analysis

449

Amino Acids

48.49

Weight (kDa)

6.79

Isoelectric Point (pI)

46.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 350
Acc36I ACCTGC 2 cut(s) 511, 1190
AccI GTMKAC 1 cut(s) 1031
AclWI GGATC 3 cut(s) 42, 162, 270
AcoI YGGCCR 1 cut(s) 411
AcsI RAATTY 1 cut(s) 456
AcuI CTGAAG 2 cut(s) 179, 1274
AfaI GTAC 4 cut(s) 407, 757, 910, 1123
AfeI AGCGCT 1 cut(s) 1008
AfiI CCNNNNNNNGG 1 cut(s) 1087
AflIII ACRYGT 2 cut(s) 314, 1118
AgsI TTSAA 8 cut(s) 472, 500, 724, 898, 985, 1040, 1196, 1279
AjiI CACGTC 1 cut(s) 1119
AjnI CCWGG 2 cut(s) 13, 880
AjuI GAANNNNNNNTTGG 2 cut(s) 480, 512
AleI CACNNNNGTG 1 cut(s) 557
Alw21I GWGCWC 3 cut(s) 932, 972, 1275
Alw26I GTCTC 4 cut(s) 74, 458, 734, 1109
AlwI GGATC 3 cut(s) 42, 162, 270
Ama87I CYCGRG 1 cut(s) 811
Aor51HI AGCGCT 1 cut(s) 1008
AoxI GGCC 2 cut(s) 411, 484
ApeKI GCWGC 3 cut(s) 1126, 1208, 1265
ApoI RAATTY 1 cut(s) 456
AspLEI GCGC 2 cut(s) 1009, 1070
AspS9I GGNCC 5 cut(s) 17, 599, 624, 639, 655
AsuHPI GGTGA 1 cut(s) 490
AsuNHI GCTAGC 1 cut(s) 1003
AvaI CYCGRG 1 cut(s) 811
AvaII GGWCC 5 cut(s) 17, 599, 624, 639, 655
AxyI CCTNAGG 1 cut(s) 957
BaeGI GKGCMC 1 cut(s) 309
BanII GRGCYC 3 cut(s) 932, 972, 1275
BauI CACGAG 4 cut(s) 644, 914, 989, 1223
BbsI GAAGAC 1 cut(s) 905
Bbv12I GWGCWC 3 cut(s) 932, 972, 1275
BbvCI CCTCAGC 1 cut(s) 515
BbvI GCAGC 3 cut(s) 1138, 1220, 1252
BccI CCATC 2 cut(s) 89, 772
BceAI ACGGC 2 cut(s) 546, 602
BcgI CGANNNNNNTGC 4 cut(s) 667, 684, 701, 718
BciT130I CCWGG 2 cut(s) 15, 882
BcoDI GTCTC 4 cut(s) 74, 458, 734, 1109
BfaI CTAG 7 cut(s) 71, 492, 845, 1004, 1019, 1205, 1335
BfoI RGCGCY 1 cut(s) 1010
BfuAI ACCTGC 2 cut(s) 511, 1190
BglII AGATCT 1 cut(s) 73
BisI GCNGC 8 cut(s) 11, 109, 112, 115, 141, 1127, 1209, 1266
BlpI GCTNAGC 1 cut(s) 1269
BlsI GCNGC 8 cut(s) 12, 110, 113, 116, 142, 1128, 1210, 1267
BmcAI AGTACT 1 cut(s) 407
Bme1390I CCNGG 2 cut(s) 15, 882
Bme18I GGWCC 5 cut(s) 17, 599, 624, 639, 655
BmeT110I CYCGRG 1 cut(s) 811
BmgBI CACGTC 1 cut(s) 1119
BmgT120I GGNCC 5 cut(s) 17, 599, 624, 639, 655
BmiI GGNNCC 5 cut(s) 228, 600, 625, 640, 641
BmrFI CCNGG 2 cut(s) 15, 882
BmsI GCATC 2 cut(s) 675, 1229
BmtI GCTAGC 1 cut(s) 1007
BpiI GAAGAC 1 cut(s) 905
BplI GAGNNNNNCTC 2 cut(s) 182, 214
BpmI CTGGAG 2 cut(s) 98, 200
Bpu10I CCTNAGC 1 cut(s) 515
Bpu1102I GCTNAGC 1 cut(s) 1269
BpuEI CTTGAG 2 cut(s) 23, 491
BsaAI YACGTR 1 cut(s) 315
BsaI GGTCTC 1 cut(s) 734
BsaJI CCNNGG 1 cut(s) 198
Bsc4I CCNNNNNNNGG 1 cut(s) 1087
Bse21I CCTNAGG 1 cut(s) 957
BseBI CCWGG 2 cut(s) 15, 882
BseDI CCNNGG 1 cut(s) 198
BseGI GGATG 2 cut(s) 439, 1244
BseLI CCNNNNNNNGG 1 cut(s) 1087
BseMII CTCAG 7 cut(s) 420, 506, 657, 673, 878, 971, 1260
BseSI GKGCMC 1 cut(s) 309
BseXI GCAGC 3 cut(s) 1138, 1220, 1252
BsgI GTGCAG 2 cut(s) 356, 458
BshFI GGCC 2 cut(s) 413, 486
BsiHKAI GWGCWC 3 cut(s) 932, 972, 1275
BsiHKCI CYCGRG 1 cut(s) 811
BslFI GGGAC 4 cut(s) 303, 356, 652, 961
BslI CCNNNNNNNGG 1 cut(s) 1087
BsmAI GTCTC 4 cut(s) 74, 458, 734, 1109
BsmBI CGTCTC 1 cut(s) 1109
BsmFI GGGAC 4 cut(s) 303, 356, 652, 961
BsnI GGCC 2 cut(s) 413, 486
Bso31I GGTCTC 1 cut(s) 734
BsoBI CYCGRG 1 cut(s) 811
Bsp1286I GDGCHC 4 cut(s) 309, 932, 972, 1275
Bsp1407I TGTACA 1 cut(s) 908
Bsp143I GATC 5 cut(s) 34, 73, 154, 275, 747
Bsp1720I GCTNAGC 1 cut(s) 1269
BspANI GGCC 2 cut(s) 413, 486
BspCNI CTCAG 7 cut(s) 421, 507, 658, 672, 879, 970, 1261
BspLI GGNNCC 5 cut(s) 228, 600, 625, 640, 641
BspMI ACCTGC 2 cut(s) 511, 1190
BspOI GCTAGC 1 cut(s) 1007
BspPI GGATC 3 cut(s) 42, 162, 270
BspQI GCTCTTC 1 cut(s) 168
BspTNI GGTCTC 1 cut(s) 734
BsrGI TGTACA 1 cut(s) 908
BssECI CCNNGG 1 cut(s) 198
BssMI GATC 5 cut(s) 34, 73, 154, 275, 747
BssSI CACGAG 4 cut(s) 644, 914, 989, 1223
Bst2BI CACGAG 4 cut(s) 644, 914, 989, 1223
Bst2UI CCWGG 2 cut(s) 15, 882
Bst4CI ACNGT 3 cut(s) 556, 952, 1098
Bst6I CTCTTC 5 cut(s) 168, 416, 544, 1041, 1042
BstAUI TGTACA 1 cut(s) 908
BstBAI YACGTR 1 cut(s) 315
BstC8I GCNNGC 5 cut(s) 615, 1005, 1131, 1160, 1164
BstDEI CTNAG 8 cut(s) 429, 515, 546, 659, 666, 887, 957, 1269
BstF5I GGATG 2 cut(s) 439, 1244
BstH2I RGCGCY 1 cut(s) 1010
BstHHI GCGC 2 cut(s) 1009, 1070
BstKTI GATC 5 cut(s) 37, 76, 157, 278, 750
BstMAI GTCTC 4 cut(s) 74, 458, 734, 1109
BstMBI GATC 5 cut(s) 34, 73, 154, 275, 747
BstMWI GCNNNNNNNGC 4 cut(s) 114, 1187, 1196, 1205
BstNI CCWGG 2 cut(s) 15, 882
BstSCI CCNGG 2 cut(s) 13, 880
BstSLI GKGCMC 1 cut(s) 309
BstV1I GCAGC 3 cut(s) 1138, 1220, 1252
BstV2I GAAGAC 1 cut(s) 905
BstX2I RGATCY 4 cut(s) 34, 73, 154, 275
BstYI RGATCY 4 cut(s) 34, 73, 154, 275
Bsu36I CCTNAGG 1 cut(s) 957
BsuRI GGCC 2 cut(s) 413, 486
BtrI CACGTC 1 cut(s) 1119
BtsCI GGATG 2 cut(s) 439, 1244
BtsIMutI CAGTG 2 cut(s) 561, 1250
BveI ACCTGC 2 cut(s) 511, 1190
Cac8I GCNNGC 5 cut(s) 615, 1005, 1131, 1160, 1164
CfoI GCGC 2 cut(s) 1009, 1070
Cfr13I GGNCC 5 cut(s) 17, 599, 624, 639, 655
CseI GACGC 1 cut(s) 256
Csp6I GTAC 4 cut(s) 406, 756, 909, 1122
CviAII CATG 1 cut(s) 415
CviQI GTAC 4 cut(s) 406, 756, 909, 1122
DdeI CTNAG 8 cut(s) 429, 515, 546, 659, 666, 887, 957, 1269
DpnI GATC 5 cut(s) 36, 75, 156, 277, 749
DpnII GATC 5 cut(s) 34, 73, 154, 275, 747
DrdI GACNNNNNNGTC 1 cut(s) 350
DseDI GACNNNNNNGTC 1 cut(s) 350
EaeI YGGCCR 1 cut(s) 411
Eam1104I CTCTTC 5 cut(s) 168, 416, 544, 1041, 1042
EarI CTCTTC 5 cut(s) 168, 416, 544, 1041, 1042
EciI GGCGGA 1 cut(s) 158
Ecl136II GAGCTC 3 cut(s) 930, 970, 1273
Eco24I GRGCYC 3 cut(s) 932, 972, 1275
Eco31I GGTCTC 1 cut(s) 734
Eco47I GGWCC 5 cut(s) 17, 599, 624, 639, 655
Eco47III AGCGCT 1 cut(s) 1008
Eco53kI GAGCTC 3 cut(s) 930, 970, 1273
Eco57I CTGAAG 2 cut(s) 179, 1274
Eco81I CCTNAGG 1 cut(s) 957
Eco88I CYCGRG 1 cut(s) 811
EcoICRI GAGCTC 3 cut(s) 930, 970, 1273
EcoO109I RGGNCCY 2 cut(s) 599, 639
EcoRII CCWGG 2 cut(s) 13, 880
EcoT38I GRGCYC 3 cut(s) 932, 972, 1275
Esp3I CGTCTC 1 cut(s) 1109
FaeI CATG 1 cut(s) 418
FaiI YATR 5 cut(s) 270, 312, 416, 719, 1014
FalI AAGNNNNNCTT 2 cut(s) 1039, 1071
FaqI GGGAC 4 cut(s) 303, 356, 652, 961
FatI CATG 1 cut(s) 414
FauI CCCGC 2 cut(s) 110, 700
FblI GTMKAC 1 cut(s) 1031
Fnu4HI GCNGC 8 cut(s) 11, 109, 112, 115, 141, 1127, 1209, 1266
FokI GGATG 2 cut(s) 446, 1251
FriOI GRGCYC 3 cut(s) 932, 972, 1275
Fsp4HI GCNGC 8 cut(s) 11, 109, 112, 115, 141, 1127, 1209, 1266
FspBI CTAG 7 cut(s) 71, 492, 845, 1004, 1019, 1205, 1335
GlaI GCGC 2 cut(s) 1008, 1069
GluI GCNGC 8 cut(s) 11, 109, 112, 115, 141, 1127, 1209, 1266
GsuI CTGGAG 2 cut(s) 98, 200
HaeII RGCGCY 1 cut(s) 1010
HaeIII GGCC 2 cut(s) 413, 486
HgaI GACGC 1 cut(s) 256
HhaI GCGC 2 cut(s) 1009, 1070
Hin1II CATG 1 cut(s) 418
Hin6I GCGC 2 cut(s) 1007, 1068
HinP1I GCGC 2 cut(s) 1007, 1068
HindIII AAGCTT 1 cut(s) 1328
HphI GGTGA 1 cut(s) 490
Hpy166II GTNNAC 4 cut(s) 562, 911, 1032, 1122
Hpy188III TCNNGA 7 cut(s) 71, 77, 925, 989, 1040, 1225, 1276
Hpy8I GTNNAC 4 cut(s) 562, 911, 1032, 1122
HpyAV CCTTC 4 cut(s) 18, 469, 1037, 1099
HpyCH4III ACNGT 3 cut(s) 556, 952, 1098
HpyCH4IV ACGT 3 cut(s) 266, 314, 1118
HpyF10VI GCNNNNNNNGC 4 cut(s) 114, 1187, 1196, 1205
HpyF3I CTNAG 8 cut(s) 429, 515, 546, 659, 666, 887, 957, 1269
HpySE526I ACGT 3 cut(s) 266, 314, 1118
Hsp92II CATG 1 cut(s) 418
HspAI GCGC 2 cut(s) 1007, 1068
KflI GGGWCCC 1 cut(s) 639
Kzo9I GATC 5 cut(s) 34, 73, 154, 275, 747
LguI GCTCTTC 1 cut(s) 168
LmnI GCTCC 5 cut(s) 226, 334, 511, 927, 1000
Lsp1109I GCAGC 3 cut(s) 1138, 1220, 1252
LweI GCATC 2 cut(s) 675, 1229
MaeI CTAG 7 cut(s) 71, 492, 845, 1004, 1019, 1205, 1335
MaeII ACGT 3 cut(s) 266, 314, 1118
MaeIII GTNAC 3 cut(s) 244, 352, 526
MalI GATC 5 cut(s) 36, 75, 156, 277, 749
MboI GATC 5 cut(s) 34, 73, 154, 275, 747
MfeI CAATTG 2 cut(s) 633, 751
MflI RGATCY 4 cut(s) 34, 73, 154, 275
MhlI GDGCHC 4 cut(s) 309, 932, 972, 1275
MluCI AATT 7 cut(s) 456, 633, 751, 761, 804, 903, 1294
MlyI GAGTC 7 cut(s) 191, 341, 677, 688, 806, 829, 926
MmeI TCCRAC 5 cut(s) 132, 303, 780, 811, 1072
MseI TTAA 2 cut(s) 297, 707
MslI CAYNNNNRTG 2 cut(s) 326, 557
MspA1I CMGCKG 2 cut(s) 379, 390
MspR9I CCNGG 2 cut(s) 15, 882
MunI CAATTG 2 cut(s) 633, 751
MvaI CCWGG 2 cut(s) 15, 882
MwoI GCNNNNNNNGC 4 cut(s) 114, 1187, 1196, 1205
NdeII GATC 5 cut(s) 34, 73, 154, 275, 747
NheI GCTAGC 1 cut(s) 1003
NlaIII CATG 1 cut(s) 418
NlaIV GGNNCC 5 cut(s) 228, 600, 625, 640, 641
NmeAIII GCCGAG 2 cut(s) 389, 1002
NmuCI GTSAC 3 cut(s) 244, 352, 526
OliI CACNNNNGTG 1 cut(s) 557
PaeR7I CTCGAG 1 cut(s) 811
PciSI GCTCTTC 1 cut(s) 168
PcsI WCGNNNNNNNCGW 2 cut(s) 263, 1170
PfeI GAWTC 5 cut(s) 100, 193, 382, 985, 1228
PflFI GACNNNGTC 1 cut(s) 350
PkrI GCNGC 8 cut(s) 12, 110, 113, 116, 142, 1128, 1210, 1267
PleI GAGTC 7 cut(s) 190, 341, 676, 687, 805, 828, 925
PpsI GAGTC 7 cut(s) 190, 341, 676, 687, 805, 828, 925
Ppu21I YACGTR 1 cut(s) 315
PpuMI RGGWCCY 2 cut(s) 599, 639
Psp124BI GAGCTC 3 cut(s) 932, 972, 1275
Psp5II RGGWCCY 2 cut(s) 599, 639
Psp6I CCWGG 2 cut(s) 13, 880
PspGI CCWGG 2 cut(s) 13, 880
PspN4I GGNNCC 5 cut(s) 228, 600, 625, 640, 641
PspPI GGNCC 5 cut(s) 17, 599, 624, 639, 655
PspPPI RGGWCCY 2 cut(s) 599, 639
PspXI VCTCGAGB 1 cut(s) 811
PsuI RGATCY 4 cut(s) 34, 73, 154, 275
PsyI GACNNNGTC 1 cut(s) 350
PvuII CAGCTG 2 cut(s) 379, 390
RsaI GTAC 4 cut(s) 407, 757, 910, 1123
RsaNI GTAC 4 cut(s) 406, 756, 909, 1122
RseI CAYNNNNRTG 2 cut(s) 326, 557
SacI GAGCTC 3 cut(s) 932, 972, 1275
SapI GCTCTTC 1 cut(s) 168
SaqAI TTAA 2 cut(s) 297, 707
SatI GCNGC 8 cut(s) 11, 109, 112, 115, 141, 1127, 1209, 1266
Sau3AI GATC 5 cut(s) 34, 73, 154, 275, 747
Sau96I GGNCC 5 cut(s) 17, 599, 624, 639, 655
ScaI AGTACT 1 cut(s) 407
SchI GAGTC 7 cut(s) 191, 341, 677, 688, 806, 829, 926
ScrFI CCNGG 2 cut(s) 15, 882
SduI GDGCHC 4 cut(s) 309, 932, 972, 1275
SfaNI GCATC 2 cut(s) 675, 1229
Sfr274I CTCGAG 1 cut(s) 811
SinI GGWCC 5 cut(s) 17, 599, 624, 639, 655
SlaI CTCGAG 1 cut(s) 811
SmiMI CAYNNNNRTG 2 cut(s) 326, 557
SmlI CTYRAG 3 cut(s) 38, 506, 811
SmoI CTYRAG 3 cut(s) 38, 506, 811
Sse9I AATT 7 cut(s) 456, 633, 751, 761, 804, 903, 1294
SspMI CTAG 7 cut(s) 71, 492, 845, 1004, 1019, 1205, 1335
SstI GAGCTC 3 cut(s) 932, 972, 1275
StyD4I CCNGG 2 cut(s) 13, 880
TaaI ACNGT 3 cut(s) 556, 952, 1098
TaiI ACGT 3 cut(s) 269, 317, 1121
TaqI TCGA 3 cut(s) 734, 812, 866
TaqII GACCGA 1 cut(s) 340
TasI AATT 7 cut(s) 456, 633, 751, 761, 804, 903, 1294
TatI WGTACW 2 cut(s) 405, 908
TauI GCSGC 5 cut(s) 13, 111, 114, 117, 143
TfiI GAWTC 5 cut(s) 100, 193, 382, 985, 1228
Tru1I TTAA 2 cut(s) 297, 707
Tru9I TTAA 2 cut(s) 297, 707
TscAI CASTG 2 cut(s) 561, 1257
TseFI GTSAC 3 cut(s) 244, 352, 526
TseI GCWGC 3 cut(s) 1126, 1208, 1265
Tsp45I GTSAC 3 cut(s) 244, 352, 526
TspDTI ATGAA 5 cut(s) 196, 431, 1001, 1118, 1303
TspGWI ACGGA 1 cut(s) 1174
TspRI CASTG 2 cut(s) 561, 1257
Tth111I GACNNNGTC 1 cut(s) 350
VpaK11BI GGWCC 5 cut(s) 17, 599, 624, 639, 655
XapI RAATTY 1 cut(s) 456
XbaI TCTAGA 1 cut(s) 70
XhoI CTCGAG 1 cut(s) 811
XmiI GTMKAC 1 cut(s) 1031
XspI CTAG 7 cut(s) 71, 492, 845, 1004, 1019, 1205, 1335
ZrmI AGTACT 1 cut(s) 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.