Rw2G016190

RING-type E3 ubiquitin transferase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Forward (+)
18996710 .. 18999248
2539 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G016190.1

Sequence Viewer

Length: 1362 bp
ATGCCTATGTTTCAGCCCTCAAAGAGGGATGGGGTTGTTGGGTTTGATGGTGGAGGAGATGGGCATGTTCTAGATCTGGACACAGCTGTGAAAGATGGGGTTTTGGGTGGTGGTGGTGGTGTTGATGTTGGTGGGGTTGTGGCAACTGGTGTTGGTGAGAAATTGGATCTGAGTAAGATGATTGAGGAGCTTGACTTGTCTGAGGTCCCTTCTGTGTTTATTTGCCCAATTTCTCTTGAGCCAATGCAAGACCCTGTGACCCTTTGCACTGGGCAAACCTATGAGAAGTCCAACATTCTCAAGTGGTTCAATTTGGGGCACCTCACCTGTCCAACCACAATGCAGGAGCTTTGGGATGATTCCGTGACCCCGAATAGGACCCTTTACCATCTAATCTACACCTGGTTTTCGCAGAAGTATCTGCTCATGAAGAAGAAGTCAGAAGATGTTCAGGGAAGGGCTGCAGAGCTTGTGGAGACGCTGAAGAAGGTGAAGGGTCAAGCTAGGGTGCAAGCGCTCAAGGAGTTGCATCAAGTTGTGGGGGCTCATGCCACTGCTAGGAAGACATTGATTGATAAAGGTGGGATTGCTGTAGTTTCGTCTCTATTAGGTCCATTTACTTCACATGTTGTAGGTTCGATAGCCATTGCAATTCTTGTGAATTTGTCACTTGATTCGGAGTCCAGAATGAATTTGATGCAACCGGCAAAGATTTCTTTGATGGTGGACATTTTGAACGAGGGGTCAATTGAGACGAAAATCAATTGTACCCGGTTGATCAAAATGTTAATGGAGGAGAAGGATTTTCGATCAGAAATTGTTTCGAGCCATAGCCTCCTGGTTGGAATAATGAGGCTGGTTAAAGATACGAGACATAAAGTTGGAGTCTTGCCAGGACTGAGCCTCCTCAGAACAATATGCTTGCATGAGGAAGCGAGGGGCTTGATAGTGAGCATTGGAGCTGTACCGCAATTGGTTGAATGTTTGCCTTCTCTTGACCACGAATGTTTAGAATTGGCCCTTTTTGTATTGGATGCATTGTCATCTCTACCACAGGGAGTATTAGCGTTGAAGGATTGTTCGAAGACTATACCGAATATGGTGAGGGTTCTGATGAGAATTTCAGAGAGTTGTACTCAATATGCGTTGTCAATCTTATCATCTATATGCAAACTTGCCCCTGAGGAATGTTCATCAATTGCCTTGGATGCCGGTCTAGCGGCAAAGCTCCTCCTCGTGATCCAGAGTTGTAGTGATCCTGTCTTGAAGCAGCAATCCTCAGAGCTGTTGAAGCTGTGTAGTCTAAACTATTCTGATACAATATTCATTTCCAAGTGCAAGCTTACAAGGACAATTCAATGA

Protein Analysis

453

Amino Acids

49.2

Weight (kDa)

6.1

Isoelectric Point (pI)

43.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
U-box PF04564 69 - 139 1.1e-13 U-box domain
ARM_PUB PF25598 157 - 453 3.1e-81 Plant U-box protein ARM repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 318
AciI CCGC 2 cut(s) 968, 1220
AclWI GGATC 3 cut(s) 174, 1234, 1250
AcsI RAATTY 3 cut(s) 661, 691, 1119
AcuI CTGAAG 1 cut(s) 503
AfaI GTAC 3 cut(s) 769, 966, 1135
AfeI AGCGCT 1 cut(s) 516
AfiI CCNNNNNNNGG 3 cut(s) 24, 375, 558
AflIII ACRYGT 1 cut(s) 625
AgsI TTSAA 7 cut(s) 310, 736, 980, 1072, 1267, 1291, 1358
AjnI CCWGG 3 cut(s) 401, 837, 892
AleI CACNNNNGTG 1 cut(s) 86
Alw26I GTCTC 4 cut(s) 470, 606, 746, 865
AlwI GGATC 3 cut(s) 174, 1234, 1250
Aor51HI AGCGCT 1 cut(s) 516
AoxI GGCC 1 cut(s) 1017
ApeKI GCWGC 2 cut(s) 461, 1270
ApoI RAATTY 3 cut(s) 661, 691, 1119
Asp700I GAANNNNTTC 1 cut(s) 447
AspLEI GCGC 1 cut(s) 517
AspS9I GGNCC 4 cut(s) 205, 378, 611, 1018
AsuC2I CCSGG 1 cut(s) 772
AsuHPI GGTGA 4 cut(s) 167, 316, 502, 1114
AsuII TTCGAA 1 cut(s) 1082
AvaII GGWCC 3 cut(s) 205, 378, 611
AxyI CCTNAGG 1 cut(s) 1182
BaeGI GKGCMC 1 cut(s) 321
BanI GGYRCC 1 cut(s) 318
BanII GRGCYC 1 cut(s) 547
BauI CACGAG 1 cut(s) 1235
BbsI GAAGAC 2 cut(s) 569, 1091
BbvI GCAGC 2 cut(s) 448, 1282
BccI CCATC 6 cut(s) 23, 41, 53, 89, 396, 715
BciT130I CCWGG 3 cut(s) 403, 839, 894
BclI TGATCA 1 cut(s) 777
BcnI CCSGG 1 cut(s) 772
BcoDI GTCTC 4 cut(s) 470, 606, 746, 865
BfaI CTAG 4 cut(s) 71, 504, 558, 1217
BfmI CTRYAG 2 cut(s) 462, 591
BfoI RGCGCY 1 cut(s) 518
BglII AGATCT 1 cut(s) 73
BisI GCNGC 3 cut(s) 462, 1221, 1271
BlsI GCNGC 3 cut(s) 463, 1222, 1272
Bme1390I CCNGG 4 cut(s) 403, 772, 839, 894
Bme18I GGWCC 3 cut(s) 205, 378, 611
BmgT120I GGNCC 4 cut(s) 205, 378, 611, 1018
BmiI GGNNCC 3 cut(s) 207, 320, 380
BmrFI CCNGG 4 cut(s) 403, 772, 839, 894
BmrI ACTGGG 1 cut(s) 279
BmsI GCATC 4 cut(s) 538, 687, 1024, 1198
BmuI ACTGGG 1 cut(s) 279
BpiI GAAGAC 2 cut(s) 569, 1091
BplI GAGNNNNNCTC 2 cut(s) 1120, 1152
Bpu14I TTCGAA 1 cut(s) 1082
BpuEI CTTGAG 3 cut(s) 257, 284, 503
BpuMI CCSGG 1 cut(s) 772
BsaJI CCNNGG 1 cut(s) 1203
BsaXI ACNNNNNCTCC 2 cut(s) 888, 918
Bsc4I CCNNNNNNNGG 3 cut(s) 24, 375, 558
Bse118I RCCGGY 2 cut(s) 703, 1211
Bse1I ACTGG 2 cut(s) 151, 274
Bse21I CCTNAGG 1 cut(s) 1182
Bse3DI GCAATG 1 cut(s) 645
BseBI CCWGG 3 cut(s) 403, 839, 894
BseDI CCNNGG 1 cut(s) 1203
BseGI GGATG 4 cut(s) 34, 361, 1039, 1213
BseLI CCNNNNNNNGG 3 cut(s) 24, 375, 558
BseMI GCAATG 1 cut(s) 645
BseMII CTCAG 6 cut(s) 161, 192, 890, 922, 1173, 1293
BseNI ACTGG 2 cut(s) 151, 274
BseRI GAGGAG 6 cut(s) 69, 200, 809, 896, 1220, 1223
BseSI GKGCMC 1 cut(s) 321
BseXI GCAGC 2 cut(s) 448, 1282
BshFI GGCC 1 cut(s) 1019
BshNI GGYRCC 1 cut(s) 318
BsiSI CCGG 3 cut(s) 704, 772, 1212
BslFI GGGAC 1 cut(s) 191
BslI CCNNNNNNNGG 3 cut(s) 24, 375, 558
BsmAI GTCTC 4 cut(s) 470, 606, 746, 865
BsmBI CGTCTC 3 cut(s) 470, 606, 746
BsmFI GGGAC 1 cut(s) 191
BsnI GGCC 1 cut(s) 1019
Bsp119I TTCGAA 1 cut(s) 1082
Bsp1286I GDGCHC 2 cut(s) 321, 547
Bsp143I GATC 6 cut(s) 73, 166, 777, 809, 1239, 1255
BspACI CCGC 2 cut(s) 968, 1220
BspANI GGCC 1 cut(s) 1019
BspCNI CTCAG 6 cut(s) 162, 193, 891, 921, 1174, 1292
BspHI TCATGA 1 cut(s) 426
BspLI GGNNCC 3 cut(s) 207, 320, 380
BspMAI CTGCAG 1 cut(s) 466
BspPI GGATC 3 cut(s) 174, 1234, 1250
BspT104I TTCGAA 1 cut(s) 1082
BspT107I GGYRCC 1 cut(s) 318
BsrDI GCAATG 1 cut(s) 645
BsrFI RCCGGY 2 cut(s) 703, 1211
BsrI ACTGG 2 cut(s) 151, 274
BssAI RCCGGY 2 cut(s) 703, 1211
BssECI CCNNGG 1 cut(s) 1203
BssMI GATC 6 cut(s) 73, 166, 777, 809, 1239, 1255
BssSI CACGAG 1 cut(s) 1235
BssT1I CCWWGG 1 cut(s) 1203
Bst2BI CACGAG 1 cut(s) 1235
Bst2UI CCWGG 3 cut(s) 403, 839, 894
BstBI TTCGAA 1 cut(s) 1082
BstC8I GCNNGC 3 cut(s) 513, 923, 1340
BstDEI CTNAG 6 cut(s) 170, 201, 899, 908, 1182, 1279
BstENI CCTNNNNNAGG 1 cut(s) 22
BstF5I GGATG 4 cut(s) 34, 361, 1039, 1213
BstH2I RGCGCY 1 cut(s) 518
BstHHI GCGC 1 cut(s) 517
BstKTI GATC 6 cut(s) 76, 169, 780, 812, 1242, 1258
BstMAI GTCTC 4 cut(s) 470, 606, 746, 865
BstMBI GATC 6 cut(s) 73, 166, 777, 809, 1239, 1255
BstMWI GCNNNNNNNGC 3 cut(s) 1208, 1217, 1291
BstNI CCWGG 3 cut(s) 403, 839, 894
BstNSI RCATGY 2 cut(s) 68, 629
BstSCI CCNGG 4 cut(s) 401, 770, 837, 892
BstSFI CTRYAG 2 cut(s) 462, 591
BstSLI GKGCMC 1 cut(s) 321
BstV1I GCAGC 2 cut(s) 448, 1282
BstV2I GAAGAC 2 cut(s) 569, 1091
BstX2I RGATCY 2 cut(s) 73, 166
BstYI RGATCY 2 cut(s) 73, 166
Bsu36I CCTNAGG 1 cut(s) 1182
BsuRI GGCC 1 cut(s) 1019
BtsCI GGATG 4 cut(s) 34, 361, 1039, 1213
BtsI GCAGTG 1 cut(s) 552
BtsIMutI CAGTG 2 cut(s) 267, 552
Cac8I GCNNGC 3 cut(s) 513, 923, 1340
CciI TCATGA 1 cut(s) 426
CfoI GCGC 1 cut(s) 517
Cfr10I RCCGGY 2 cut(s) 703, 1211
Cfr13I GGNCC 4 cut(s) 205, 378, 611, 1018
CseI GACGC 1 cut(s) 487
CsiI ACCWGGT 1 cut(s) 401
Csp6I GTAC 3 cut(s) 768, 965, 1134
CviAII CATG 5 cut(s) 65, 427, 548, 626, 926
CviQI GTAC 3 cut(s) 768, 965, 1134
DdeI CTNAG 6 cut(s) 170, 201, 899, 908, 1182, 1279
DpnI GATC 6 cut(s) 75, 168, 779, 811, 1241, 1257
DpnII GATC 6 cut(s) 73, 166, 777, 809, 1239, 1255
Eco130I CCWWGG 1 cut(s) 1203
Eco24I GRGCYC 1 cut(s) 547
Eco47I GGWCC 3 cut(s) 205, 378, 611
Eco47III AGCGCT 1 cut(s) 516
Eco57I CTGAAG 1 cut(s) 503
Eco81I CCTNAGG 1 cut(s) 1182
EcoNI CCTNNNNNAGG 1 cut(s) 22
EcoO109I RGGNCCY 2 cut(s) 205, 378
EcoRII CCWGG 3 cut(s) 401, 837, 892
EcoT14I CCWWGG 1 cut(s) 1203
EcoT22I ATGCAT 1 cut(s) 1039
EcoT38I GRGCYC 1 cut(s) 547
ErhI CCWWGG 1 cut(s) 1203
Esp3I CGTCTC 3 cut(s) 470, 606, 746
FaeI CATG 5 cut(s) 68, 430, 551, 629, 929
FaqI GGGAC 1 cut(s) 191
FatI CATG 5 cut(s) 64, 426, 547, 625, 925
FbaI TGATCA 1 cut(s) 777
Fnu4HI GCNGC 3 cut(s) 462, 1221, 1271
FokI GGATG 4 cut(s) 41, 368, 1046, 1220
FriOI GRGCYC 1 cut(s) 547
Fsp4HI GCNGC 3 cut(s) 462, 1221, 1271
FspBI CTAG 4 cut(s) 71, 504, 558, 1217
GlaI GCGC 1 cut(s) 516
GluI GCNGC 3 cut(s) 462, 1221, 1271
HaeII RGCGCY 1 cut(s) 518
HaeIII GGCC 1 cut(s) 1019
HapII CCGG 3 cut(s) 704, 772, 1212
HgaI GACGC 1 cut(s) 487
HhaI GCGC 1 cut(s) 517
Hin1II CATG 5 cut(s) 68, 430, 551, 629, 929
Hin6I GCGC 1 cut(s) 515
HinP1I GCGC 1 cut(s) 515
HindIII AAGCTT 1 cut(s) 1340
HinfI GANTC 4 cut(s) 359, 674, 680, 885
HpaII CCGG 3 cut(s) 704, 772, 1212
HphI GGTGA 4 cut(s) 167, 316, 502, 1114
Hpy166II GTNNAC 1 cut(s) 727
Hpy188III TCNNGA 9 cut(s) 71, 77, 236, 427, 684, 995, 1237, 1243, 1264
Hpy8I GTNNAC 1 cut(s) 727
HpyAV CCTTC 7 cut(s) 219, 450, 481, 487, 793, 999, 1066
HpyF10VI GCNNNNNNNGC 3 cut(s) 1208, 1217, 1291
HpyF3I CTNAG 6 cut(s) 170, 201, 899, 908, 1182, 1279
Hsp92II CATG 5 cut(s) 68, 430, 551, 629, 929
HspAI GCGC 1 cut(s) 515
Ksp22I TGATCA 1 cut(s) 777
Kzo9I GATC 6 cut(s) 73, 166, 777, 809, 1239, 1255
LmnI GCTCC 4 cut(s) 187, 346, 959, 1233
Lsp1109I GCAGC 2 cut(s) 448, 1282
LweI GCATC 4 cut(s) 538, 687, 1024, 1198
MabI ACCWGGT 1 cut(s) 401
MaeI CTAG 4 cut(s) 71, 504, 558, 1217
MaeIII GTNAC 3 cut(s) 256, 364, 666
MalI GATC 6 cut(s) 75, 168, 779, 811, 1241, 1257
MboI GATC 6 cut(s) 73, 166, 777, 809, 1239, 1255
MboII GAAGA 6 cut(s) 442, 445, 455, 496, 574, 1096
MfeI CAATTG 4 cut(s) 747, 763, 971, 1197
MflI RGATCY 2 cut(s) 73, 166
MhlI GDGCHC 2 cut(s) 321, 547
MlyI GAGTC 2 cut(s) 689, 894
MmeI TCCRAC 4 cut(s) 315, 356, 823, 862
Mph1103I ATGCAT 1 cut(s) 1039
MroXI GAANNNNTTC 1 cut(s) 447
MseI TTAA 2 cut(s) 788, 861
MslI CAYNNNNRTG 2 cut(s) 86, 1165
MspA1I CMGCKG 1 cut(s) 86
MspI CCGG 3 cut(s) 704, 772, 1212
MspR9I CCNGG 4 cut(s) 403, 772, 839, 894
MunI CAATTG 4 cut(s) 747, 763, 971, 1197
MvaI CCWGG 3 cut(s) 403, 839, 894
MwoI GCNNNNNNNGC 3 cut(s) 1208, 1217, 1291
NciI CCSGG 1 cut(s) 772
NdeII GATC 6 cut(s) 73, 166, 777, 809, 1239, 1255
NlaIII CATG 5 cut(s) 68, 430, 551, 629, 929
NlaIV GGNNCC 3 cut(s) 207, 320, 380
NmuCI GTSAC 3 cut(s) 256, 364, 666
NsiI ATGCAT 1 cut(s) 1039
NspI RCATGY 2 cut(s) 68, 629
NspV TTCGAA 1 cut(s) 1082
OliI CACNNNNGTG 1 cut(s) 86
PagI TCATGA 1 cut(s) 426
PciI ACATGT 1 cut(s) 625
PdmI GAANNNNTTC 1 cut(s) 447
PfeI GAWTC 2 cut(s) 359, 674
PkrI GCNGC 3 cut(s) 463, 1222, 1272
PleI GAGTC 2 cut(s) 688, 893
PpsI GAGTC 2 cut(s) 688, 893
PpuMI RGGWCCY 2 cut(s) 205, 378
PscI ACATGT 1 cut(s) 625
Psp5II RGGWCCY 2 cut(s) 205, 378
Psp6I CCWGG 3 cut(s) 401, 837, 892
PspGI CCWGG 3 cut(s) 401, 837, 892
PspN4I GGNNCC 3 cut(s) 207, 320, 380
PspPI GGNCC 4 cut(s) 205, 378, 611, 1018
PspPPI RGGWCCY 2 cut(s) 205, 378
PstI CTGCAG 1 cut(s) 466
PsuI RGATCY 2 cut(s) 73, 166
PvuII CAGCTG 1 cut(s) 86
RsaI GTAC 3 cut(s) 769, 966, 1135
RsaNI GTAC 3 cut(s) 768, 965, 1134
RseI CAYNNNNRTG 2 cut(s) 86, 1165
SaqAI TTAA 2 cut(s) 788, 861
SatI GCNGC 3 cut(s) 462, 1221, 1271
Sau3AI GATC 6 cut(s) 73, 166, 777, 809, 1239, 1255
Sau96I GGNCC 4 cut(s) 205, 378, 611, 1018
SchI GAGTC 2 cut(s) 689, 894
ScrFI CCNGG 4 cut(s) 403, 772, 839, 894
SduI GDGCHC 2 cut(s) 321, 547
SexAI ACCWGGT 1 cut(s) 401
SfaNI GCATC 4 cut(s) 538, 687, 1024, 1198
SfcI CTRYAG 2 cut(s) 462, 591
SfuI TTCGAA 1 cut(s) 1082
SinI GGWCC 3 cut(s) 205, 378, 611
SmiMI CAYNNNNRTG 2 cut(s) 86, 1165
SmlI CTYRAG 3 cut(s) 236, 299, 518
SmoI CTYRAG 3 cut(s) 236, 299, 518
SsiI CCGC 2 cut(s) 968, 1220
SspI AATATT 1 cut(s) 1323
SspMI CTAG 4 cut(s) 71, 504, 558, 1217
StyD4I CCNGG 4 cut(s) 401, 770, 837, 892
StyI CCWWGG 1 cut(s) 1203
TaqI TCGA 4 cut(s) 638, 808, 824, 1082
TatI WGTACW 1 cut(s) 1133
TauI GCSGC 1 cut(s) 1223
TfiI GAWTC 2 cut(s) 359, 674
Tru1I TTAA 2 cut(s) 788, 861
Tru9I TTAA 2 cut(s) 788, 861
TscAI CASTG 2 cut(s) 274, 559
TseFI GTSAC 3 cut(s) 256, 364, 666
TseI GCWGC 2 cut(s) 461, 1270
Tsp45I GTSAC 3 cut(s) 256, 364, 666
TspDTI ATGAA 4 cut(s) 443, 704, 1182, 1315
TspGWI ACGGA 1 cut(s) 352
TspRI CASTG 2 cut(s) 274, 559
VpaK11BI GGWCC 3 cut(s) 205, 378, 611
XagI CCTNNNNNAGG 1 cut(s) 22
XapI RAATTY 3 cut(s) 661, 691, 1119
XbaI TCTAGA 1 cut(s) 70
XceI RCATGY 2 cut(s) 68, 629
XmnI GAANNNNTTC 1 cut(s) 447
XspI CTAG 4 cut(s) 71, 504, 558, 1217
Zsp2I ATGCAT 1 cut(s) 1039
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.