MD08G1079800.v1.1

RING-type E3 ubiquitin transferase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
Physical Location & Seq
Reverse (-)
6643503 .. 6644825
1323 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1079800.v1.1.491

Sequence Viewer

Length: 1323 bp
ATGAAGTTTGATGCAGGCAGTGGTGGGCAAGTTCTAGATCTGGAGACTGCGGTGAAGGATGGAATTTTGGGCGGCGGAGGTGGGTTAATTTGCGGCGGCGGAGTTGGTGTTGTGGCGGATAAATTGGATCTGAAGAAGATGATTGAGGAGCTGGAGTCCATTGAGATTCCTTCAGTGTTCATCTGCCCGATTTCGTTGGAGCCAATGCAGGATCCGGTGACCCTTTGCACGGGTCAGACCTATGAGAGATCGAACATTCTCAAATGGTTCTCTTTGGGGCACTTCACTTGCCCCACAACAATGCAGGAGCTTTGGGATGATTCGGTCACGCCAAATATGACCCTCCACCAGCTGATTTGCAGCTGGTTTTCGCAGAAGTACGTGGCGATGAGGAAGCGGTCAGAGGACGTGCAGGGGAGGGCTCTGGAGATTTTGGACACATTAAAGAAGGTTAAGGGCCAAGCCAGAGTCCAAGCTCTCAAGGAGCTAAGAAGGGTAGTGGCAGCTCACGCTTCAGCTAAGAACACGGTGGTGGACAATGGGGGTGTTGCTTTGATCTCCTCTCTGTTGGGTCCTTTCACTTCGCATGCCGTTGGGTCGGAAGCAATTGGGATCCTTGTGAATTTGGATCTCAGTTCAGAGTCCAGGACGAGTCTGAAGCAACCTGCGAAGGTTTCATTGATGGTTGATATGTTGAACGAGGGATCGATTGAGACGAAGATCAATTGCACGAAGTTGATTGAGGTTTTGATGGAGGGCAAGGATTTGGAGTCCGAAAACGTCTCAAGCTTGAGTCTTGTGGTTGGATTGTTGAGATTGGTCAAGGATAAAAGAAACCCTAATGGGGTTTTGCCCGGTCTCAGTTTGCTCAAGACAATTTGTTCCCACGAATCAGTCAGGAACTCCGTTGTGAGCGTTGGGGCAGTTCCTCAATTGATTGAGCTCTTGCCCGGTTTGAATCACGAGTGTTTGGAGATAGCCCTTCATGTTCTGGAAGTTTTGTCAACACTTCCTGAGGGAAGGCAGGCTTTGAAAGATTGTCCCAAGACAATTCCCAGTGTAGTTAGAATACTGATGAAGGTTTCAGAGAGCTGCACTCAGCTCGCATTGTCCGTCTTGGGGGCGGTTTGCAAGCTAGCACCGGACGAATGCGCTCCTCTTGCGGTAGAGGCAGGTTTGGCAGCCAAGCTGCTGCTTGTAATTCAAAGTGGTTGCAATCCTGTGTTGAAGCAAAGAGCTGCTGAGCTCTTGAAGTTGTGTAGTCTAAATTATACCGCTACACATTTCATTTCGAAGTGTAAGCTTACTAGAACAATACAATGA

Protein Analysis

441

Amino Acids

47.26

Weight (kDa)

6.72

Isoelectric Point (pI)

43.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
U-box PF04564 56 - 126 3e-15 U-box domain
ARM_PUB PF25598 144 - 440 3.7e-86 Plant U-box protein ARM repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 673, 1163
AclWI GGATC 7 cut(s) 135, 206, 219, 607, 620, 636, 712
AcsI RAATTY 2 cut(s) 63, 622
AcuI CTGAAG 4 cut(s) 152, 156, 498, 677
AfaI GTAC 1 cut(s) 380
AfiI CCNNNNNNNGG 3 cut(s) 229, 844, 1119
AgsI TTSAA 6 cut(s) 697, 958, 1033, 1205, 1228, 1252
AjiI CACGTC 1 cut(s) 409
AjnI CCWGG 1 cut(s) 644
AleI CACNNNNGTG 1 cut(s) 530
Alw21I GWGCWC 2 cut(s) 945, 1248
Alw26I GTCTC 4 cut(s) 38, 707, 787, 863
AlwI GGATC 7 cut(s) 135, 206, 219, 607, 620, 636, 712
AoxI GGCC 1 cut(s) 457
ApeKI GCWGC 7 cut(s) 360, 503, 1092, 1181, 1189, 1192, 1238
ApoI RAATTY 2 cut(s) 63, 622
AspLEI GCGC 1 cut(s) 1154
AspS9I GGNCC 2 cut(s) 457, 572
AsuC2I CCSGG 2 cut(s) 855, 951
AsuHPI GGTGA 2 cut(s) 64, 229
AsuII TTCGAA 1 cut(s) 1292
AsuNHI GCTAGC 1 cut(s) 1135
AvaII GGWCC 1 cut(s) 572
AxyI CCTNAGG 1 cut(s) 1014
BaeGI GKGCMC 1 cut(s) 282
BamHI GGATCC 2 cut(s) 211, 612
BanII GRGCYC 3 cut(s) 424, 945, 1248
BauI CACGAG 1 cut(s) 962
Bbv12I GWGCWC 2 cut(s) 945, 1248
BbvI GCAGC 7 cut(s) 372, 515, 1079, 1176, 1179, 1193, 1225
BccI CCATC 3 cut(s) 53, 676, 745
BceAI ACGGC 1 cut(s) 575
BcgI CGANNNNNNTGC 2 cut(s) 1084, 1118
BciT130I CCWGG 1 cut(s) 646
BcnI CCSGG 2 cut(s) 855, 951
BcoDI GTCTC 4 cut(s) 38, 707, 787, 863
BfaI CTAG 3 cut(s) 35, 1136, 1308
BfuAI ACCTGC 2 cut(s) 673, 1163
BglII AGATCT 1 cut(s) 37
BlpI GCTNAGC 1 cut(s) 1242
Bme1390I CCNGG 3 cut(s) 646, 855, 951
Bme18I GGWCC 1 cut(s) 572
BmgBI CACGTC 1 cut(s) 409
BmgT120I GGNCC 2 cut(s) 457, 572
BmiI GGNNCC 4 cut(s) 201, 213, 573, 614
BmrFI CCNGG 3 cut(s) 646, 855, 951
BmrI ACTGGG 1 cut(s) 1050
BmtI GCTAGC 1 cut(s) 1139
BmuI ACTGGG 1 cut(s) 1050
BplI GAGNNNNNCTC 2 cut(s) 1081, 1113
BpmI CTGGAG 3 cut(s) 62, 173, 446
Bpu1102I GCTNAGC 1 cut(s) 1242
Bpu14I TTCGAA 1 cut(s) 1292
BpuEI CTTGAG 4 cut(s) 464, 769, 811, 854
BpuMI CCSGG 2 cut(s) 855, 951
Bsa29I ATCGAT 1 cut(s) 707
BsaAI YACGTR 1 cut(s) 382
BsaI GGTCTC 1 cut(s) 863
BsaWI WCCGGW 2 cut(s) 214, 1141
BsaXI ACNNNNNCTCC 4 cut(s) 93, 123, 140, 170
Bsc4I CCNNNNNNNGG 3 cut(s) 229, 844, 1119
Bse1I ACTGG 1 cut(s) 1056
Bse21I CCTNAGG 1 cut(s) 1014
BseBI CCWGG 1 cut(s) 646
BseCI ATCGAT 1 cut(s) 707
BseGI GGATG 2 cut(s) 64, 322
BseLI CCNNNNNNNGG 3 cut(s) 229, 844, 1119
BseMII CTCAG 5 cut(s) 646, 874, 1005, 1112, 1233
BseNI ACTGG 1 cut(s) 1056
BseRI GAGGAG 3 cut(s) 161, 550, 1146
BseSI GKGCMC 1 cut(s) 282
BseXI GCAGC 7 cut(s) 372, 515, 1079, 1176, 1179, 1193, 1225
BsgI GTGCAG 2 cut(s) 431, 1078
BshFI GGCC 1 cut(s) 459
BshVI ATCGAT 1 cut(s) 707
BsiHKAI GWGCWC 2 cut(s) 945, 1248
BsiSI CCGG 4 cut(s) 215, 855, 951, 1142
BslFI GGGAC 1 cut(s) 1026
BslI CCNNNNNNNGG 3 cut(s) 229, 844, 1119
BsmAI GTCTC 4 cut(s) 38, 707, 787, 863
BsmBI CGTCTC 2 cut(s) 707, 787
BsmFI GGGAC 1 cut(s) 1026
BsmI GAATGC 1 cut(s) 1154
BsnI GGCC 1 cut(s) 459
Bso31I GGTCTC 1 cut(s) 863
Bsp119I TTCGAA 1 cut(s) 1292
Bsp1286I GDGCHC 4 cut(s) 282, 424, 945, 1248
Bsp143I GATC 9 cut(s) 37, 127, 211, 248, 555, 612, 628, 704, 720
Bsp1720I GCTNAGC 1 cut(s) 1242
BspANI GGCC 1 cut(s) 459
BspCNI CTCAG 5 cut(s) 645, 873, 1006, 1111, 1234
BspDI ATCGAT 1 cut(s) 707
BspLI GGNNCC 4 cut(s) 201, 213, 573, 614
BspMI ACCTGC 2 cut(s) 673, 1163
BspOI GCTAGC 1 cut(s) 1139
BspPI GGATC 7 cut(s) 135, 206, 219, 607, 620, 636, 712
BspT104I TTCGAA 1 cut(s) 1292
BspTNI GGTCTC 1 cut(s) 863
BsrI ACTGG 1 cut(s) 1056
BssMI GATC 9 cut(s) 37, 127, 211, 248, 555, 612, 628, 704, 720
BssSI CACGAG 1 cut(s) 962
Bst2BI CACGAG 1 cut(s) 962
Bst2UI CCWGG 1 cut(s) 646
Bst4CI ACNGT 1 cut(s) 529
BstBAI YACGTR 1 cut(s) 382
BstBI TTCGAA 1 cut(s) 1292
BstC8I GCNNGC 6 cut(s) 16, 588, 1026, 1104, 1133, 1137
BstDEI CTNAG 7 cut(s) 488, 519, 632, 860, 1014, 1098, 1242
BstEII GGTNACC 1 cut(s) 217
BstF5I GGATG 2 cut(s) 64, 322
BstHHI GCGC 1 cut(s) 1154
BstKTI GATC 9 cut(s) 40, 130, 214, 251, 558, 615, 631, 707, 723
BstMAI GTCTC 4 cut(s) 38, 707, 787, 863
BstMBI GATC 9 cut(s) 37, 127, 211, 248, 555, 612, 628, 704, 720
BstMWI GCNNNNNNNGC 4 cut(s) 509, 1160, 1169, 1178
BstNI CCWGG 1 cut(s) 646
BstNSI RCATGY 1 cut(s) 590
BstPI GGTNACC 1 cut(s) 217
BstSCI CCNGG 3 cut(s) 644, 853, 949
BstSLI GKGCMC 1 cut(s) 282
BstV1I GCAGC 7 cut(s) 372, 515, 1079, 1176, 1179, 1193, 1225
BstX2I RGATCY 5 cut(s) 37, 127, 211, 612, 628
BstYI RGATCY 5 cut(s) 37, 127, 211, 612, 628
Bsu15I ATCGAT 1 cut(s) 707
Bsu36I CCTNAGG 1 cut(s) 1014
BsuRI GGCC 1 cut(s) 459
BsuTUI ATCGAT 1 cut(s) 707
BtgZI GCGATG 1 cut(s) 401
BtrI CACGTC 1 cut(s) 409
BtsCI GGATG 2 cut(s) 64, 322
BtsI GCAGTG 1 cut(s) 25
BtsIMutI CAGTG 3 cut(s) 25, 180, 1063
BveI ACCTGC 2 cut(s) 673, 1163
Cac8I GCNNGC 6 cut(s) 16, 588, 1026, 1104, 1133, 1137
CfoI GCGC 1 cut(s) 1154
Cfr13I GGNCC 2 cut(s) 457, 572
ClaI ATCGAT 1 cut(s) 707
Csp6I GTAC 1 cut(s) 379
CviAII CATG 2 cut(s) 587, 986
CviQI GTAC 1 cut(s) 379
DdeI CTNAG 7 cut(s) 488, 519, 632, 860, 1014, 1098, 1242
DpnI GATC 9 cut(s) 39, 129, 213, 250, 557, 614, 630, 706, 722
DpnII GATC 9 cut(s) 37, 127, 211, 248, 555, 612, 628, 704, 720
EciI GGCGGA 3 cut(s) 90, 114, 131
Ecl136II GAGCTC 2 cut(s) 943, 1246
Eco24I GRGCYC 3 cut(s) 424, 945, 1248
Eco31I GGTCTC 1 cut(s) 863
Eco47I GGWCC 1 cut(s) 572
Eco53kI GAGCTC 2 cut(s) 943, 1246
Eco57I CTGAAG 4 cut(s) 152, 156, 498, 677
Eco81I CCTNAGG 1 cut(s) 1014
Eco91I GGTNACC 1 cut(s) 217
EcoICRI GAGCTC 2 cut(s) 943, 1246
EcoO109I RGGNCCY 1 cut(s) 572
EcoO65I GGTNACC 1 cut(s) 217
EcoRII CCWGG 1 cut(s) 644
EcoT38I GRGCYC 3 cut(s) 424, 945, 1248
Esp3I CGTCTC 2 cut(s) 707, 787
FaeI CATG 2 cut(s) 590, 989
FaiI YATR 6 cut(s) 243, 338, 588, 692, 987, 1272
FalI AAGNNNNNCTT 2 cut(s) 1012, 1044
FaqI GGGAC 1 cut(s) 1026
FatI CATG 2 cut(s) 586, 985
FokI GGATG 2 cut(s) 71, 329
FriOI GRGCYC 3 cut(s) 424, 945, 1248
FspBI CTAG 3 cut(s) 35, 1136, 1308
GlaI GCGC 1 cut(s) 1153
GsuI CTGGAG 3 cut(s) 62, 173, 446
HaeIII GGCC 1 cut(s) 459
HapII CCGG 4 cut(s) 215, 855, 951, 1142
HhaI GCGC 1 cut(s) 1154
Hin1II CATG 2 cut(s) 590, 989
Hin6I GCGC 1 cut(s) 1152
HinP1I GCGC 1 cut(s) 1152
HincII GTYRAC 1 cut(s) 1005
HindII GTYRAC 1 cut(s) 1005
HindIII AAGCTT 2 cut(s) 787, 1301
HpaII CCGG 4 cut(s) 215, 855, 951, 1142
HphI GGTGA 2 cut(s) 64, 229
Hpy166II GTNNAC 2 cut(s) 535, 1005
Hpy188I TCNGA 8 cut(s) 132, 237, 403, 601, 640, 657, 775, 1087
Hpy188III TCNNGA 9 cut(s) 35, 41, 425, 871, 898, 962, 992, 1013, 1249
Hpy8I GTNNAC 2 cut(s) 535, 1005
HpyAV CCTTC 8 cut(s) 49, 180, 442, 486, 664, 992, 1014, 1072
HpyCH4III ACNGT 1 cut(s) 529
HpyCH4IV ACGT 3 cut(s) 381, 408, 780
HpyF10VI GCNNNNNNNGC 4 cut(s) 509, 1160, 1169, 1178
HpyF3I CTNAG 7 cut(s) 488, 519, 632, 860, 1014, 1098, 1242
HpySE526I ACGT 3 cut(s) 381, 408, 780
Hsp92II CATG 2 cut(s) 590, 989
HspAI GCGC 1 cut(s) 1152
Kzo9I GATC 9 cut(s) 37, 127, 211, 248, 555, 612, 628, 704, 720
LmnI GCTCC 5 cut(s) 148, 199, 307, 484, 1159
Lsp1109I GCAGC 7 cut(s) 372, 515, 1079, 1176, 1179, 1193, 1225
MaeI CTAG 3 cut(s) 35, 1136, 1308
MaeII ACGT 3 cut(s) 381, 408, 780
MaeIII GTNAC 2 cut(s) 217, 325
MalI GATC 9 cut(s) 39, 129, 213, 250, 557, 614, 630, 706, 722
MboI GATC 9 cut(s) 37, 127, 211, 248, 555, 612, 628, 704, 720
MboII GAAGA 3 cut(s) 145, 148, 730
MfeI CAATTG 3 cut(s) 606, 724, 932
MflI RGATCY 5 cut(s) 37, 127, 211, 612, 628
MhlI GDGCHC 4 cut(s) 282, 424, 945, 1248
MlyI GAGTC 6 cut(s) 164, 477, 650, 661, 779, 802
MmeI TCCRAC 3 cut(s) 177, 579, 784
MseI TTAA 3 cut(s) 86, 443, 453
MslI CAYNNNNRTG 2 cut(s) 299, 530
MspA1I CMGCKG 2 cut(s) 352, 363
MspI CCGG 4 cut(s) 215, 855, 951, 1142
MspR9I CCNGG 3 cut(s) 646, 855, 951
MunI CAATTG 3 cut(s) 606, 724, 932
Mva1269I GAATGC 1 cut(s) 1154
MvaI CCWGG 1 cut(s) 646
MwoI GCNNNNNNNGC 4 cut(s) 509, 1160, 1169, 1178
NciI CCSGG 2 cut(s) 855, 951
NdeII GATC 9 cut(s) 37, 127, 211, 248, 555, 612, 628, 704, 720
NheI GCTAGC 1 cut(s) 1135
NlaIII CATG 2 cut(s) 590, 989
NlaIV GGNNCC 4 cut(s) 201, 213, 573, 614
NmuCI GTSAC 2 cut(s) 217, 325
NspI RCATGY 1 cut(s) 590
NspV TTCGAA 1 cut(s) 1292
OliI CACNNNNGTG 1 cut(s) 530
PaeI GCATGC 1 cut(s) 590
PcsI WCGNNNNNNNCGW 2 cut(s) 713, 1110
PctI GAATGC 1 cut(s) 1154
PfeI GAWTC 4 cut(s) 166, 320, 890, 958
PfoI TCCNGGA 1 cut(s) 644
PleI GAGTC 6 cut(s) 163, 476, 649, 660, 778, 801
PpsI GAGTC 6 cut(s) 163, 476, 649, 660, 778, 801
Ppu21I YACGTR 1 cut(s) 382
PpuMI RGGWCCY 1 cut(s) 572
Psp124BI GAGCTC 2 cut(s) 945, 1248
Psp5II RGGWCCY 1 cut(s) 572
Psp6I CCWGG 1 cut(s) 644
PspEI GGTNACC 1 cut(s) 217
PspGI CCWGG 1 cut(s) 644
PspN4I GGNNCC 4 cut(s) 201, 213, 573, 614
PspPI GGNCC 2 cut(s) 457, 572
PspPPI RGGWCCY 1 cut(s) 572
PsuI RGATCY 5 cut(s) 37, 127, 211, 612, 628
PvuII CAGCTG 2 cut(s) 352, 363
RsaI GTAC 1 cut(s) 380
RsaNI GTAC 1 cut(s) 379
RseI CAYNNNNRTG 2 cut(s) 299, 530
SacI GAGCTC 2 cut(s) 945, 1248
SaqAI TTAA 3 cut(s) 86, 443, 453
Sau3AI GATC 9 cut(s) 37, 127, 211, 248, 555, 612, 628, 704, 720
Sau96I GGNCC 2 cut(s) 457, 572
SchI GAGTC 6 cut(s) 164, 477, 650, 661, 779, 802
ScrFI CCNGG 3 cut(s) 646, 855, 951
SduI GDGCHC 4 cut(s) 282, 424, 945, 1248
SfuI TTCGAA 1 cut(s) 1292
SinI GGWCC 1 cut(s) 572
SmiMI CAYNNNNRTG 2 cut(s) 299, 530
SmlI CTYRAG 4 cut(s) 479, 784, 790, 869
SmoI CTYRAG 4 cut(s) 479, 784, 790, 869
SphI GCATGC 1 cut(s) 590
SspMI CTAG 3 cut(s) 35, 1136, 1308
SstI GAGCTC 2 cut(s) 945, 1248
StyD4I CCNGG 3 cut(s) 644, 853, 949
TaaI ACNGT 1 cut(s) 529
TaiI ACGT 3 cut(s) 384, 411, 783
TaqI TCGA 3 cut(s) 251, 707, 1292
TaqII GACCGA 1 cut(s) 313
TauI GCSGC 3 cut(s) 75, 96, 99
TfiI GAWTC 4 cut(s) 166, 320, 890, 958
Tru1I TTAA 3 cut(s) 86, 443, 453
Tru9I TTAA 3 cut(s) 86, 443, 453
TscAI CASTG 3 cut(s) 25, 180, 1063
TseFI GTSAC 2 cut(s) 217, 325
TseI GCWGC 7 cut(s) 360, 503, 1092, 1181, 1189, 1192, 1238
Tsp45I GTSAC 2 cut(s) 217, 325
TspDTI ATGAA 6 cut(s) 17, 169, 666, 974, 1091, 1276
TspGWI ACGGA 2 cut(s) 895, 1102
TspRI CASTG 3 cut(s) 25, 180, 1063
VpaK11BI GGWCC 1 cut(s) 572
XapI RAATTY 2 cut(s) 63, 622
XbaI TCTAGA 1 cut(s) 34
XceI RCATGY 1 cut(s) 590
XspI CTAG 3 cut(s) 35, 1136, 1308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.