Prupe.6G218400_v2.0.a1

RING-type E3 ubiquitin transferase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Reverse (-)
22505372 .. 22508042
2671 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G218400.1

Sequence Viewer

Length: 1350 bp
ATGCCTATGTTTCAGCCCTCAAAGAGGGATGGGGTTGTTGGGTTTGATGGTGGTGGAGATGGGCATGTCATAGATCTGGACACAGCTGTGAAGGATGGGGTTTTGGGTGGTGTTGGTGGTGGGGTTGTTACTACTGGTGTTGGTGAGAAATTGGATCTGAGGAAGATGATTGAAGAGCTTGACTTGTCTGAGGTCCCTTCAGTGTTCATCTGCCCAATCTCCCTGGAGCCAATGCAAGACCCAGTGACCCTTTGCACTGGCCAAACCTATGAGAGCTCCAACATTCTCAAATGGTTCAGTTTGGGGCACCTCACCTGCCCCACCACAATGCAGGAGCTCTGGGACGATTCGATAACCCCGAATAGGACCCTTTACCATCTAATCTACACTTGGTTTTCTCAGAAGTATCTGCTCATGAAGAAGAGGTCTGAAGATGTTCAAGGAAGGGCTTCTGACCTTGTCGAGACACTAAAGAAGGTGAAGGGTCAAGCTAGGGTGCAAGCCCTCAAGGAGCTTCATCAAGTTGTGGCAGCTCACGCCACTGCCAGGAAGACACTGATTGATAAAGGTGGGGCTACTGTAGTTTCATCCCTGCTAGGTCCATTTACTTCACATGTTGTTGGTTCCGAAGTCATTGCCATTCTTGTCAATTTGACCCTTGATTCAGAATCGAGAACAAGTTTGATGCAACCAGCAAAAATTTCGTTAATGGTGGACATTCTGAATGAGGGGTCCATTGAGACAAAAATCAATTGTACCCGGTTGATCAAAATGCTGATGGAGGAGAAGGATTTTCGATCAGAAATAATTTCGAGCCATAGCCTCTTGGTAGGACTAATGAGGCTGGTGAAAGATAAGAGGCATACAGTTGGAATCTTGCCTGGACTTAGCCTCCTCAGAACAATATGCTTGCATAAGGAAGTAAGGGGTTTTATGGTGAGCATTGGGGCTGTGCCTCAGTTAGTTGATTGTTTGCCTTCTCTCGATCATGAATGCTTAGAACTAGCTCTTTTCATCTTGGATGCACTGTCCTCTCTACCGGAGGGAATATCAGCTTTGAAGGATTGTTTGAACACTATTCCGAATATGGTGAGGCTTCTTATGAGAATTTCAGAAAGTTGTACTCAATATGCACTGTCAATTTTATGGTCTGTATGTAAACATGCCCCTGAAGAATGCTCATCAATTGCTCTGGATGCTGGTCTAGCGGCAAAGCTCCTCCTTGTGATACAGAGTGCTTGCGGTCCTGTCCTGAAGCAGCAGTCTGCAGAGCTCTTGAAGCTTTGTAGTCTAAACTATACAGATACAATATTCATTTCCAAGTGCAAACTCACAAGGACAATCCAATGA

Protein Analysis

450

Amino Acids

49.1

Weight (kDa)

6.28

Isoelectric Point (pI)

47.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 323
Acc36I ACCTGC 1 cut(s) 323
AccB1I GGYRCC 1 cut(s) 306
AciI CCGC 2 cut(s) 1208, 1242
AclWI GGATC 1 cut(s) 162
AcoI YGGCCR 1 cut(s) 259
AcsI RAATTY 2 cut(s) 699, 1107
AcuI CTGAAG 4 cut(s) 183, 450, 1191, 1274
AfaI GTAC 2 cut(s) 757, 1123
AfiI CCNNNNNNNGG 3 cut(s) 24, 363, 546
AflIII ACRYGT 1 cut(s) 613
AgsI TTSAA 5 cut(s) 173, 440, 1060, 1072, 1279
AjnI CCWGG 3 cut(s) 222, 545, 880
AleI CACNNNNGTG 1 cut(s) 86
Alw21I GWGCWC 3 cut(s) 278, 339, 1275
Alw26I GTCTC 2 cut(s) 458, 734
AlwI GGATC 1 cut(s) 162
AoxI GGCC 1 cut(s) 259
ApeKI GCWGC 2 cut(s) 530, 1258
ApoI RAATTY 2 cut(s) 699, 1107
Asp700I GAANNNNTTC 2 cut(s) 435, 448
AspS9I GGNCC 5 cut(s) 193, 366, 599, 732, 1244
AsuC2I CCSGG 1 cut(s) 760
AsuHPI GGTGA 6 cut(s) 155, 304, 490, 859, 949, 1102
AvaII GGWCC 5 cut(s) 193, 366, 599, 732, 1244
BaeGI GKGCMC 1 cut(s) 309
BalI TGGCCA 1 cut(s) 261
BanI GGYRCC 1 cut(s) 306
BanII GRGCYC 3 cut(s) 278, 339, 1275
BbsI GAAGAC 1 cut(s) 557
Bbv12I GWGCWC 3 cut(s) 278, 339, 1275
BbvI GCAGC 2 cut(s) 542, 1270
BccI CCATC 6 cut(s) 23, 41, 53, 89, 384, 772
BcgI CGANNNNNNTGC 4 cut(s) 617, 651, 684, 718
BciT130I CCWGG 3 cut(s) 224, 547, 882
BclI TGATCA 1 cut(s) 765
BcnI CCSGG 1 cut(s) 760
BcoDI GTCTC 2 cut(s) 458, 734
BfaI CTAG 4 cut(s) 492, 596, 1004, 1205
BfmI CTRYAG 2 cut(s) 579, 1266
BfuAI ACCTGC 1 cut(s) 323
BglII AGATCT 1 cut(s) 73
BisI GCNGC 3 cut(s) 531, 1209, 1259
BlsI GCNGC 3 cut(s) 532, 1210, 1260
Bme1390I CCNGG 4 cut(s) 224, 547, 760, 882
Bme18I GGWCC 5 cut(s) 193, 366, 599, 732, 1244
BmgT120I GGNCC 5 cut(s) 193, 366, 599, 732, 1244
BmiI GGNNCC 6 cut(s) 195, 228, 308, 368, 625, 733
BmrFI CCNGG 4 cut(s) 224, 547, 760, 882
BmrI ACTGGG 1 cut(s) 236
BmsI GCATC 3 cut(s) 675, 1012, 1186
BmuI ACTGGG 1 cut(s) 236
BpiI GAAGAC 1 cut(s) 557
BpmI CTGGAG 1 cut(s) 245
BpuEI CTTGAG 1 cut(s) 491
BpuMI CCSGG 1 cut(s) 760
BsaJI CCNNGG 1 cut(s) 222
BsaWI WCCGGW 1 cut(s) 1039
BsaXI ACNNNNNCTCC 2 cut(s) 876, 906
Bsc4I CCNNNNNNNGG 3 cut(s) 24, 363, 546
Bse1I ACTGG 3 cut(s) 139, 242, 262
Bse3DI GCAATG 1 cut(s) 633
BseBI CCWGG 3 cut(s) 224, 547, 882
BseDI CCNNGG 1 cut(s) 222
BseGI GGATG 5 cut(s) 34, 100, 587, 1027, 1201
BseLI CCNNNNNNNGG 3 cut(s) 24, 363, 546
BseMI GCAATG 1 cut(s) 633
BseMII CTCAG 5 cut(s) 149, 180, 413, 910, 971
BseNI ACTGG 3 cut(s) 139, 242, 262
BseRI GAGGAG 3 cut(s) 797, 884, 1208
BseSI GKGCMC 1 cut(s) 309
BseXI GCAGC 2 cut(s) 542, 1270
BshFI GGCC 1 cut(s) 261
BshNI GGYRCC 1 cut(s) 306
BsiHKAI GWGCWC 3 cut(s) 278, 339, 1275
BsiSI CCGG 2 cut(s) 760, 1040
BslFI GGGAC 2 cut(s) 179, 356
BslI CCNNNNNNNGG 3 cut(s) 24, 363, 546
BsmAI GTCTC 2 cut(s) 458, 734
BsmFI GGGAC 2 cut(s) 179, 356
BsmI GAATGC 2 cut(s) 998, 1181
BsnI GGCC 1 cut(s) 261
Bsp1286I GDGCHC 4 cut(s) 278, 309, 339, 1275
Bsp143I GATC 5 cut(s) 73, 154, 765, 797, 985
BspACI CCGC 2 cut(s) 1208, 1242
BspANI GGCC 1 cut(s) 261
BspCNI CTCAG 5 cut(s) 150, 181, 412, 909, 970
BspHI TCATGA 2 cut(s) 414, 988
BspLI GGNNCC 6 cut(s) 195, 228, 308, 368, 625, 733
BspMAI CTGCAG 1 cut(s) 1270
BspMI ACCTGC 1 cut(s) 323
BspPI GGATC 1 cut(s) 162
BspQI GCTCTTC 1 cut(s) 168
BspT107I GGYRCC 1 cut(s) 306
BsrDI GCAATG 1 cut(s) 633
BsrI ACTGG 3 cut(s) 139, 242, 262
BssECI CCNNGG 1 cut(s) 222
BssMI GATC 5 cut(s) 73, 154, 765, 797, 985
Bst2UI CCWGG 3 cut(s) 224, 547, 882
Bst4CI ACNGT 4 cut(s) 580, 868, 1029, 1137
Bst6I CTCTTC 2 cut(s) 168, 416
BstC8I GCNNGC 3 cut(s) 501, 911, 1240
BstDEI CTNAG 7 cut(s) 158, 189, 399, 887, 896, 957, 997
BstENI CCTNNNNNAGG 1 cut(s) 22
BstF5I GGATG 5 cut(s) 34, 100, 587, 1027, 1201
BstKTI GATC 5 cut(s) 76, 157, 768, 800, 988
BstMAI GTCTC 2 cut(s) 458, 734
BstMBI GATC 5 cut(s) 73, 154, 765, 797, 985
BstMWI GCNNNNNNNGC 4 cut(s) 536, 1196, 1205, 1279
BstNI CCWGG 3 cut(s) 224, 547, 882
BstNSI RCATGY 3 cut(s) 68, 617, 1166
BstSCI CCNGG 4 cut(s) 222, 545, 758, 880
BstSFI CTRYAG 2 cut(s) 579, 1266
BstSLI GKGCMC 1 cut(s) 309
BstV1I GCAGC 2 cut(s) 542, 1270
BstV2I GAAGAC 1 cut(s) 557
BstX2I RGATCY 2 cut(s) 73, 154
BstYI RGATCY 2 cut(s) 73, 154
BsuRI GGCC 1 cut(s) 261
BtsCI GGATG 5 cut(s) 34, 100, 587, 1027, 1201
BtsI GCAGTG 1 cut(s) 540
BtsIMutI CAGTG 7 cut(s) 207, 249, 255, 540, 554, 1025, 1133
BveI ACCTGC 1 cut(s) 323
Cac8I GCNNGC 3 cut(s) 501, 911, 1240
CciI TCATGA 2 cut(s) 414, 988
Cfr13I GGNCC 5 cut(s) 193, 366, 599, 732, 1244
Csp6I GTAC 2 cut(s) 756, 1122
CviAII CATG 5 cut(s) 65, 415, 614, 989, 1163
CviQI GTAC 2 cut(s) 756, 1122
DdeI CTNAG 7 cut(s) 158, 189, 399, 887, 896, 957, 997
DpnI GATC 5 cut(s) 75, 156, 767, 799, 987
DpnII GATC 5 cut(s) 73, 154, 765, 797, 985
EaeI YGGCCR 1 cut(s) 259
Eam1104I CTCTTC 2 cut(s) 168, 416
EarI CTCTTC 2 cut(s) 168, 416
Ecl136II GAGCTC 3 cut(s) 276, 337, 1273
Eco24I GRGCYC 3 cut(s) 278, 339, 1275
Eco47I GGWCC 5 cut(s) 193, 366, 599, 732, 1244
Eco53kI GAGCTC 3 cut(s) 276, 337, 1273
Eco57I CTGAAG 4 cut(s) 183, 450, 1191, 1274
EcoICRI GAGCTC 3 cut(s) 276, 337, 1273
EcoNI CCTNNNNNAGG 1 cut(s) 22
EcoO109I RGGNCCY 2 cut(s) 193, 366
EcoRII CCWGG 3 cut(s) 222, 545, 880
EcoT38I GRGCYC 3 cut(s) 278, 339, 1275
FaeI CATG 5 cut(s) 68, 418, 617, 992, 1166
FaqI GGGAC 2 cut(s) 179, 356
FatI CATG 5 cut(s) 64, 414, 613, 988, 1162
FbaI TGATCA 1 cut(s) 765
Fnu4HI GCNGC 3 cut(s) 531, 1209, 1259
FokI GGATG 5 cut(s) 41, 107, 574, 1034, 1208
FriOI GRGCYC 3 cut(s) 278, 339, 1275
Fsp4HI GCNGC 3 cut(s) 531, 1209, 1259
FspBI CTAG 4 cut(s) 492, 596, 1004, 1205
GluI GCNGC 3 cut(s) 531, 1209, 1259
GsuI CTGGAG 1 cut(s) 245
HaeIII GGCC 1 cut(s) 261
HapII CCGG 2 cut(s) 760, 1040
Hin1II CATG 5 cut(s) 68, 418, 617, 992, 1166
HindIII AAGCTT 1 cut(s) 1280
HinfI GANTC 4 cut(s) 347, 662, 668, 873
HpaII CCGG 2 cut(s) 760, 1040
HphI GGTGA 6 cut(s) 155, 304, 490, 859, 949, 1102
Hpy166II GTNNAC 2 cut(s) 715, 1160
Hpy188III TCNNGA 9 cut(s) 77, 415, 463, 672, 983, 989, 1193, 1252, 1276
Hpy8I GTNNAC 2 cut(s) 715, 1160
HpyAV CCTTC 8 cut(s) 85, 207, 438, 469, 475, 781, 987, 1054
HpyCH4III ACNGT 4 cut(s) 580, 868, 1029, 1137
HpyF10VI GCNNNNNNNGC 4 cut(s) 536, 1196, 1205, 1279
HpyF3I CTNAG 7 cut(s) 158, 189, 399, 887, 896, 957, 997
Hsp92II CATG 5 cut(s) 68, 418, 617, 992, 1166
Ksp22I TGATCA 1 cut(s) 765
Kzo9I GATC 5 cut(s) 73, 154, 765, 797, 985
LguI GCTCTTC 1 cut(s) 168
LmnI GCTCC 5 cut(s) 226, 281, 334, 511, 1221
Lsp1109I GCAGC 2 cut(s) 542, 1270
LweI GCATC 3 cut(s) 675, 1012, 1186
MaeI CTAG 4 cut(s) 492, 596, 1004, 1205
MaeIII GTNAC 2 cut(s) 127, 244
MalI GATC 5 cut(s) 75, 156, 767, 799, 987
MboI GATC 5 cut(s) 73, 154, 765, 797, 985
MboII GAAGA 7 cut(s) 175, 185, 430, 433, 443, 562, 1184
MfeI CAATTG 2 cut(s) 751, 1185
MflI RGATCY 2 cut(s) 73, 154
MhlI GDGCHC 4 cut(s) 278, 309, 339, 1275
MlsI TGGCCA 1 cut(s) 261
MluCI AATT 8 cut(s) 149, 649, 699, 751, 807, 1107, 1140, 1185
MluNI TGGCCA 1 cut(s) 261
MmeI TCCRAC 2 cut(s) 303, 850
Mox20I TGGCCA 1 cut(s) 261
MroXI GAANNNNTTC 2 cut(s) 435, 448
MscI TGGCCA 1 cut(s) 261
MseI TTAA 1 cut(s) 707
MslI CAYNNNNRTG 2 cut(s) 86, 326
Msp20I TGGCCA 1 cut(s) 261
MspA1I CMGCKG 1 cut(s) 86
MspI CCGG 2 cut(s) 760, 1040
MspR9I CCNGG 4 cut(s) 224, 547, 760, 882
MunI CAATTG 2 cut(s) 751, 1185
Mva1269I GAATGC 2 cut(s) 998, 1181
MvaI CCWGG 3 cut(s) 224, 547, 882
MwoI GCNNNNNNNGC 4 cut(s) 536, 1196, 1205, 1279
NciI CCSGG 1 cut(s) 760
NdeII GATC 5 cut(s) 73, 154, 765, 797, 985
NlaIII CATG 5 cut(s) 68, 418, 617, 992, 1166
NlaIV GGNNCC 6 cut(s) 195, 228, 308, 368, 625, 733
NmuCI GTSAC 1 cut(s) 244
NspI RCATGY 3 cut(s) 68, 617, 1166
OliI CACNNNNGTG 1 cut(s) 86
PagI TCATGA 2 cut(s) 414, 988
PaqCI CACCTGC 1 cut(s) 323
PciI ACATGT 1 cut(s) 613
PciSI GCTCTTC 1 cut(s) 168
PcsI WCGNNNNNNNCGW 1 cut(s) 356
PctI GAATGC 2 cut(s) 998, 1181
PdmI GAANNNNTTC 2 cut(s) 435, 448
PfeI GAWTC 4 cut(s) 347, 662, 668, 873
PflFI GACNNNGTC 1 cut(s) 458
PkrI GCNGC 3 cut(s) 532, 1210, 1260
PpuMI RGGWCCY 2 cut(s) 193, 366
PscI ACATGT 1 cut(s) 613
Psp124BI GAGCTC 3 cut(s) 278, 339, 1275
Psp5II RGGWCCY 2 cut(s) 193, 366
Psp6I CCWGG 3 cut(s) 222, 545, 880
PspGI CCWGG 3 cut(s) 222, 545, 880
PspN4I GGNNCC 6 cut(s) 195, 228, 308, 368, 625, 733
PspPI GGNCC 5 cut(s) 193, 366, 599, 732, 1244
PspPPI RGGWCCY 2 cut(s) 193, 366
PstI CTGCAG 1 cut(s) 1270
PsuI RGATCY 2 cut(s) 73, 154
PsyI GACNNNGTC 1 cut(s) 458
PvuII CAGCTG 1 cut(s) 86
RsaI GTAC 2 cut(s) 757, 1123
RsaNI GTAC 2 cut(s) 756, 1122
RseI CAYNNNNRTG 2 cut(s) 86, 326
SacI GAGCTC 3 cut(s) 278, 339, 1275
SapI GCTCTTC 1 cut(s) 168
SaqAI TTAA 1 cut(s) 707
SatI GCNGC 3 cut(s) 531, 1209, 1259
Sau3AI GATC 5 cut(s) 73, 154, 765, 797, 985
Sau96I GGNCC 5 cut(s) 193, 366, 599, 732, 1244
ScrFI CCNGG 4 cut(s) 224, 547, 760, 882
SduI GDGCHC 4 cut(s) 278, 309, 339, 1275
SfaNI GCATC 3 cut(s) 675, 1012, 1186
SfcI CTRYAG 2 cut(s) 579, 1266
SinI GGWCC 5 cut(s) 193, 366, 599, 732, 1244
SmiMI CAYNNNNRTG 2 cut(s) 86, 326
SmlI CTYRAG 1 cut(s) 506
SmoI CTYRAG 1 cut(s) 506
Sse9I AATT 8 cut(s) 149, 649, 699, 751, 807, 1107, 1140, 1185
SsiI CCGC 2 cut(s) 1208, 1242
SspI AATATT 1 cut(s) 1311
SspMI CTAG 4 cut(s) 492, 596, 1004, 1205
SstI GAGCTC 3 cut(s) 278, 339, 1275
StyD4I CCNGG 4 cut(s) 222, 545, 758, 880
TaaI ACNGT 4 cut(s) 580, 868, 1029, 1137
TaqI TCGA 6 cut(s) 350, 462, 671, 796, 812, 984
TasI AATT 8 cut(s) 149, 649, 699, 751, 807, 1107, 1140, 1185
TatI WGTACW 1 cut(s) 1121
TauI GCSGC 1 cut(s) 1211
TfiI GAWTC 4 cut(s) 347, 662, 668, 873
Tru1I TTAA 1 cut(s) 707
Tru9I TTAA 1 cut(s) 707
TscAI CASTG 7 cut(s) 207, 249, 262, 547, 561, 1032, 1140
TseFI GTSAC 1 cut(s) 244
TseI GCWGC 2 cut(s) 530, 1258
Tsp45I GTSAC 1 cut(s) 244
TspDTI ATGAA 7 cut(s) 196, 431, 506, 576, 1003, 1005, 1303
TspRI CASTG 7 cut(s) 207, 249, 262, 547, 561, 1032, 1140
Tth111I GACNNNGTC 1 cut(s) 458
VpaK11BI GGWCC 5 cut(s) 193, 366, 599, 732, 1244
XagI CCTNNNNNAGG 1 cut(s) 22
XapI RAATTY 2 cut(s) 699, 1107
XceI RCATGY 3 cut(s) 68, 617, 1166
XmnI GAANNNNTTC 2 cut(s) 435, 448
XspI CTAG 4 cut(s) 492, 596, 1004, 1205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.