RING-type E3 ubiquitin transferase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G49810 AT5G65920 AT5G65920 |
| fragaria_vesca | FvH4_1g18010 FvH4_1g18010 FvH4_1g18010 FvH4_2g32810 |
| malus_domestica | MD08G1079800.v1.1 MD15G1066700.v1.1 |
| prunus_persica | Prupe.1G420500_v2.0.a1 Prupe.6G218400_v2.0.a1 |
| pyrus_communis | pycom08g06590 pycom15g06330 |
| rosa_chinensis | RchiOBHm_Chr2g0108501 RchiOBHm_Chr6g0309891 |
| rosa_laevigata | RLG00000010526 RLG00000017673 |
| rosa_multiflora | Rmu_co8433595.1_g000001 Rmu_sc0000294.1_g000001 Rmu_sc0002372.1_g000052 Rmu_sc0009846.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00135090 Rroxscaffold_7G00159070 |
| rosa_rugosa | Rorug02G0153700 Rorug06G0375700.1 |
| rosa_samantha | Rh2AG202600 Rh2BG215500 Rh2CG206700 Rh2DG209800 Rh6AG489500 Rh6BG498900 Rh6CG503700 Rh6DG489900 |
| rosa_wichuraiana | Rw2G016190 Rw6G042600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 323 |
| Acc36I | ACCTGC | 1 cut(s) | 323 |
| AccB1I | GGYRCC | 1 cut(s) | 306 |
| AciI | CCGC | 2 cut(s) | 1208, 1242 |
| AclWI | GGATC | 1 cut(s) | 162 |
| AcoI | YGGCCR | 1 cut(s) | 259 |
| AcsI | RAATTY | 2 cut(s) | 699, 1107 |
| AcuI | CTGAAG | 4 cut(s) | 183, 450, 1191, 1274 |
| AfaI | GTAC | 2 cut(s) | 757, 1123 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 24, 363, 546 |
| AflIII | ACRYGT | 1 cut(s) | 613 |
| AgsI | TTSAA | 5 cut(s) | 173, 440, 1060, 1072, 1279 |
| AjnI | CCWGG | 3 cut(s) | 222, 545, 880 |
| AleI | CACNNNNGTG | 1 cut(s) | 86 |
| Alw21I | GWGCWC | 3 cut(s) | 278, 339, 1275 |
| Alw26I | GTCTC | 2 cut(s) | 458, 734 |
| AlwI | GGATC | 1 cut(s) | 162 |
| AoxI | GGCC | 1 cut(s) | 259 |
| ApeKI | GCWGC | 2 cut(s) | 530, 1258 |
| ApoI | RAATTY | 2 cut(s) | 699, 1107 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 435, 448 |
| AspS9I | GGNCC | 5 cut(s) | 193, 366, 599, 732, 1244 |
| AsuC2I | CCSGG | 1 cut(s) | 760 |
| AsuHPI | GGTGA | 6 cut(s) | 155, 304, 490, 859, 949, 1102 |
| AvaII | GGWCC | 5 cut(s) | 193, 366, 599, 732, 1244 |
| BaeGI | GKGCMC | 1 cut(s) | 309 |
| BalI | TGGCCA | 1 cut(s) | 261 |
| BanI | GGYRCC | 1 cut(s) | 306 |
| BanII | GRGCYC | 3 cut(s) | 278, 339, 1275 |
| BbsI | GAAGAC | 1 cut(s) | 557 |
| Bbv12I | GWGCWC | 3 cut(s) | 278, 339, 1275 |
| BbvI | GCAGC | 2 cut(s) | 542, 1270 |
| BccI | CCATC | 6 cut(s) | 23, 41, 53, 89, 384, 772 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 617, 651, 684, 718 |
| BciT130I | CCWGG | 3 cut(s) | 224, 547, 882 |
| BclI | TGATCA | 1 cut(s) | 765 |
| BcnI | CCSGG | 1 cut(s) | 760 |
| BcoDI | GTCTC | 2 cut(s) | 458, 734 |
| BfaI | CTAG | 4 cut(s) | 492, 596, 1004, 1205 |
| BfmI | CTRYAG | 2 cut(s) | 579, 1266 |
| BfuAI | ACCTGC | 1 cut(s) | 323 |
| BglII | AGATCT | 1 cut(s) | 73 |
| BisI | GCNGC | 3 cut(s) | 531, 1209, 1259 |
| BlsI | GCNGC | 3 cut(s) | 532, 1210, 1260 |
| Bme1390I | CCNGG | 4 cut(s) | 224, 547, 760, 882 |
| Bme18I | GGWCC | 5 cut(s) | 193, 366, 599, 732, 1244 |
| BmgT120I | GGNCC | 5 cut(s) | 193, 366, 599, 732, 1244 |
| BmiI | GGNNCC | 6 cut(s) | 195, 228, 308, 368, 625, 733 |
| BmrFI | CCNGG | 4 cut(s) | 224, 547, 760, 882 |
| BmrI | ACTGGG | 1 cut(s) | 236 |
| BmsI | GCATC | 3 cut(s) | 675, 1012, 1186 |
| BmuI | ACTGGG | 1 cut(s) | 236 |
| BpiI | GAAGAC | 1 cut(s) | 557 |
| BpmI | CTGGAG | 1 cut(s) | 245 |
| BpuEI | CTTGAG | 1 cut(s) | 491 |
| BpuMI | CCSGG | 1 cut(s) | 760 |
| BsaJI | CCNNGG | 1 cut(s) | 222 |
| BsaWI | WCCGGW | 1 cut(s) | 1039 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 876, 906 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 24, 363, 546 |
| Bse1I | ACTGG | 3 cut(s) | 139, 242, 262 |
| Bse3DI | GCAATG | 1 cut(s) | 633 |
| BseBI | CCWGG | 3 cut(s) | 224, 547, 882 |
| BseDI | CCNNGG | 1 cut(s) | 222 |
| BseGI | GGATG | 5 cut(s) | 34, 100, 587, 1027, 1201 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 24, 363, 546 |
| BseMI | GCAATG | 1 cut(s) | 633 |
| BseMII | CTCAG | 5 cut(s) | 149, 180, 413, 910, 971 |
| BseNI | ACTGG | 3 cut(s) | 139, 242, 262 |
| BseRI | GAGGAG | 3 cut(s) | 797, 884, 1208 |
| BseSI | GKGCMC | 1 cut(s) | 309 |
| BseXI | GCAGC | 2 cut(s) | 542, 1270 |
| BshFI | GGCC | 1 cut(s) | 261 |
| BshNI | GGYRCC | 1 cut(s) | 306 |
| BsiHKAI | GWGCWC | 3 cut(s) | 278, 339, 1275 |
| BsiSI | CCGG | 2 cut(s) | 760, 1040 |
| BslFI | GGGAC | 2 cut(s) | 179, 356 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 24, 363, 546 |
| BsmAI | GTCTC | 2 cut(s) | 458, 734 |
| BsmFI | GGGAC | 2 cut(s) | 179, 356 |
| BsmI | GAATGC | 2 cut(s) | 998, 1181 |
| BsnI | GGCC | 1 cut(s) | 261 |
| Bsp1286I | GDGCHC | 4 cut(s) | 278, 309, 339, 1275 |
| Bsp143I | GATC | 5 cut(s) | 73, 154, 765, 797, 985 |
| BspACI | CCGC | 2 cut(s) | 1208, 1242 |
| BspANI | GGCC | 1 cut(s) | 261 |
| BspCNI | CTCAG | 5 cut(s) | 150, 181, 412, 909, 970 |
| BspHI | TCATGA | 2 cut(s) | 414, 988 |
| BspLI | GGNNCC | 6 cut(s) | 195, 228, 308, 368, 625, 733 |
| BspMAI | CTGCAG | 1 cut(s) | 1270 |
| BspMI | ACCTGC | 1 cut(s) | 323 |
| BspPI | GGATC | 1 cut(s) | 162 |
| BspQI | GCTCTTC | 1 cut(s) | 168 |
| BspT107I | GGYRCC | 1 cut(s) | 306 |
| BsrDI | GCAATG | 1 cut(s) | 633 |
| BsrI | ACTGG | 3 cut(s) | 139, 242, 262 |
| BssECI | CCNNGG | 1 cut(s) | 222 |
| BssMI | GATC | 5 cut(s) | 73, 154, 765, 797, 985 |
| Bst2UI | CCWGG | 3 cut(s) | 224, 547, 882 |
| Bst4CI | ACNGT | 4 cut(s) | 580, 868, 1029, 1137 |
| Bst6I | CTCTTC | 2 cut(s) | 168, 416 |
| BstC8I | GCNNGC | 3 cut(s) | 501, 911, 1240 |
| BstDEI | CTNAG | 7 cut(s) | 158, 189, 399, 887, 896, 957, 997 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 22 |
| BstF5I | GGATG | 5 cut(s) | 34, 100, 587, 1027, 1201 |
| BstKTI | GATC | 5 cut(s) | 76, 157, 768, 800, 988 |
| BstMAI | GTCTC | 2 cut(s) | 458, 734 |
| BstMBI | GATC | 5 cut(s) | 73, 154, 765, 797, 985 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 536, 1196, 1205, 1279 |
| BstNI | CCWGG | 3 cut(s) | 224, 547, 882 |
| BstNSI | RCATGY | 3 cut(s) | 68, 617, 1166 |
| BstSCI | CCNGG | 4 cut(s) | 222, 545, 758, 880 |
| BstSFI | CTRYAG | 2 cut(s) | 579, 1266 |
| BstSLI | GKGCMC | 1 cut(s) | 309 |
| BstV1I | GCAGC | 2 cut(s) | 542, 1270 |
| BstV2I | GAAGAC | 1 cut(s) | 557 |
| BstX2I | RGATCY | 2 cut(s) | 73, 154 |
| BstYI | RGATCY | 2 cut(s) | 73, 154 |
| BsuRI | GGCC | 1 cut(s) | 261 |
| BtsCI | GGATG | 5 cut(s) | 34, 100, 587, 1027, 1201 |
| BtsI | GCAGTG | 1 cut(s) | 540 |
| BtsIMutI | CAGTG | 7 cut(s) | 207, 249, 255, 540, 554, 1025, 1133 |
| BveI | ACCTGC | 1 cut(s) | 323 |
| Cac8I | GCNNGC | 3 cut(s) | 501, 911, 1240 |
| CciI | TCATGA | 2 cut(s) | 414, 988 |
| Cfr13I | GGNCC | 5 cut(s) | 193, 366, 599, 732, 1244 |
| Csp6I | GTAC | 2 cut(s) | 756, 1122 |
| CviAII | CATG | 5 cut(s) | 65, 415, 614, 989, 1163 |
| CviQI | GTAC | 2 cut(s) | 756, 1122 |
| DdeI | CTNAG | 7 cut(s) | 158, 189, 399, 887, 896, 957, 997 |
| DpnI | GATC | 5 cut(s) | 75, 156, 767, 799, 987 |
| DpnII | GATC | 5 cut(s) | 73, 154, 765, 797, 985 |
| EaeI | YGGCCR | 1 cut(s) | 259 |
| Eam1104I | CTCTTC | 2 cut(s) | 168, 416 |
| EarI | CTCTTC | 2 cut(s) | 168, 416 |
| Ecl136II | GAGCTC | 3 cut(s) | 276, 337, 1273 |
| Eco24I | GRGCYC | 3 cut(s) | 278, 339, 1275 |
| Eco47I | GGWCC | 5 cut(s) | 193, 366, 599, 732, 1244 |
| Eco53kI | GAGCTC | 3 cut(s) | 276, 337, 1273 |
| Eco57I | CTGAAG | 4 cut(s) | 183, 450, 1191, 1274 |
| EcoICRI | GAGCTC | 3 cut(s) | 276, 337, 1273 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 22 |
| EcoO109I | RGGNCCY | 2 cut(s) | 193, 366 |
| EcoRII | CCWGG | 3 cut(s) | 222, 545, 880 |
| EcoT38I | GRGCYC | 3 cut(s) | 278, 339, 1275 |
| FaeI | CATG | 5 cut(s) | 68, 418, 617, 992, 1166 |
| FaqI | GGGAC | 2 cut(s) | 179, 356 |
| FatI | CATG | 5 cut(s) | 64, 414, 613, 988, 1162 |
| FbaI | TGATCA | 1 cut(s) | 765 |
| Fnu4HI | GCNGC | 3 cut(s) | 531, 1209, 1259 |
| FokI | GGATG | 5 cut(s) | 41, 107, 574, 1034, 1208 |
| FriOI | GRGCYC | 3 cut(s) | 278, 339, 1275 |
| Fsp4HI | GCNGC | 3 cut(s) | 531, 1209, 1259 |
| FspBI | CTAG | 4 cut(s) | 492, 596, 1004, 1205 |
| GluI | GCNGC | 3 cut(s) | 531, 1209, 1259 |
| GsuI | CTGGAG | 1 cut(s) | 245 |
| HaeIII | GGCC | 1 cut(s) | 261 |
| HapII | CCGG | 2 cut(s) | 760, 1040 |
| Hin1II | CATG | 5 cut(s) | 68, 418, 617, 992, 1166 |
| HindIII | AAGCTT | 1 cut(s) | 1280 |
| HinfI | GANTC | 4 cut(s) | 347, 662, 668, 873 |
| HpaII | CCGG | 2 cut(s) | 760, 1040 |
| HphI | GGTGA | 6 cut(s) | 155, 304, 490, 859, 949, 1102 |
| Hpy166II | GTNNAC | 2 cut(s) | 715, 1160 |
| Hpy188III | TCNNGA | 9 cut(s) | 77, 415, 463, 672, 983, 989, 1193, 1252, 1276 |
| Hpy8I | GTNNAC | 2 cut(s) | 715, 1160 |
| HpyAV | CCTTC | 8 cut(s) | 85, 207, 438, 469, 475, 781, 987, 1054 |
| HpyCH4III | ACNGT | 4 cut(s) | 580, 868, 1029, 1137 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 536, 1196, 1205, 1279 |
| HpyF3I | CTNAG | 7 cut(s) | 158, 189, 399, 887, 896, 957, 997 |
| Hsp92II | CATG | 5 cut(s) | 68, 418, 617, 992, 1166 |
| Ksp22I | TGATCA | 1 cut(s) | 765 |
| Kzo9I | GATC | 5 cut(s) | 73, 154, 765, 797, 985 |
| LguI | GCTCTTC | 1 cut(s) | 168 |
| LmnI | GCTCC | 5 cut(s) | 226, 281, 334, 511, 1221 |
| Lsp1109I | GCAGC | 2 cut(s) | 542, 1270 |
| LweI | GCATC | 3 cut(s) | 675, 1012, 1186 |
| MaeI | CTAG | 4 cut(s) | 492, 596, 1004, 1205 |
| MaeIII | GTNAC | 2 cut(s) | 127, 244 |
| MalI | GATC | 5 cut(s) | 75, 156, 767, 799, 987 |
| MboI | GATC | 5 cut(s) | 73, 154, 765, 797, 985 |
| MboII | GAAGA | 7 cut(s) | 175, 185, 430, 433, 443, 562, 1184 |
| MfeI | CAATTG | 2 cut(s) | 751, 1185 |
| MflI | RGATCY | 2 cut(s) | 73, 154 |
| MhlI | GDGCHC | 4 cut(s) | 278, 309, 339, 1275 |
| MlsI | TGGCCA | 1 cut(s) | 261 |
| MluCI | AATT | 8 cut(s) | 149, 649, 699, 751, 807, 1107, 1140, 1185 |
| MluNI | TGGCCA | 1 cut(s) | 261 |
| MmeI | TCCRAC | 2 cut(s) | 303, 850 |
| Mox20I | TGGCCA | 1 cut(s) | 261 |
| MroXI | GAANNNNTTC | 2 cut(s) | 435, 448 |
| MscI | TGGCCA | 1 cut(s) | 261 |
| MseI | TTAA | 1 cut(s) | 707 |
| MslI | CAYNNNNRTG | 2 cut(s) | 86, 326 |
| Msp20I | TGGCCA | 1 cut(s) | 261 |
| MspA1I | CMGCKG | 1 cut(s) | 86 |
| MspI | CCGG | 2 cut(s) | 760, 1040 |
| MspR9I | CCNGG | 4 cut(s) | 224, 547, 760, 882 |
| MunI | CAATTG | 2 cut(s) | 751, 1185 |
| Mva1269I | GAATGC | 2 cut(s) | 998, 1181 |
| MvaI | CCWGG | 3 cut(s) | 224, 547, 882 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 536, 1196, 1205, 1279 |
| NciI | CCSGG | 1 cut(s) | 760 |
| NdeII | GATC | 5 cut(s) | 73, 154, 765, 797, 985 |
| NlaIII | CATG | 5 cut(s) | 68, 418, 617, 992, 1166 |
| NlaIV | GGNNCC | 6 cut(s) | 195, 228, 308, 368, 625, 733 |
| NmuCI | GTSAC | 1 cut(s) | 244 |
| NspI | RCATGY | 3 cut(s) | 68, 617, 1166 |
| OliI | CACNNNNGTG | 1 cut(s) | 86 |
| PagI | TCATGA | 2 cut(s) | 414, 988 |
| PaqCI | CACCTGC | 1 cut(s) | 323 |
| PciI | ACATGT | 1 cut(s) | 613 |
| PciSI | GCTCTTC | 1 cut(s) | 168 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 356 |
| PctI | GAATGC | 2 cut(s) | 998, 1181 |
| PdmI | GAANNNNTTC | 2 cut(s) | 435, 448 |
| PfeI | GAWTC | 4 cut(s) | 347, 662, 668, 873 |
| PflFI | GACNNNGTC | 1 cut(s) | 458 |
| PkrI | GCNGC | 3 cut(s) | 532, 1210, 1260 |
| PpuMI | RGGWCCY | 2 cut(s) | 193, 366 |
| PscI | ACATGT | 1 cut(s) | 613 |
| Psp124BI | GAGCTC | 3 cut(s) | 278, 339, 1275 |
| Psp5II | RGGWCCY | 2 cut(s) | 193, 366 |
| Psp6I | CCWGG | 3 cut(s) | 222, 545, 880 |
| PspGI | CCWGG | 3 cut(s) | 222, 545, 880 |
| PspN4I | GGNNCC | 6 cut(s) | 195, 228, 308, 368, 625, 733 |
| PspPI | GGNCC | 5 cut(s) | 193, 366, 599, 732, 1244 |
| PspPPI | RGGWCCY | 2 cut(s) | 193, 366 |
| PstI | CTGCAG | 1 cut(s) | 1270 |
| PsuI | RGATCY | 2 cut(s) | 73, 154 |
| PsyI | GACNNNGTC | 1 cut(s) | 458 |
| PvuII | CAGCTG | 1 cut(s) | 86 |
| RsaI | GTAC | 2 cut(s) | 757, 1123 |
| RsaNI | GTAC | 2 cut(s) | 756, 1122 |
| RseI | CAYNNNNRTG | 2 cut(s) | 86, 326 |
| SacI | GAGCTC | 3 cut(s) | 278, 339, 1275 |
| SapI | GCTCTTC | 1 cut(s) | 168 |
| SaqAI | TTAA | 1 cut(s) | 707 |
| SatI | GCNGC | 3 cut(s) | 531, 1209, 1259 |
| Sau3AI | GATC | 5 cut(s) | 73, 154, 765, 797, 985 |
| Sau96I | GGNCC | 5 cut(s) | 193, 366, 599, 732, 1244 |
| ScrFI | CCNGG | 4 cut(s) | 224, 547, 760, 882 |
| SduI | GDGCHC | 4 cut(s) | 278, 309, 339, 1275 |
| SfaNI | GCATC | 3 cut(s) | 675, 1012, 1186 |
| SfcI | CTRYAG | 2 cut(s) | 579, 1266 |
| SinI | GGWCC | 5 cut(s) | 193, 366, 599, 732, 1244 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 86, 326 |
| SmlI | CTYRAG | 1 cut(s) | 506 |
| SmoI | CTYRAG | 1 cut(s) | 506 |
| Sse9I | AATT | 8 cut(s) | 149, 649, 699, 751, 807, 1107, 1140, 1185 |
| SsiI | CCGC | 2 cut(s) | 1208, 1242 |
| SspI | AATATT | 1 cut(s) | 1311 |
| SspMI | CTAG | 4 cut(s) | 492, 596, 1004, 1205 |
| SstI | GAGCTC | 3 cut(s) | 278, 339, 1275 |
| StyD4I | CCNGG | 4 cut(s) | 222, 545, 758, 880 |
| TaaI | ACNGT | 4 cut(s) | 580, 868, 1029, 1137 |
| TaqI | TCGA | 6 cut(s) | 350, 462, 671, 796, 812, 984 |
| TasI | AATT | 8 cut(s) | 149, 649, 699, 751, 807, 1107, 1140, 1185 |
| TatI | WGTACW | 1 cut(s) | 1121 |
| TauI | GCSGC | 1 cut(s) | 1211 |
| TfiI | GAWTC | 4 cut(s) | 347, 662, 668, 873 |
| Tru1I | TTAA | 1 cut(s) | 707 |
| Tru9I | TTAA | 1 cut(s) | 707 |
| TscAI | CASTG | 7 cut(s) | 207, 249, 262, 547, 561, 1032, 1140 |
| TseFI | GTSAC | 1 cut(s) | 244 |
| TseI | GCWGC | 2 cut(s) | 530, 1258 |
| Tsp45I | GTSAC | 1 cut(s) | 244 |
| TspDTI | ATGAA | 7 cut(s) | 196, 431, 506, 576, 1003, 1005, 1303 |
| TspRI | CASTG | 7 cut(s) | 207, 249, 262, 547, 561, 1032, 1140 |
| Tth111I | GACNNNGTC | 1 cut(s) | 458 |
| VpaK11BI | GGWCC | 5 cut(s) | 193, 366, 599, 732, 1244 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 22 |
| XapI | RAATTY | 2 cut(s) | 699, 1107 |
| XceI | RCATGY | 3 cut(s) | 68, 617, 1166 |
| XmnI | GAANNNNTTC | 2 cut(s) | 435, 448 |
| XspI | CTAG | 4 cut(s) | 492, 596, 1004, 1205 |