Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0003631

Physical Location & Seq

Genomic Coordinates Forward (+)

19799012 .. 19801761

Gene Structure 2750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG209800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1353 bp

ATGCCTATGTTTCAGCCCTCAAAGAGGGATGGGGTTGTTGGGTTTGATGGTGGAGGAGATGGGCATGTTCTAGATCTGGACACAGCTGTGAAAGATGGGGTTTTGGGTGTTGGTGGTGTTGGTGGGGTTGTGGCAACTGGTGTTGGTGAGAAATTGGATCTGAGTAAGATGATTGAGGAGCTTGACTTGTCTGAGGTCCCTTCTGTGTTTATTTGCCCAATTTCTCTTGAGCCAATGCAAGACCCTGTGACCCTTTGCACTGGGCAAACCTATGAGAAGTCCAACATTCTCAAGTGGTTCAATTTGGGGCACCTCACCTGTCCAACCACAATGCAGGAGCTTTGGGACGATTCCGTGACCCCGAATAGGACCCTTTACCATCTAATCTACACCTGGTTTTCGCAGAAGTATCTGCTCATGAAGAAGAAGTCAGAAGATGTCCAGGGAAGGGCTGCAGAGCTTGTGGAGACGCTGAAGAAGGTGAAGGGTCAAGCTAGGGTGCAAGCCCTCAAGGAGTTGCATCAAGTTGTGGGGGCTCATGCCACTGCTAGGAAGACATTGATTGATAAAGGTGGGATTGCTGTAGTTTCGTCTCTGTTAGGTCCATTTACTTCACATGTTGTAGGTTCGATAGCCATTGCAATTCTAGTGAATTTGTCACTTGATTCAGAGTCCAGAATGAATTTGATGCAACCGGCAAAGATTTCTTTGATGGTGGACATTTTGAATGAAGGGTCAATTGAGACGAAAATCAATTGTACCCGGTTGATCAAAATGTTAATGGAGGAGAAGGATTTTCGATCAGAAATTGTTTCGAGCCATAGCCTCCTGGTTGGAATAATGAGGCTGGTTAAAGATAAGAGACATACAGTTGGAGTCTTGCCAGGACTGAGCCTCCTCAGAACAATATGCTTGCATGAGGAAGCGAGGGGCTTGATAGTGAGCATTGGAGCTGTACCGCAATTGGTTGAATGTTTGCCTTCTCTTGACCACGAATGTTTAGAATTAGCCCTTTTTGTATTGGATGCATTGTCATCTCTACCACAGGGAGTATTAGCGTTGAAGGATTGTTCGAAGACTATACCGAATATGGTGAGGGTTCTGATGAGAATTTCAGAGAGTTGTACTCAATATGCGTTGACAATCTTATCATCTATATGCAAACTTGCCCCTGAGGAATGTTCATCAATTGCCTTGGATGCCGGTCTAGCAGCAAAGCTCCTCCTCGTGATCCAGAGTTGTAGTGATCCTGTCTTGAAGCAGCAATCCTCAGAGCTGTTGAAGCTGTGTAGTCTAAACTATTCTGATACAATATTCATTTCCAAGTGCAAGCTTACAAGGACAATTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0033554 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0047484 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0050896 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071214 GO:0071470 GO:0071472 GO:0071704 GO:0080134 GO:0104004 GO:0140096 GO:1901000 GO:1901001 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

U-box

Protein Analysis

450

Amino Acids

48.98

Weight (kDa)

6.23

Isoelectric Point (pI)

43.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
U-box	PF04564	66 - 136	1e-13	U-box domain
ARM_PUB	PF25598	154 - 450	3.9e-81	Plant U-box protein ARM repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003631)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49810 AT5G65920 AT5G65920
fragaria_vesca	FvH4_1g18010 FvH4_1g18010 FvH4_1g18010 FvH4_2g32810
malus_domestica	MD08G1079800.v1.1 MD15G1066700.v1.1
prunus_persica	Prupe.1G420500_v2.0.a1 Prupe.6G218400_v2.0.a1
pyrus_communis	pycom08g06590 pycom15g06330
rosa_chinensis	RchiOBHm_Chr2g0108501 RchiOBHm_Chr6g0309891
rosa_laevigata	RLG00000010526 RLG00000017673
rosa_multiflora	Rmu_co8433595.1_g000001 Rmu_sc0000294.1_g000001 Rmu_sc0002372.1_g000052 Rmu_sc0009846.1_g000001
rosa_roxburghii	Rroxscaffold_2G00135090 Rroxscaffold_7G00159070
rosa_rugosa	Rorug02G0153700 Rorug06G0375700.1
rosa_samantha	Rh2AG202600 Rh2BG215500 Rh2CG206700 Rh2DG209800 Rh6AG489500 Rh6BG498900 Rh6CG503700 Rh6DG489900
rosa_wichuraiana	Rw2G016190 Rw6G042600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	309
AciI	CCGC	1 cut(s)	959
AclWI	GGATC	3 cut(s)	165, 1225, 1241
AcsI	RAATTY	3 cut(s)	652, 682, 1110
AcuI	CTGAAG	1 cut(s)	494
AfaI	GTAC	3 cut(s)	760, 957, 1126
AfiI	CCNNNNNNNGG	4 cut(s)	24, 366, 448, 549
AflIII	ACRYGT	1 cut(s)	616
AgsI	TTSAA	7 cut(s)	301, 727, 971, 1063, 1258, 1282, 1349
AjnI	CCWGG	4 cut(s)	392, 441, 828, 883
AleI	CACNNNNGTG	1 cut(s)	86
Alw26I	GTCTC	4 cut(s)	461, 597, 737, 856
AlwI	GGATC	3 cut(s)	165, 1225, 1241
ApeKI	GCWGC	3 cut(s)	452, 1211, 1261
ApoI	RAATTY	3 cut(s)	652, 682, 1110
AspS9I	GGNCC	3 cut(s)	196, 369, 602
AsuC2I	CCSGG	1 cut(s)	763
AsuHPI	GGTGA	4 cut(s)	158, 307, 493, 1105
AsuII	TTCGAA	1 cut(s)	1073
AvaII	GGWCC	3 cut(s)	196, 369, 602
AxyI	CCTNAGG	1 cut(s)	1173
BaeGI	GKGCMC	1 cut(s)	312
BanI	GGYRCC	1 cut(s)	309
BanII	GRGCYC	1 cut(s)	538
BauI	CACGAG	1 cut(s)	1226
BbsI	GAAGAC	2 cut(s)	560, 1082
BbvI	GCAGC	3 cut(s)	439, 1223, 1273
BccI	CCATC	6 cut(s)	23, 41, 53, 89, 387, 706
BciT130I	CCWGG	4 cut(s)	394, 443, 830, 885
BclI	TGATCA	1 cut(s)	768
BcnI	CCSGG	1 cut(s)	763
BcoDI	GTCTC	4 cut(s)	461, 597, 737, 856
BfaI	CTAG	5 cut(s)	71, 495, 549, 647, 1208
BfmI	CTRYAG	2 cut(s)	453, 582
BglII	AGATCT	1 cut(s)	73
BisI	GCNGC	3 cut(s)	453, 1212, 1262
BlsI	GCNGC	3 cut(s)	454, 1213, 1263
Bme1390I	CCNGG	5 cut(s)	394, 443, 763, 830, 885
Bme18I	GGWCC	3 cut(s)	196, 369, 602
BmgT120I	GGNCC	3 cut(s)	196, 369, 602
BmiI	GGNNCC	3 cut(s)	198, 311, 371
BmrFI	CCNGG	5 cut(s)	394, 443, 763, 830, 885
BmrI	ACTGGG	1 cut(s)	270
BmsI	GCATC	4 cut(s)	529, 678, 1015, 1189
BmuI	ACTGGG	1 cut(s)	270
BpiI	GAAGAC	2 cut(s)	560, 1082
BplI	GAGNNNNNCTC	2 cut(s)	1111, 1143
Bpu14I	TTCGAA	1 cut(s)	1073
BpuEI	CTTGAG	3 cut(s)	248, 275, 494
BpuMI	CCSGG	1 cut(s)	763
BsaJI	CCNNGG	2 cut(s)	442, 1194
BsaXI	ACNNNNNCTCC	2 cut(s)	879, 909
Bsc4I	CCNNNNNNNGG	4 cut(s)	24, 366, 448, 549
Bse118I	RCCGGY	2 cut(s)	694, 1202
Bse1I	ACTGG	2 cut(s)	142, 265
Bse21I	CCTNAGG	1 cut(s)	1173
Bse3DI	GCAATG	1 cut(s)	636
BseBI	CCWGG	4 cut(s)	394, 443, 830, 885
BseDI	CCNNGG	2 cut(s)	442, 1194
BseGI	GGATG	3 cut(s)	34, 1030, 1204
BseLI	CCNNNNNNNGG	4 cut(s)	24, 366, 448, 549
BseMI	GCAATG	1 cut(s)	636
BseMII	CTCAG	6 cut(s)	152, 183, 881, 913, 1164, 1284
BseNI	ACTGG	2 cut(s)	142, 265
BseRI	GAGGAG	6 cut(s)	69, 191, 800, 887, 1211, 1214
BseSI	GKGCMC	1 cut(s)	312
BseXI	GCAGC	3 cut(s)	439, 1223, 1273
BshNI	GGYRCC	1 cut(s)	309
BsiSI	CCGG	3 cut(s)	695, 763, 1203
BslFI	GGGAC	2 cut(s)	182, 359
BslI	CCNNNNNNNGG	4 cut(s)	24, 366, 448, 549
BsmAI	GTCTC	4 cut(s)	461, 597, 737, 856
BsmBI	CGTCTC	3 cut(s)	461, 597, 737
BsmFI	GGGAC	2 cut(s)	182, 359
Bsp119I	TTCGAA	1 cut(s)	1073
Bsp1286I	GDGCHC	2 cut(s)	312, 538
Bsp143I	GATC	6 cut(s)	73, 157, 768, 800, 1230, 1246
BspACI	CCGC	1 cut(s)	959
BspCNI	CTCAG	6 cut(s)	153, 184, 882, 912, 1165, 1283
BspHI	TCATGA	1 cut(s)	417
BspLI	GGNNCC	3 cut(s)	198, 311, 371
BspMAI	CTGCAG	1 cut(s)	457
BspPI	GGATC	3 cut(s)	165, 1225, 1241
BspT104I	TTCGAA	1 cut(s)	1073
BspT107I	GGYRCC	1 cut(s)	309
BsrDI	GCAATG	1 cut(s)	636
BsrFI	RCCGGY	2 cut(s)	694, 1202
BsrI	ACTGG	2 cut(s)	142, 265
BssAI	RCCGGY	2 cut(s)	694, 1202
BssECI	CCNNGG	2 cut(s)	442, 1194
BssMI	GATC	6 cut(s)	73, 157, 768, 800, 1230, 1246
BssSI	CACGAG	1 cut(s)	1226
BssT1I	CCWWGG	1 cut(s)	1194
Bst2BI	CACGAG	1 cut(s)	1226
Bst2UI	CCWGG	4 cut(s)	394, 443, 830, 885
Bst4CI	ACNGT	1 cut(s)	871
BstBI	TTCGAA	1 cut(s)	1073
BstC8I	GCNNGC	3 cut(s)	504, 914, 1331
BstDEI	CTNAG	6 cut(s)	161, 192, 890, 899, 1173, 1270
BstENI	CCTNNNNNAGG	1 cut(s)	22
BstF5I	GGATG	3 cut(s)	34, 1030, 1204
BstKTI	GATC	6 cut(s)	76, 160, 771, 803, 1233, 1249
BstMAI	GTCTC	4 cut(s)	461, 597, 737, 856
BstMBI	GATC	6 cut(s)	73, 157, 768, 800, 1230, 1246
BstMWI	GCNNNNNNNGC	3 cut(s)	1199, 1208, 1282
BstNI	CCWGG	4 cut(s)	394, 443, 830, 885
BstNSI	RCATGY	2 cut(s)	68, 620
BstSCI	CCNGG	5 cut(s)	392, 441, 761, 828, 883
BstSFI	CTRYAG	2 cut(s)	453, 582
BstSLI	GKGCMC	1 cut(s)	312
BstV1I	GCAGC	3 cut(s)	439, 1223, 1273
BstV2I	GAAGAC	2 cut(s)	560, 1082
BstX2I	RGATCY	2 cut(s)	73, 157
BstYI	RGATCY	2 cut(s)	73, 157
Bsu36I	CCTNAGG	1 cut(s)	1173
BtsCI	GGATG	3 cut(s)	34, 1030, 1204
BtsI	GCAGTG	1 cut(s)	543
BtsIMutI	CAGTG	2 cut(s)	258, 543
Cac8I	GCNNGC	3 cut(s)	504, 914, 1331
CciI	TCATGA	1 cut(s)	417
Cfr10I	RCCGGY	2 cut(s)	694, 1202
Cfr13I	GGNCC	3 cut(s)	196, 369, 602
CseI	GACGC	1 cut(s)	478
CsiI	ACCWGGT	1 cut(s)	392
Csp6I	GTAC	3 cut(s)	759, 956, 1125
CviAII	CATG	5 cut(s)	65, 418, 539, 617, 917
CviQI	GTAC	3 cut(s)	759, 956, 1125
DdeI	CTNAG	6 cut(s)	161, 192, 890, 899, 1173, 1270
DpnI	GATC	6 cut(s)	75, 159, 770, 802, 1232, 1248
DpnII	GATC	6 cut(s)	73, 157, 768, 800, 1230, 1246
Eco130I	CCWWGG	1 cut(s)	1194
Eco24I	GRGCYC	1 cut(s)	538
Eco47I	GGWCC	3 cut(s)	196, 369, 602
Eco57I	CTGAAG	1 cut(s)	494
Eco81I	CCTNAGG	1 cut(s)	1173
EcoNI	CCTNNNNNAGG	1 cut(s)	22
EcoO109I	RGGNCCY	2 cut(s)	196, 369
EcoRII	CCWGG	4 cut(s)	392, 441, 828, 883
EcoT14I	CCWWGG	1 cut(s)	1194
EcoT22I	ATGCAT	1 cut(s)	1030
EcoT38I	GRGCYC	1 cut(s)	538
ErhI	CCWWGG	1 cut(s)	1194
Esp3I	CGTCTC	3 cut(s)	461, 597, 737
FaeI	CATG	5 cut(s)	68, 421, 542, 620, 920
FaqI	GGGAC	2 cut(s)	182, 359
FatI	CATG	5 cut(s)	64, 417, 538, 616, 916
FbaI	TGATCA	1 cut(s)	768
Fnu4HI	GCNGC	3 cut(s)	453, 1212, 1262
FokI	GGATG	3 cut(s)	41, 1037, 1211
FriOI	GRGCYC	1 cut(s)	538
Fsp4HI	GCNGC	3 cut(s)	453, 1212, 1262
FspBI	CTAG	5 cut(s)	71, 495, 549, 647, 1208
GluI	GCNGC	3 cut(s)	453, 1212, 1262
HapII	CCGG	3 cut(s)	695, 763, 1203
HgaI	GACGC	1 cut(s)	478
Hin1II	CATG	5 cut(s)	68, 421, 542, 620, 920
HincII	GTYRAC	1 cut(s)	1140
HindII	GTYRAC	1 cut(s)	1140
HindIII	AAGCTT	1 cut(s)	1331
HinfI	GANTC	4 cut(s)	350, 665, 671, 876
HpaII	CCGG	3 cut(s)	695, 763, 1203
HphI	GGTGA	4 cut(s)	158, 307, 493, 1105
Hpy166II	GTNNAC	2 cut(s)	718, 1140
Hpy188III	TCNNGA	9 cut(s)	71, 77, 227, 418, 675, 986, 1228, 1234, 1255
Hpy8I	GTNNAC	2 cut(s)	718, 1140
HpyAV	CCTTC	8 cut(s)	210, 441, 472, 478, 725, 784, 990, 1057
HpyCH4III	ACNGT	1 cut(s)	871
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1199, 1208, 1282
HpyF3I	CTNAG	6 cut(s)	161, 192, 890, 899, 1173, 1270
Hsp92II	CATG	5 cut(s)	68, 421, 542, 620, 920
Ksp22I	TGATCA	1 cut(s)	768
Kzo9I	GATC	6 cut(s)	73, 157, 768, 800, 1230, 1246
LmnI	GCTCC	4 cut(s)	178, 337, 950, 1224
Lsp1109I	GCAGC	3 cut(s)	439, 1223, 1273
LweI	GCATC	4 cut(s)	529, 678, 1015, 1189
MabI	ACCWGGT	1 cut(s)	392
MaeI	CTAG	5 cut(s)	71, 495, 549, 647, 1208
MaeIII	GTNAC	3 cut(s)	247, 355, 657
MalI	GATC	6 cut(s)	75, 159, 770, 802, 1232, 1248
MboI	GATC	6 cut(s)	73, 157, 768, 800, 1230, 1246
MboII	GAAGA	6 cut(s)	433, 436, 446, 487, 565, 1087
MfeI	CAATTG	4 cut(s)	738, 754, 962, 1188
MflI	RGATCY	2 cut(s)	73, 157
MhlI	GDGCHC	2 cut(s)	312, 538
MlyI	GAGTC	2 cut(s)	680, 885
MmeI	TCCRAC	4 cut(s)	306, 347, 814, 853
Mph1103I	ATGCAT	1 cut(s)	1030
MseI	TTAA	2 cut(s)	779, 852
MslI	CAYNNNNRTG	2 cut(s)	86, 1156
MspA1I	CMGCKG	1 cut(s)	86
MspI	CCGG	3 cut(s)	695, 763, 1203
MspR9I	CCNGG	5 cut(s)	394, 443, 763, 830, 885
MunI	CAATTG	4 cut(s)	738, 754, 962, 1188
MvaI	CCWGG	4 cut(s)	394, 443, 830, 885
MwoI	GCNNNNNNNGC	3 cut(s)	1199, 1208, 1282
NciI	CCSGG	1 cut(s)	763
NdeII	GATC	6 cut(s)	73, 157, 768, 800, 1230, 1246
NlaIII	CATG	5 cut(s)	68, 421, 542, 620, 920
NlaIV	GGNNCC	3 cut(s)	198, 311, 371
NmuCI	GTSAC	3 cut(s)	247, 355, 657
NsiI	ATGCAT	1 cut(s)	1030
NspI	RCATGY	2 cut(s)	68, 620
NspV	TTCGAA	1 cut(s)	1073
OliI	CACNNNNGTG	1 cut(s)	86
PagI	TCATGA	1 cut(s)	417
PciI	ACATGT	1 cut(s)	616
PfeI	GAWTC	2 cut(s)	350, 665
PkrI	GCNGC	3 cut(s)	454, 1213, 1263
PleI	GAGTC	2 cut(s)	679, 884
PpsI	GAGTC	2 cut(s)	679, 884
PpuMI	RGGWCCY	2 cut(s)	196, 369
PscI	ACATGT	1 cut(s)	616
Psp5II	RGGWCCY	2 cut(s)	196, 369
Psp6I	CCWGG	4 cut(s)	392, 441, 828, 883
PspGI	CCWGG	4 cut(s)	392, 441, 828, 883
PspN4I	GGNNCC	3 cut(s)	198, 311, 371
PspPI	GGNCC	3 cut(s)	196, 369, 602
PspPPI	RGGWCCY	2 cut(s)	196, 369
PstI	CTGCAG	1 cut(s)	457
PsuI	RGATCY	2 cut(s)	73, 157
PvuII	CAGCTG	1 cut(s)	86
RsaI	GTAC	3 cut(s)	760, 957, 1126
RsaNI	GTAC	3 cut(s)	759, 956, 1125
RseI	CAYNNNNRTG	2 cut(s)	86, 1156
SaqAI	TTAA	2 cut(s)	779, 852
SatI	GCNGC	3 cut(s)	453, 1212, 1262
Sau3AI	GATC	6 cut(s)	73, 157, 768, 800, 1230, 1246
Sau96I	GGNCC	3 cut(s)	196, 369, 602
SchI	GAGTC	2 cut(s)	680, 885
ScrFI	CCNGG	5 cut(s)	394, 443, 763, 830, 885
SduI	GDGCHC	2 cut(s)	312, 538
SexAI	ACCWGGT	1 cut(s)	392
SfaNI	GCATC	4 cut(s)	529, 678, 1015, 1189
SfcI	CTRYAG	2 cut(s)	453, 582
SfuI	TTCGAA	1 cut(s)	1073
SinI	GGWCC	3 cut(s)	196, 369, 602
SmiMI	CAYNNNNRTG	2 cut(s)	86, 1156
SmlI	CTYRAG	3 cut(s)	227, 290, 509
SmoI	CTYRAG	3 cut(s)	227, 290, 509
SsiI	CCGC	1 cut(s)	959
SspI	AATATT	1 cut(s)	1314
SspMI	CTAG	5 cut(s)	71, 495, 549, 647, 1208
StyD4I	CCNGG	5 cut(s)	392, 441, 761, 828, 883
StyI	CCWWGG	1 cut(s)	1194
TaaI	ACNGT	1 cut(s)	871
TaqI	TCGA	4 cut(s)	629, 799, 815, 1073
TatI	WGTACW	1 cut(s)	1124
TfiI	GAWTC	2 cut(s)	350, 665
Tru1I	TTAA	2 cut(s)	779, 852
Tru9I	TTAA	2 cut(s)	779, 852
TscAI	CASTG	2 cut(s)	265, 550
TseFI	GTSAC	3 cut(s)	247, 355, 657
TseI	GCWGC	3 cut(s)	452, 1211, 1261
Tsp45I	GTSAC	3 cut(s)	247, 355, 657
TspDTI	ATGAA	5 cut(s)	434, 695, 744, 1173, 1306
TspGWI	ACGGA	1 cut(s)	343
TspRI	CASTG	2 cut(s)	265, 550
VpaK11BI	GGWCC	3 cut(s)	196, 369, 602
XagI	CCTNNNNNAGG	1 cut(s)	22
XapI	RAATTY	3 cut(s)	652, 682, 1110
XbaI	TCTAGA	1 cut(s)	70
XceI	RCATGY	2 cut(s)	68, 620
XspI	CTAG	5 cut(s)	71, 495, 549, 647, 1208
Zsp2I	ATGCAT	1 cut(s)	1030

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.