Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0003631

Physical Location & Seq

Genomic Coordinates Forward (+)

10465976 .. 10468574

Gene Structure 2599 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g18010.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1365 bp

ATGCCTATGTTTGAGCCCTCAAACAGGGATGGGATTGTTGGGTTTGATGGTGGTGGAGATGGGCATGTTCTAGATTTGGACACAGCTGTCAAAGATGGGGTTTTGGGTGGTGGTGGTGTTGTTAGTGTTGGTGGGGTTGTGGGAACTGGTGGTGGTGGTGAGAAATTGGATCTGAGAATGATGATTGAGGAGCTTGACTTGTCTGAGGTACCTTCTGTGTTTATCTGCCCAATTTCTCTTGAGCCAATGCAAGACCCTGTGACCCTTTGCACTGGGCAGACCTATGAGAAGTCCAACATTCTCAAGTGGTTCAATTTGGGGCATTTCACCTGTCCAACCACAATGCAGGAGCTTTGGGATGATACCGTGACCCCTAATAGGACCCTTCATCATCTAATCTACACATGGTTTTCTCAGAAGTATCTGCTCATGAAGAAGAAGTCAGAAGATGTTCAGGGAAGGGCTGCAGAGCTTGTGGAGATGCTGAAGACTGTGAAGGGTCAAGCTAGGGTGCAAGCCCTCAAGGAATTGCGTCAAGTTGTGGCAGTTCATGCCACTGCTAGGCAGACATTGATCGATAAAGGTGGGATTGCTGTAGTTTCGTCTCTGCTTGGTCCATTTACTTCACATGTTATAGGTTCGGTAGCCATTGCAATTCTTGTGAATTTGACACTTGATTCGGAGTCCAGAATGAGTTTGATGCAACCAGCTAAGATTTCGTTGATGGTGGACATTTTGAATGAGGGGTCAATTGAGACAAAAATCAATTGTACCCGGTTGATCAAAATGTTAATGGAGGAGAAGGATTTTCGATCAGAAATTGTTTCGAGCCATAGCCTCCTGGTTGGAATAATGAGGTTGGTTAAAGATAAGAGACATACAGTTGGAGTCTTGCCAGGACTGAGCCTCCTCAGAACAATATGCTTGCATGAGGAAGCGAGGGGCTTGATAGTGAGCATTGGAGCTGTACCGCAATTGGTTGAATGTTTGCTTTCCCTTGACAATGAATGTTTAGAATTAGCCCTTTTCATCTTGGATGCATTGTCGTCTCGACCAGAGGGAGTATTATCATTGAAGGATTGTTCGAAGACCATACCAAATATGGTGAGCCTTCTGATGAGAATTTCAGAGAGTTGTACTCAATATGCATTGTCAATCTTATTGTCTATATGCAAACTTGCCCCTGAGGAATGCTCATCAATTGCCCTGGATGCCGGTCTGGCAGCAAAGCTCCTCCTTGTGATCCAGAGTTGTAGTGATCCAGTCTTAAAGCAGCAATCCGCAGAGCTATTGAAGCTCTGTAGTCTAAACTACTCTGATACAATATTCATTTCCAAGTGCAAGCTTTCAAGGACAATTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0033554 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0047484 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0050896 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071214 GO:0071470 GO:0071472 GO:0071704 GO:0080134 GO:0104004 GO:0140096 GO:1901000 GO:1901001 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

U-box

Protein Analysis

455

Amino Acids

49.37

Weight (kDa)

5.68

Isoelectric Point (pI)

44.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
U-box	PF04564	70 - 140	4e-14	U-box domain
ARM_PUB	PF25598	158 - 454	3.5e-79	Plant U-box protein ARM repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003631)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49810 AT5G65920 AT5G65920
fragaria_vesca	FvH4_1g18010 FvH4_1g18010 FvH4_1g18010 FvH4_2g32810
malus_domestica	MD08G1079800.v1.1 MD15G1066700.v1.1
prunus_persica	Prupe.1G420500_v2.0.a1 Prupe.6G218400_v2.0.a1
pyrus_communis	pycom08g06590 pycom15g06330
rosa_chinensis	RchiOBHm_Chr2g0108501 RchiOBHm_Chr6g0309891
rosa_laevigata	RLG00000010526 RLG00000017673
rosa_multiflora	Rmu_co8433595.1_g000001 Rmu_sc0000294.1_g000001 Rmu_sc0002372.1_g000052 Rmu_sc0009846.1_g000001
rosa_roxburghii	Rroxscaffold_2G00135090 Rroxscaffold_7G00159070
rosa_rugosa	Rorug02G0153700 Rorug06G0375700.1
rosa_samantha	Rh2AG202600 Rh2BG215500 Rh2CG206700 Rh2DG209800 Rh6AG489500 Rh6BG498900 Rh6CG503700 Rh6DG489900
rosa_wichuraiana	Rw2G016190 Rw6G042600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	86
Acc65I	GGTACC	1 cut(s)	208
AccB1I	GGYRCC	1 cut(s)	208
AciI	CCGC	2 cut(s)	971, 1281
AclWI	GGATC	3 cut(s)	177, 1237, 1253
AcsI	RAATTY	2 cut(s)	664, 1122
AcuI	CTGAAG	1 cut(s)	506
AfaI	GTAC	4 cut(s)	210, 772, 969, 1138
AfiI	CCNNNNNNNGG	3 cut(s)	24, 378, 561
AflIII	ACRYGT	1 cut(s)	628
AgsI	TTSAA	7 cut(s)	313, 739, 983, 1075, 1294, 1350, 1361
AjnI	CCWGG	3 cut(s)	840, 895, 1206
Alw26I	GTCTC	4 cut(s)	609, 749, 868, 1053
AlwI	GGATC	3 cut(s)	177, 1237, 1253
ApeKI	GCWGC	3 cut(s)	464, 1223, 1273
ApoI	RAATTY	2 cut(s)	664, 1122
ArsI	GACNNNNNNTTYG	2 cut(s)	661, 693
Asp700I	GAANNNNTTC	1 cut(s)	450
Asp718I	GGTACC	1 cut(s)	208
AspS9I	GGNCC	2 cut(s)	381, 614
AsuC2I	CCSGG	1 cut(s)	775
AsuHPI	GGTGA	3 cut(s)	170, 319, 1117
AsuII	TTCGAA	1 cut(s)	1085
AvaII	GGWCC	2 cut(s)	381, 614
AxyI	CCTNAGG	1 cut(s)	1185
BanI	GGYRCC	1 cut(s)	208
BanII	GRGCYC	1 cut(s)	18
BbsI	GAAGAC	2 cut(s)	494, 1094
BbvI	GCAGC	3 cut(s)	451, 1235, 1285
BccI	CCATC	5 cut(s)	23, 41, 53, 89, 718
BciT130I	CCWGG	3 cut(s)	842, 897, 1208
BclI	TGATCA	1 cut(s)	780
BcnI	CCSGG	1 cut(s)	775
BcoDI	GTCTC	4 cut(s)	609, 749, 868, 1053
BfaI	CTAG	3 cut(s)	71, 507, 561
BfmI	CTRYAG	3 cut(s)	465, 594, 1300
BglI	GCCNNNNNGGC	1 cut(s)	1220
BisI	GCNGC	3 cut(s)	465, 1224, 1274
BlsI	GCNGC	3 cut(s)	466, 1225, 1275
Bme1390I	CCNGG	4 cut(s)	775, 842, 897, 1208
Bme18I	GGWCC	2 cut(s)	381, 614
BmgT120I	GGNCC	2 cut(s)	381, 614
BmiI	GGNNCC	2 cut(s)	210, 383
BmrFI	CCNGG	4 cut(s)	775, 842, 897, 1208
BmrI	ACTGGG	1 cut(s)	282
BmsI	GCATC	4 cut(s)	471, 690, 1027, 1201
BmuI	ACTGGG	1 cut(s)	282
BpiI	GAAGAC	2 cut(s)	494, 1094
BplI	GAGNNNNNCTC	4 cut(s)	1123, 1155, 1178, 1210
Bpu14I	TTCGAA	1 cut(s)	1085
BpuEI	CTTGAG	3 cut(s)	260, 287, 506
BpuMI	CCSGG	1 cut(s)	775
Bsa29I	ATCGAT	1 cut(s)	576
BsaJI	CCNNGG	1 cut(s)	1206
BsaXI	ACNNNNNCTCC	2 cut(s)	891, 921
Bsc4I	CCNNNNNNNGG	3 cut(s)	24, 378, 561
Bse118I	RCCGGY	1 cut(s)	1214
Bse1I	ACTGG	3 cut(s)	151, 277, 1262
Bse21I	CCTNAGG	1 cut(s)	1185
Bse3DI	GCAATG	1 cut(s)	648
BseBI	CCWGG	3 cut(s)	842, 897, 1208
BseCI	ATCGAT	1 cut(s)	576
BseDI	CCNNGG	1 cut(s)	1206
BseGI	GGATG	4 cut(s)	34, 364, 1042, 1216
BseLI	CCNNNNNNNGG	3 cut(s)	24, 378, 561
BseMI	GCAATG	1 cut(s)	648
BseMII	CTCAG	6 cut(s)	164, 195, 428, 893, 925, 1176
BseNI	ACTGG	3 cut(s)	151, 277, 1262
BseRI	GAGGAG	4 cut(s)	203, 812, 899, 1223
BseXI	GCAGC	3 cut(s)	451, 1235, 1285
BshNI	GGYRCC	1 cut(s)	208
BshVI	ATCGAT	1 cut(s)	576
BsiSI	CCGG	2 cut(s)	775, 1215
BslI	CCNNNNNNNGG	3 cut(s)	24, 378, 561
BsmAI	GTCTC	4 cut(s)	609, 749, 868, 1053
BsmBI	CGTCTC	2 cut(s)	609, 1053
BsmI	GAATGC	1 cut(s)	1196
Bsp119I	TTCGAA	1 cut(s)	1085
Bsp1286I	GDGCHC	1 cut(s)	18
Bsp143I	GATC	6 cut(s)	169, 573, 780, 812, 1242, 1258
BspACI	CCGC	2 cut(s)	971, 1281
BspCNI	CTCAG	6 cut(s)	165, 196, 427, 894, 924, 1177
BspDI	ATCGAT	1 cut(s)	576
BspHI	TCATGA	1 cut(s)	429
BspLI	GGNNCC	2 cut(s)	210, 383
BspMAI	CTGCAG	1 cut(s)	469
BspPI	GGATC	3 cut(s)	177, 1237, 1253
BspT104I	TTCGAA	1 cut(s)	1085
BspT107I	GGYRCC	1 cut(s)	208
BsrDI	GCAATG	1 cut(s)	648
BsrFI	RCCGGY	1 cut(s)	1214
BsrI	ACTGG	3 cut(s)	151, 277, 1262
BssAI	RCCGGY	1 cut(s)	1214
BssECI	CCNNGG	1 cut(s)	1206
BssMI	GATC	6 cut(s)	169, 573, 780, 812, 1242, 1258
Bst2UI	CCWGG	3 cut(s)	842, 897, 1208
Bst4CI	ACNGT	3 cut(s)	367, 493, 883
BstAPI	GCANNNNNTGC	1 cut(s)	551
BstBI	TTCGAA	1 cut(s)	1085
BstC8I	GCNNGC	3 cut(s)	516, 926, 1343
BstDEI	CTNAG	7 cut(s)	173, 204, 414, 711, 902, 911, 1185
BstENI	CCTNNNNNAGG	1 cut(s)	22
BstF5I	GGATG	4 cut(s)	34, 364, 1042, 1216
BstKTI	GATC	6 cut(s)	172, 576, 783, 815, 1245, 1261
BstMAI	GTCTC	4 cut(s)	609, 749, 868, 1053
BstMBI	GATC	6 cut(s)	169, 573, 780, 812, 1242, 1258
BstMWI	GCNNNNNNNGC	4 cut(s)	551, 1211, 1220, 1294
BstNI	CCWGG	3 cut(s)	842, 897, 1208
BstNSI	RCATGY	2 cut(s)	68, 632
BstSCI	CCNGG	4 cut(s)	773, 840, 895, 1206
BstSFI	CTRYAG	3 cut(s)	465, 594, 1300
BstV1I	GCAGC	3 cut(s)	451, 1235, 1285
BstV2I	GAAGAC	2 cut(s)	494, 1094
BstX2I	RGATCY	1 cut(s)	169
BstYI	RGATCY	1 cut(s)	169
Bsu15I	ATCGAT	1 cut(s)	576
Bsu36I	CCTNAGG	1 cut(s)	1185
BsuTUI	ATCGAT	1 cut(s)	576
BtsCI	GGATG	4 cut(s)	34, 364, 1042, 1216
BtsI	GCAGTG	1 cut(s)	555
BtsIMutI	CAGTG	2 cut(s)	270, 555
Cac8I	GCNNGC	3 cut(s)	516, 926, 1343
CciI	TCATGA	1 cut(s)	429
Cfr10I	RCCGGY	1 cut(s)	1214
Cfr13I	GGNCC	2 cut(s)	381, 614
ClaI	ATCGAT	1 cut(s)	576
CseI	GACGC	1 cut(s)	521
Csp6I	GTAC	4 cut(s)	209, 771, 968, 1137
CviAII	CATG	6 cut(s)	65, 405, 430, 551, 629, 929
CviQI	GTAC	4 cut(s)	209, 771, 968, 1137
DdeI	CTNAG	7 cut(s)	173, 204, 414, 711, 902, 911, 1185
DpnI	GATC	6 cut(s)	171, 575, 782, 814, 1244, 1260
DpnII	GATC	6 cut(s)	169, 573, 780, 812, 1242, 1258
DrdI	GACNNNNNNGTC	1 cut(s)	86
DseDI	GACNNNNNNGTC	1 cut(s)	86
Eco24I	GRGCYC	1 cut(s)	18
Eco47I	GGWCC	2 cut(s)	381, 614
Eco57I	CTGAAG	1 cut(s)	506
Eco81I	CCTNAGG	1 cut(s)	1185
EcoNI	CCTNNNNNAGG	1 cut(s)	22
EcoO109I	RGGNCCY	1 cut(s)	381
EcoRII	CCWGG	3 cut(s)	840, 895, 1206
EcoT22I	ATGCAT	2 cut(s)	1042, 1150
EcoT38I	GRGCYC	1 cut(s)	18
Esp3I	CGTCTC	2 cut(s)	609, 1053
FaeI	CATG	6 cut(s)	68, 408, 433, 554, 632, 932
FatI	CATG	6 cut(s)	64, 404, 429, 550, 628, 928
FbaI	TGATCA	1 cut(s)	780
Fnu4HI	GCNGC	3 cut(s)	465, 1224, 1274
FokI	GGATG	4 cut(s)	41, 371, 1049, 1223
FriOI	GRGCYC	1 cut(s)	18
Fsp4HI	GCNGC	3 cut(s)	465, 1224, 1274
FspBI	CTAG	3 cut(s)	71, 507, 561
GluI	GCNGC	3 cut(s)	465, 1224, 1274
HapII	CCGG	2 cut(s)	775, 1215
HgaI	GACGC	1 cut(s)	521
Hin1II	CATG	6 cut(s)	68, 408, 433, 554, 632, 932
HindIII	AAGCTT	1 cut(s)	1343
HinfI	GANTC	3 cut(s)	677, 683, 888
HpaII	CCGG	2 cut(s)	775, 1215
HphI	GGTGA	3 cut(s)	170, 319, 1117
Hpy166II	GTNNAC	1 cut(s)	730
Hpy188III	TCNNGA	6 cut(s)	71, 239, 430, 687, 1050, 1246
Hpy8I	GTNNAC	1 cut(s)	730
HpyAV	CCTTC	7 cut(s)	222, 395, 453, 490, 796, 1069, 1121
HpyCH4III	ACNGT	3 cut(s)	367, 493, 883
HpyF10VI	GCNNNNNNNGC	4 cut(s)	551, 1211, 1220, 1294
HpyF3I	CTNAG	7 cut(s)	173, 204, 414, 711, 902, 911, 1185
Hsp92II	CATG	6 cut(s)	68, 408, 433, 554, 632, 932
KpnI	GGTACC	1 cut(s)	212
Ksp22I	TGATCA	1 cut(s)	780
Kzo9I	GATC	6 cut(s)	169, 573, 780, 812, 1242, 1258
LmnI	GCTCC	4 cut(s)	190, 349, 962, 1236
Lsp1109I	GCAGC	3 cut(s)	451, 1235, 1285
LweI	GCATC	4 cut(s)	471, 690, 1027, 1201
MaeI	CTAG	3 cut(s)	71, 507, 561
MaeIII	GTNAC	2 cut(s)	259, 367
MalI	GATC	6 cut(s)	171, 575, 782, 814, 1244, 1260
MboI	GATC	6 cut(s)	169, 573, 780, 812, 1242, 1258
MboII	GAAGA	5 cut(s)	445, 448, 458, 499, 1099
MfeI	CAATTG	4 cut(s)	750, 766, 974, 1200
MflI	RGATCY	1 cut(s)	169
MhlI	GDGCHC	1 cut(s)	18
MlyI	GAGTC	2 cut(s)	692, 897
MmeI	TCCRAC	4 cut(s)	318, 359, 826, 865
Mph1103I	ATGCAT	2 cut(s)	1042, 1150
MroXI	GAANNNNTTC	1 cut(s)	450
MseI	TTAA	3 cut(s)	791, 864, 1268
MspA1I	CMGCKG	1 cut(s)	86
MspI	CCGG	2 cut(s)	775, 1215
MspR9I	CCNGG	4 cut(s)	775, 842, 897, 1208
MunI	CAATTG	4 cut(s)	750, 766, 974, 1200
Mva1269I	GAATGC	1 cut(s)	1196
MvaI	CCWGG	3 cut(s)	842, 897, 1208
MwoI	GCNNNNNNNGC	4 cut(s)	551, 1211, 1220, 1294
NciI	CCSGG	1 cut(s)	775
NdeII	GATC	6 cut(s)	169, 573, 780, 812, 1242, 1258
NlaIII	CATG	6 cut(s)	68, 408, 433, 554, 632, 932
NlaIV	GGNNCC	2 cut(s)	210, 383
NmuCI	GTSAC	2 cut(s)	259, 367
NsiI	ATGCAT	2 cut(s)	1042, 1150
NspI	RCATGY	2 cut(s)	68, 632
NspV	TTCGAA	1 cut(s)	1085
PagI	TCATGA	1 cut(s)	429
PciI	ACATGT	1 cut(s)	628
PctI	GAATGC	1 cut(s)	1196
PdmI	GAANNNNTTC	1 cut(s)	450
PfeI	GAWTC	1 cut(s)	677
PkrI	GCNGC	3 cut(s)	466, 1225, 1275
PleI	GAGTC	2 cut(s)	691, 896
PpsI	GAGTC	2 cut(s)	691, 896
PpuMI	RGGWCCY	1 cut(s)	381
PscI	ACATGT	1 cut(s)	628
Psp5II	RGGWCCY	1 cut(s)	381
Psp6I	CCWGG	3 cut(s)	840, 895, 1206
PspGI	CCWGG	3 cut(s)	840, 895, 1206
PspN4I	GGNNCC	2 cut(s)	210, 383
PspPI	GGNCC	2 cut(s)	381, 614
PspPPI	RGGWCCY	1 cut(s)	381
PstI	CTGCAG	1 cut(s)	469
PsuI	RGATCY	1 cut(s)	169
PvuII	CAGCTG	1 cut(s)	86
RsaI	GTAC	4 cut(s)	210, 772, 969, 1138
RsaNI	GTAC	4 cut(s)	209, 771, 968, 1137
SaqAI	TTAA	3 cut(s)	791, 864, 1268
SatI	GCNGC	3 cut(s)	465, 1224, 1274
Sau3AI	GATC	6 cut(s)	169, 573, 780, 812, 1242, 1258
Sau96I	GGNCC	2 cut(s)	381, 614
SchI	GAGTC	2 cut(s)	692, 897
ScrFI	CCNGG	4 cut(s)	775, 842, 897, 1208
SduI	GDGCHC	1 cut(s)	18
SfaNI	GCATC	4 cut(s)	471, 690, 1027, 1201
SfcI	CTRYAG	3 cut(s)	465, 594, 1300
SfuI	TTCGAA	1 cut(s)	1085
SinI	GGWCC	2 cut(s)	381, 614
SmlI	CTYRAG	3 cut(s)	239, 302, 521
SmoI	CTYRAG	3 cut(s)	239, 302, 521
SsiI	CCGC	2 cut(s)	971, 1281
SspI	AATATT	1 cut(s)	1326
SspMI	CTAG	3 cut(s)	71, 507, 561
StyD4I	CCNGG	4 cut(s)	773, 840, 895, 1206
TaaI	ACNGT	3 cut(s)	367, 493, 883
TaqI	TCGA	5 cut(s)	576, 811, 827, 1051, 1085
TatI	WGTACW	1 cut(s)	1136
TfiI	GAWTC	1 cut(s)	677
Tru1I	TTAA	3 cut(s)	791, 864, 1268
Tru9I	TTAA	3 cut(s)	791, 864, 1268
TscAI	CASTG	2 cut(s)	277, 562
TseFI	GTSAC	2 cut(s)	259, 367
TseI	GCWGC	3 cut(s)	464, 1223, 1273
Tsp45I	GTSAC	2 cut(s)	259, 367
TspDTI	ATGAA	6 cut(s)	377, 446, 539, 1018, 1020, 1318
TspRI	CASTG	2 cut(s)	277, 562
VpaK11BI	GGWCC	2 cut(s)	381, 614
XagI	CCTNNNNNAGG	1 cut(s)	22
XapI	RAATTY	2 cut(s)	664, 1122
XbaI	TCTAGA	1 cut(s)	70
XceI	RCATGY	2 cut(s)	68, 632
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1099
XmnI	GAANNNNTTC	1 cut(s)	450
XspI	CTAG	3 cut(s)	71, 507, 561
Zsp2I	ATGCAT	2 cut(s)	1042, 1150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.