Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0003631

Physical Location & Seq

Genomic Coordinates Forward (+)

19694011 .. 19696481

Gene Structure 2471 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017673

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1362 bp

ATGCCTATGTTTCAGCCCTCAAAGAGGGATGGGGTTGCTGGGTTTGATGGTGGAGGAGATGGGCATGTTCTAGATCTGGACACAGCTGTGAAAGATGGGGTTCTGGGTGGTGGTGGTGGTGTTGGTGTTGGTGGAGTTGTGGCAACTGGTGTTGGTGAGCAATTGGATCTGAGGAAGATGATTGAGGAGCTTGACTTGTCTGAGGTTCCTTCTGTGTTTATTTGCCCAATTTCTCTTGAGCCAATGCAAGACCCTGTGACCCTTTGCACTGGGCAAACCTATGAGAAGTCCAACATTCTCAAGTGGTTCAATTTGGGGCACCTCACCTGTCCAACCACAATGCAGGAGCTTTGGGATGATTCCGTGACCCCGAATAGGACCCTTTACCATCTAATCTACACCTGGTTTTCGCAGAAGTATCTGCTCATGAAGAAGAAGTCGGAAGATGTTCAGGGAAGGGCTGCAGAGCTTGTGGAGACGCTGAAGAAGGTGAAGGGTCAAGCTAGGGTGCAAGCCCTCAAGGAGTTGCATCACGTTGTGGGGGCTCATGTCACTGCTAGGAAGACATTGATTGATAAAGGTGGGATTGCTGTAGTTTCGTCTCTGTTAGGTCCATTTACTTCACATGTTGTAGGTTCGATAGCCATTGCAATTCTTGTGAATTTGTCACTTGATTCGGAGTCCAGAACGAATTTGATGCAACCGGCAAAGATTTCTTTGATGGTGGACATTTTGAACGAGGGGTCAATTGAGACGAAAATCAATTGTACCCAGTTGATCAAAATGTTAATGGAGGAGAAGGATTTTCGATCAGAAATTGTTTCGAGCCATAGCCTCCTGGTTGGAATAATGAGGCTGGTTAAAGATAAGAGACATACAGTTGGAGTCTTGCCAGGACTGAGCCTCCTCAGAACAATATGCTTGCATGAGGAAGCGAGGGGCTTGATAGTGAGCATTGGAGCTGTACCACAATTGGTTGAATGTTTGCCTTCTCTTGACCACGAATGTTTAGAATTAGCCCTTTTCGTATTGGATGCATTGTCATCTCTACCACAGGGAGTATTAGCGATGAAGGATTGTTCGAAGACTATACCGAATATGGTGAGGGTTCTGATGAGAATTTCAGAGAGTTGTACTCAATATGCGTTGTCAATCTTATCATCTATATGCAAACTTGCCCCTGAGGAATGTTCATCAATTGCCTTGGATGCCGGTCTAGCAGCAAAGCTCCTCCTCGTGATCCAGAGTTGTAGTGATCCTGTCTTGAAGCAGCAATCCTCAGAGCTGTTGAAGCTGTGTAGTCTAAACTATTCTGATACAATATTCATTTCCAAGTGCAAGCTTACAAGGACAATCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0033554 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0047484 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0050896 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071214 GO:0071470 GO:0071472 GO:0071704 GO:0080134 GO:0104004 GO:0140096 GO:1901000 GO:1901001 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

U-box

Protein Analysis

454

Amino Acids

49.18

Weight (kDa)

6.15

Isoelectric Point (pI)

45.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
U-box	PF04564	69 - 139	1.1e-13	U-box domain
ARM_PUB	PF25598	157 - 453	1.1e-79	Plant U-box protein ARM repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003631)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49810 AT5G65920 AT5G65920
fragaria_vesca	FvH4_1g18010 FvH4_1g18010 FvH4_1g18010 FvH4_2g32810
malus_domestica	MD08G1079800.v1.1 MD15G1066700.v1.1
prunus_persica	Prupe.1G420500_v2.0.a1 Prupe.6G218400_v2.0.a1
pyrus_communis	pycom08g06590 pycom15g06330
rosa_chinensis	RchiOBHm_Chr2g0108501 RchiOBHm_Chr6g0309891
rosa_laevigata	RLG00000010526 RLG00000017673
rosa_multiflora	Rmu_co8433595.1_g000001 Rmu_sc0000294.1_g000001 Rmu_sc0002372.1_g000052 Rmu_sc0009846.1_g000001
rosa_roxburghii	Rroxscaffold_2G00135090 Rroxscaffold_7G00159070
rosa_rugosa	Rorug02G0153700 Rorug06G0375700.1
rosa_samantha	Rh2AG202600 Rh2BG215500 Rh2CG206700 Rh2DG209800 Rh6AG489500 Rh6BG498900 Rh6CG503700 Rh6DG489900
rosa_wichuraiana	Rw2G016190 Rw6G042600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	318
AclWI	GGATC	3 cut(s)	174, 1234, 1250
AcsI	RAATTY	3 cut(s)	661, 691, 1119
AcuI	CTGAAG	1 cut(s)	503
AdeI	CACNNNGTG	1 cut(s)	538
AfaI	GTAC	3 cut(s)	769, 966, 1135
AfiI	CCNNNNNNNGG	2 cut(s)	24, 375
AflIII	ACRYGT	1 cut(s)	625
AgsI	TTSAA	5 cut(s)	310, 736, 980, 1267, 1291
AjnI	CCWGG	3 cut(s)	401, 837, 892
AleI	CACNNNNGTG	1 cut(s)	86
Alw26I	GTCTC	4 cut(s)	470, 606, 746, 865
AlwI	GGATC	3 cut(s)	174, 1234, 1250
ApeKI	GCWGC	3 cut(s)	461, 1220, 1270
ApoI	RAATTY	3 cut(s)	661, 691, 1119
Asp700I	GAANNNNTTC	1 cut(s)	447
AspS9I	GGNCC	2 cut(s)	378, 611
AsuHPI	GGTGA	4 cut(s)	167, 316, 502, 1114
AsuII	TTCGAA	1 cut(s)	1082
AvaII	GGWCC	2 cut(s)	378, 611
AxyI	CCTNAGG	1 cut(s)	1182
BaeGI	GKGCMC	1 cut(s)	321
BanI	GGYRCC	1 cut(s)	318
BanII	GRGCYC	1 cut(s)	547
BauI	CACGAG	1 cut(s)	1235
BbsI	GAAGAC	2 cut(s)	569, 1091
BbvI	GCAGC	3 cut(s)	448, 1232, 1282
BccI	CCATC	6 cut(s)	23, 41, 53, 89, 396, 715
BcgI	CGANNNNNNTGC	2 cut(s)	679, 713
BciT130I	CCWGG	3 cut(s)	403, 839, 894
BclI	TGATCA	1 cut(s)	777
BcoDI	GTCTC	4 cut(s)	470, 606, 746, 865
BfaI	CTAG	4 cut(s)	71, 504, 558, 1217
BfmI	CTRYAG	2 cut(s)	462, 591
BglII	AGATCT	1 cut(s)	73
BisI	GCNGC	3 cut(s)	462, 1221, 1271
BlsI	GCNGC	3 cut(s)	463, 1222, 1272
Bme1390I	CCNGG	3 cut(s)	403, 839, 894
Bme18I	GGWCC	2 cut(s)	378, 611
BmgT120I	GGNCC	2 cut(s)	378, 611
BmiI	GGNNCC	3 cut(s)	207, 320, 380
BmrFI	CCNGG	3 cut(s)	403, 839, 894
BmrI	ACTGGG	2 cut(s)	279, 766
BmsI	GCATC	4 cut(s)	538, 687, 1024, 1198
BmuI	ACTGGG	2 cut(s)	279, 766
BpiI	GAAGAC	2 cut(s)	569, 1091
BplI	GAGNNNNNCTC	2 cut(s)	1120, 1152
Bpu14I	TTCGAA	1 cut(s)	1082
BpuEI	CTTGAG	3 cut(s)	257, 284, 503
BsaJI	CCNNGG	1 cut(s)	1203
BsaXI	ACNNNNNCTCC	2 cut(s)	888, 918
Bsc4I	CCNNNNNNNGG	2 cut(s)	24, 375
Bse118I	RCCGGY	2 cut(s)	703, 1211
Bse1I	ACTGG	3 cut(s)	151, 274, 772
Bse21I	CCTNAGG	1 cut(s)	1182
Bse3DI	GCAATG	1 cut(s)	645
BseBI	CCWGG	3 cut(s)	403, 839, 894
BseDI	CCNNGG	1 cut(s)	1203
BseGI	GGATG	4 cut(s)	34, 361, 1039, 1213
BseLI	CCNNNNNNNGG	2 cut(s)	24, 375
BseMI	GCAATG	1 cut(s)	645
BseMII	CTCAG	6 cut(s)	161, 192, 890, 922, 1173, 1293
BseNI	ACTGG	3 cut(s)	151, 274, 772
BseRI	GAGGAG	6 cut(s)	69, 200, 809, 896, 1220, 1223
BseSI	GKGCMC	1 cut(s)	321
BseXI	GCAGC	3 cut(s)	448, 1232, 1282
BseYI	CCCAGC	1 cut(s)	38
BshNI	GGYRCC	1 cut(s)	318
BsiSI	CCGG	2 cut(s)	704, 1212
BslI	CCNNNNNNNGG	2 cut(s)	24, 375
BsmAI	GTCTC	4 cut(s)	470, 606, 746, 865
BsmBI	CGTCTC	3 cut(s)	470, 606, 746
Bsp119I	TTCGAA	1 cut(s)	1082
Bsp1286I	GDGCHC	2 cut(s)	321, 547
Bsp143I	GATC	6 cut(s)	73, 166, 777, 809, 1239, 1255
BspCNI	CTCAG	6 cut(s)	162, 193, 891, 921, 1174, 1292
BspHI	TCATGA	1 cut(s)	426
BspLI	GGNNCC	3 cut(s)	207, 320, 380
BspMAI	CTGCAG	1 cut(s)	466
BspPI	GGATC	3 cut(s)	174, 1234, 1250
BspT104I	TTCGAA	1 cut(s)	1082
BspT107I	GGYRCC	1 cut(s)	318
BsrDI	GCAATG	1 cut(s)	645
BsrFI	RCCGGY	2 cut(s)	703, 1211
BsrI	ACTGG	3 cut(s)	151, 274, 772
BssAI	RCCGGY	2 cut(s)	703, 1211
BssECI	CCNNGG	1 cut(s)	1203
BssMI	GATC	6 cut(s)	73, 166, 777, 809, 1239, 1255
BssSI	CACGAG	1 cut(s)	1235
BssT1I	CCWWGG	1 cut(s)	1203
Bst2BI	CACGAG	1 cut(s)	1235
Bst2UI	CCWGG	3 cut(s)	403, 839, 894
Bst4CI	ACNGT	1 cut(s)	880
BstBI	TTCGAA	1 cut(s)	1082
BstC8I	GCNNGC	3 cut(s)	513, 923, 1340
BstDEI	CTNAG	6 cut(s)	170, 201, 899, 908, 1182, 1279
BstENI	CCTNNNNNAGG	1 cut(s)	22
BstF5I	GGATG	4 cut(s)	34, 361, 1039, 1213
BstKTI	GATC	6 cut(s)	76, 169, 780, 812, 1242, 1258
BstMAI	GTCTC	4 cut(s)	470, 606, 746, 865
BstMBI	GATC	6 cut(s)	73, 166, 777, 809, 1239, 1255
BstMWI	GCNNNNNNNGC	3 cut(s)	1208, 1217, 1291
BstNI	CCWGG	3 cut(s)	403, 839, 894
BstNSI	RCATGY	2 cut(s)	68, 629
BstSCI	CCNGG	3 cut(s)	401, 837, 892
BstSFI	CTRYAG	2 cut(s)	462, 591
BstSLI	GKGCMC	1 cut(s)	321
BstV1I	GCAGC	3 cut(s)	448, 1232, 1282
BstV2I	GAAGAC	2 cut(s)	569, 1091
BstX2I	RGATCY	2 cut(s)	73, 166
BstYI	RGATCY	2 cut(s)	73, 166
Bsu36I	CCTNAGG	1 cut(s)	1182
BtgZI	GCGATG	1 cut(s)	1082
BtsCI	GGATG	4 cut(s)	34, 361, 1039, 1213
BtsI	GCAGTG	1 cut(s)	552
BtsIMutI	CAGTG	2 cut(s)	267, 552
Cac8I	GCNNGC	3 cut(s)	513, 923, 1340
CciI	TCATGA	1 cut(s)	426
Cfr10I	RCCGGY	2 cut(s)	703, 1211
Cfr13I	GGNCC	2 cut(s)	378, 611
CseI	GACGC	1 cut(s)	487
CsiI	ACCWGGT	1 cut(s)	401
Csp6I	GTAC	3 cut(s)	768, 965, 1134
CviAII	CATG	5 cut(s)	65, 427, 548, 626, 926
CviQI	GTAC	3 cut(s)	768, 965, 1134
DdeI	CTNAG	6 cut(s)	170, 201, 899, 908, 1182, 1279
DpnI	GATC	6 cut(s)	75, 168, 779, 811, 1241, 1257
DpnII	GATC	6 cut(s)	73, 166, 777, 809, 1239, 1255
DraIII	CACNNNGTG	1 cut(s)	538
Eco130I	CCWWGG	1 cut(s)	1203
Eco24I	GRGCYC	1 cut(s)	547
Eco47I	GGWCC	2 cut(s)	378, 611
Eco57I	CTGAAG	1 cut(s)	503
Eco81I	CCTNAGG	1 cut(s)	1182
EcoNI	CCTNNNNNAGG	1 cut(s)	22
EcoO109I	RGGNCCY	1 cut(s)	378
EcoRII	CCWGG	3 cut(s)	401, 837, 892
EcoT14I	CCWWGG	1 cut(s)	1203
EcoT22I	ATGCAT	1 cut(s)	1039
EcoT38I	GRGCYC	1 cut(s)	547
ErhI	CCWWGG	1 cut(s)	1203
Esp3I	CGTCTC	3 cut(s)	470, 606, 746
FaeI	CATG	5 cut(s)	68, 430, 551, 629, 929
FatI	CATG	5 cut(s)	64, 426, 547, 625, 925
FbaI	TGATCA	1 cut(s)	777
Fnu4HI	GCNGC	3 cut(s)	462, 1221, 1271
FokI	GGATG	4 cut(s)	41, 368, 1046, 1220
FriOI	GRGCYC	1 cut(s)	547
Fsp4HI	GCNGC	3 cut(s)	462, 1221, 1271
FspBI	CTAG	4 cut(s)	71, 504, 558, 1217
GluI	GCNGC	3 cut(s)	462, 1221, 1271
GsaI	CCCAGC	1 cut(s)	42
HapII	CCGG	2 cut(s)	704, 1212
HgaI	GACGC	1 cut(s)	487
Hin1II	CATG	5 cut(s)	68, 430, 551, 629, 929
HindIII	AAGCTT	1 cut(s)	1340
HinfI	GANTC	4 cut(s)	359, 674, 680, 885
HpaII	CCGG	2 cut(s)	704, 1212
HphI	GGTGA	4 cut(s)	167, 316, 502, 1114
Hpy166II	GTNNAC	1 cut(s)	727
Hpy188III	TCNNGA	9 cut(s)	71, 77, 236, 427, 684, 995, 1237, 1243, 1264
Hpy8I	GTNNAC	1 cut(s)	727
HpyAV	CCTTC	7 cut(s)	219, 450, 481, 487, 793, 999, 1066
HpyCH4III	ACNGT	1 cut(s)	880
HpyCH4IV	ACGT	1 cut(s)	534
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1208, 1217, 1291
HpyF3I	CTNAG	6 cut(s)	170, 201, 899, 908, 1182, 1279
HpySE526I	ACGT	1 cut(s)	534
Hsp92II	CATG	5 cut(s)	68, 430, 551, 629, 929
Ksp22I	TGATCA	1 cut(s)	777
Kzo9I	GATC	6 cut(s)	73, 166, 777, 809, 1239, 1255
LmnI	GCTCC	4 cut(s)	187, 346, 959, 1233
Lsp1109I	GCAGC	3 cut(s)	448, 1232, 1282
LweI	GCATC	4 cut(s)	538, 687, 1024, 1198
MabI	ACCWGGT	1 cut(s)	401
MaeI	CTAG	4 cut(s)	71, 504, 558, 1217
MaeII	ACGT	1 cut(s)	534
MaeIII	GTNAC	4 cut(s)	256, 364, 550, 666
MalI	GATC	6 cut(s)	75, 168, 779, 811, 1241, 1257
MboI	GATC	6 cut(s)	73, 166, 777, 809, 1239, 1255
MboII	GAAGA	7 cut(s)	187, 442, 445, 455, 496, 574, 1096
MfeI	CAATTG	5 cut(s)	161, 747, 763, 971, 1197
MflI	RGATCY	2 cut(s)	73, 166
MhlI	GDGCHC	2 cut(s)	321, 547
MlyI	GAGTC	2 cut(s)	689, 894
MmeI	TCCRAC	5 cut(s)	315, 356, 420, 823, 862
Mph1103I	ATGCAT	1 cut(s)	1039
MroXI	GAANNNNTTC	1 cut(s)	447
MseI	TTAA	2 cut(s)	788, 861
MslI	CAYNNNNRTG	2 cut(s)	86, 1165
MspA1I	CMGCKG	1 cut(s)	86
MspI	CCGG	2 cut(s)	704, 1212
MspR9I	CCNGG	3 cut(s)	403, 839, 894
MunI	CAATTG	5 cut(s)	161, 747, 763, 971, 1197
MvaI	CCWGG	3 cut(s)	403, 839, 894
MwoI	GCNNNNNNNGC	3 cut(s)	1208, 1217, 1291
NdeII	GATC	6 cut(s)	73, 166, 777, 809, 1239, 1255
NlaIII	CATG	5 cut(s)	68, 430, 551, 629, 929
NlaIV	GGNNCC	3 cut(s)	207, 320, 380
NmuCI	GTSAC	4 cut(s)	256, 364, 550, 666
NsiI	ATGCAT	1 cut(s)	1039
NspI	RCATGY	2 cut(s)	68, 629
NspV	TTCGAA	1 cut(s)	1082
OliI	CACNNNNGTG	1 cut(s)	86
PagI	TCATGA	1 cut(s)	426
PciI	ACATGT	1 cut(s)	625
PdmI	GAANNNNTTC	1 cut(s)	447
PfeI	GAWTC	2 cut(s)	359, 674
PkrI	GCNGC	3 cut(s)	463, 1222, 1272
PleI	GAGTC	2 cut(s)	688, 893
PpsI	GAGTC	2 cut(s)	688, 893
PpuMI	RGGWCCY	1 cut(s)	378
PscI	ACATGT	1 cut(s)	625
Psp5II	RGGWCCY	1 cut(s)	378
Psp6I	CCWGG	3 cut(s)	401, 837, 892
PspFI	CCCAGC	1 cut(s)	38
PspGI	CCWGG	3 cut(s)	401, 837, 892
PspN4I	GGNNCC	3 cut(s)	207, 320, 380
PspPI	GGNCC	2 cut(s)	378, 611
PspPPI	RGGWCCY	1 cut(s)	378
PstI	CTGCAG	1 cut(s)	466
PsuI	RGATCY	2 cut(s)	73, 166
PvuII	CAGCTG	1 cut(s)	86
RsaI	GTAC	3 cut(s)	769, 966, 1135
RsaNI	GTAC	3 cut(s)	768, 965, 1134
RseI	CAYNNNNRTG	2 cut(s)	86, 1165
SaqAI	TTAA	2 cut(s)	788, 861
SatI	GCNGC	3 cut(s)	462, 1221, 1271
Sau3AI	GATC	6 cut(s)	73, 166, 777, 809, 1239, 1255
Sau96I	GGNCC	2 cut(s)	378, 611
SchI	GAGTC	2 cut(s)	689, 894
ScrFI	CCNGG	3 cut(s)	403, 839, 894
SduI	GDGCHC	2 cut(s)	321, 547
SexAI	ACCWGGT	1 cut(s)	401
SfaNI	GCATC	4 cut(s)	538, 687, 1024, 1198
SfcI	CTRYAG	2 cut(s)	462, 591
SfuI	TTCGAA	1 cut(s)	1082
SinI	GGWCC	2 cut(s)	378, 611
SmiMI	CAYNNNNRTG	2 cut(s)	86, 1165
SmlI	CTYRAG	3 cut(s)	236, 299, 518
SmoI	CTYRAG	3 cut(s)	236, 299, 518
SspI	AATATT	1 cut(s)	1323
SspMI	CTAG	4 cut(s)	71, 504, 558, 1217
StyD4I	CCNGG	3 cut(s)	401, 837, 892
StyI	CCWWGG	1 cut(s)	1203
TaaI	ACNGT	1 cut(s)	880
TaiI	ACGT	1 cut(s)	537
TaqI	TCGA	4 cut(s)	638, 808, 824, 1082
TatI	WGTACW	1 cut(s)	1133
TfiI	GAWTC	2 cut(s)	359, 674
Tru1I	TTAA	2 cut(s)	788, 861
Tru9I	TTAA	2 cut(s)	788, 861
TscAI	CASTG	2 cut(s)	274, 559
TseFI	GTSAC	4 cut(s)	256, 364, 550, 666
TseI	GCWGC	3 cut(s)	461, 1220, 1270
Tsp45I	GTSAC	4 cut(s)	256, 364, 550, 666
TspDTI	ATGAA	4 cut(s)	443, 1085, 1182, 1315
TspGWI	ACGGA	1 cut(s)	352
TspRI	CASTG	2 cut(s)	274, 559
VpaK11BI	GGWCC	2 cut(s)	378, 611
XagI	CCTNNNNNAGG	1 cut(s)	22
XapI	RAATTY	3 cut(s)	661, 691, 1119
XbaI	TCTAGA	1 cut(s)	70
XceI	RCATGY	2 cut(s)	68, 629
XmnI	GAANNNNTTC	1 cut(s)	447
XspI	CTAG	4 cut(s)	71, 504, 558, 1217
Zsp2I	ATGCAT	1 cut(s)	1039

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.