Prupe.1G420500_v2.0.a1

RING-type E3 ubiquitin transferase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
36360470 .. 36361840
1371 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G420500.1

Sequence Viewer

Length: 1371 bp
ATGCCTATGTACCAGCCAACTGGTAGGAGAAGAGTTGGGGATATGAAGTTTGATGTGGGTAGTGGTGGCCAAGTTCTAGATCTGGACACTGCAGTGAAAGATGGGATTTTGGGTGGTGGAGATGGGTTAATTTGTGGTGGTGGTGTTGGTGTTGGTGTTGTGGCTGAAAAGTTGGATCTGAAGAAGATGATTGAGGAGCTTGAGTCCATTGAGATTCCTTCAGTCTTCATTTGCCCAATCTCATTGGAGCCAATGCAAGACCCTGTAACCCTTTGCACGGGTCAGACTTACGAGAGATCAAACATTCTCAAATGGTTCTCTTTGGGCCACTATACTTGTCCCACAACAATGCAAGAGCTCTGGGATGATTCAGTCACACCGAACAAGACCCTTCAGCAGCTGATTTGCAGTTGGTTTTCACAGAAGTACTTGGCCATGAAGAAGAGGTCAGAGGATGTGCAAGGAAGGGTTTTGGAGATTCTGGAGACACTGAAGAAGGTTAAGGGCCAAGCCAGAGTTCAAGCTCTCAAGGAGCTCAGACAGGTAGTGACTGCTCATGCATCAGCTAAGAACACAGTGGTGGACAATGGAGGTGTTGCTTTGATTACTTCTCTGTTGGGTCCTTTCACTTCACACGCTGTTGGGTCAGAAGCAATTGGGACACTAGTGAATTTGAACCTCAGTTCAGAAGCCAAGACAATTCTGATGCAACCGGCAAAGATATCGTTAATGGTTGATATGTTGAATGAGGGATCCATTGAGACCAAGATCAATTGTACGAAATTGATTGAAGTTTTGATGGAGGGCAAGGATTTGGAGTCAGAAAACGTCTCAAGCTTGAGTCTTGTGGTTGGATTGTTGAGGTTAGTGAAGGATAAAAGACACTGTAATGGTGTTTTGCCTGGTCTCAGTCTGCTGAAGACAATTTGTTCGCATGAGTCAGTCAGGAACTCGGTTGTGAGCGTCGGGGCAGTTCCTCAATTGATTGAGCTCTTACCCAATTTGAATCATGAGTGTTTGGAGTTAGCCCTTCATATCCTAGAAGTTTTGTCAACGCTTCCTGAGGGAAGGCAGGCTTTGAAAGATTGTCCTAAGACAATCCCCTGTGTGGTTAGGCTATTGATGAAGGTTTCAGAGAGCTGCACTCAGCTTGCATTGTCAATCTTGTGGGCGGTTTGCAAGCTCGCCCCGGACGAATGCGCTTCGCTTGCTGTGGAGGCAGGTTTGGCAGCCAAGCTGCTTCTTGTAATTCAGAGTGGTTGCAATCCTGTATTGAAGCAAAGGGCTGCAGAGCTCTTGAAGTTGTGTAGTCTAAATTACACTGCCACAATATTTATTTCCAAGTGTAAGCTTACTAGAACAATACAATGA

Protein Analysis

457

Amino Acids

49.41

Weight (kDa)

7.0

Isoelectric Point (pI)

45.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1211
AciI CCGC 1 cut(s) 1172
AclWI GGATC 3 cut(s) 183, 747, 760
AcoI YGGCCR 2 cut(s) 67, 432
AcsI RAATTY 1 cut(s) 670
AcuI CTGAAG 5 cut(s) 200, 204, 377, 512, 938
AfaI GTAC 3 cut(s) 11, 428, 778
AfiI CCNNNNNNNGG 2 cut(s) 277, 1108
AgsI TTSAA 8 cut(s) 521, 676, 745, 791, 1006, 1081, 1276, 1300
AhlI ACTAGT 1 cut(s) 664
AjnI CCWGG 1 cut(s) 901
AjuI GAANNNNNNNTTGG 2 cut(s) 501, 533
AleI CACNNNNGTG 2 cut(s) 92, 578
Alw21I GWGCWC 4 cut(s) 360, 537, 993, 1296
Alw26I GTCTC 4 cut(s) 479, 755, 835, 911
AlwI GGATC 3 cut(s) 183, 747, 760
AlwNI CAGNNNCTG 1 cut(s) 400
AoxI GGCC 4 cut(s) 67, 325, 432, 505
ApeKI GCWGC 5 cut(s) 397, 1140, 1229, 1237, 1286
ApoI RAATTY 1 cut(s) 670
ArsI GACNNNNNNTTYG 2 cut(s) 913, 945
AspLEI GCGC 1 cut(s) 1202
AspS9I GGNCC 3 cut(s) 325, 505, 620
AsuC2I CCSGG 1 cut(s) 1190
AvaII GGWCC 1 cut(s) 620
AxyI CCTNAGG 1 cut(s) 1062
BalI TGGCCA 2 cut(s) 69, 434
BamHI GGATCC 1 cut(s) 752
BanII GRGCYC 4 cut(s) 360, 537, 993, 1296
BbsI GAAGAC 2 cut(s) 217, 926
Bbv12I GWGCWC 4 cut(s) 360, 537, 993, 1296
BbvI GCAGC 5 cut(s) 409, 1127, 1224, 1241, 1273
BccI CCATC 3 cut(s) 95, 116, 793
BcgI CGANNNNNNTGC 2 cut(s) 705, 739
BciT130I CCWGG 1 cut(s) 903
BcnI CCSGG 1 cut(s) 1190
BcoDI GTCTC 4 cut(s) 479, 755, 835, 911
BcuI ACTAGT 1 cut(s) 664
BfaI CTAG 4 cut(s) 77, 665, 1040, 1356
BfmI CTRYAG 2 cut(s) 90, 1287
BfuAI ACCTGC 1 cut(s) 1211
BglII AGATCT 1 cut(s) 79
BisI GCNGC 5 cut(s) 398, 1141, 1230, 1238, 1287
BlsI GCNGC 5 cut(s) 399, 1142, 1231, 1239, 1288
BmcAI AGTACT 1 cut(s) 428
Bme1390I CCNGG 2 cut(s) 903, 1190
Bme18I GGWCC 1 cut(s) 620
BmgT120I GGNCC 3 cut(s) 325, 505, 620
BmiI GGNNCC 3 cut(s) 249, 621, 754
BmrFI CCNGG 2 cut(s) 903, 1190
BmsI GCATC 2 cut(s) 569, 696
BpiI GAAGAC 2 cut(s) 217, 926
BplI GAGNNNNNCTC 2 cut(s) 1129, 1161
BpmI CTGGAG 1 cut(s) 503
BpuEI CTTGAG 4 cut(s) 221, 512, 817, 859
BpuMI CCSGG 1 cut(s) 1190
BsaI GGTCTC 2 cut(s) 755, 911
BsaJI CCNNGG 1 cut(s) 1188
BsaXI ACNNNNNCTCC 2 cut(s) 188, 218
Bsc4I CCNNNNNNNGG 2 cut(s) 277, 1108
Bse118I RCCGGY 1 cut(s) 712
Bse1I ACTGG 1 cut(s) 25
Bse21I CCTNAGG 1 cut(s) 1062
BseBI CCWGG 1 cut(s) 903
BseDI CCNNGG 1 cut(s) 1188
BseGI GGATG 2 cut(s) 370, 460
BseLI CCNNNNNNNGG 2 cut(s) 277, 1108
BseMII CTCAG 5 cut(s) 550, 694, 922, 1053, 1160
BseNI ACTGG 1 cut(s) 25
BseRI GAGGAG 1 cut(s) 209
BseXI GCAGC 5 cut(s) 409, 1127, 1224, 1241, 1273
BsgI GTGCAG 1 cut(s) 1126
BshFI GGCC 4 cut(s) 69, 327, 434, 507
BsiHKAI GWGCWC 4 cut(s) 360, 537, 993, 1296
BsiSI CCGG 2 cut(s) 713, 1190
BslFI GGGAC 2 cut(s) 324, 673
BslI CCNNNNNNNGG 2 cut(s) 277, 1108
BsmAI GTCTC 4 cut(s) 479, 755, 835, 911
BsmBI CGTCTC 1 cut(s) 835
BsmFI GGGAC 2 cut(s) 324, 673
BsmI GAATGC 1 cut(s) 1202
BsnI GGCC 4 cut(s) 69, 327, 434, 507
Bso31I GGTCTC 2 cut(s) 755, 911
Bsp1286I GDGCHC 4 cut(s) 360, 537, 993, 1296
Bsp143I GATC 5 cut(s) 79, 175, 296, 752, 768
BspACI CCGC 1 cut(s) 1172
BspANI GGCC 4 cut(s) 69, 327, 434, 507
BspCNI CTCAG 5 cut(s) 549, 693, 921, 1054, 1159
BspHI TCATGA 1 cut(s) 1009
BspLI GGNNCC 3 cut(s) 249, 621, 754
BspMAI CTGCAG 2 cut(s) 94, 1291
BspMI ACCTGC 1 cut(s) 1211
BspPI GGATC 3 cut(s) 183, 747, 760
BspTNI GGTCTC 2 cut(s) 755, 911
BsrFI RCCGGY 1 cut(s) 712
BsrI ACTGG 1 cut(s) 25
BssAI RCCGGY 1 cut(s) 712
BssECI CCNNGG 1 cut(s) 1188
BssMI GATC 5 cut(s) 79, 175, 296, 752, 768
Bst2UI CCWGG 1 cut(s) 903
Bst4CI ACNGT 2 cut(s) 577, 887
Bst6I CTCTTC 2 cut(s) 25, 437
BstC8I GCNNGC 5 cut(s) 1074, 1152, 1181, 1185, 1209
BstDEI CTNAG 7 cut(s) 536, 567, 680, 908, 1062, 1092, 1146
BstF5I GGATG 2 cut(s) 370, 460
BstHHI GCGC 1 cut(s) 1202
BstKTI GATC 5 cut(s) 82, 178, 299, 755, 771
BstMAI GTCTC 4 cut(s) 479, 755, 835, 911
BstMBI GATC 5 cut(s) 79, 175, 296, 752, 768
BstMWI GCNNNNNNNGC 3 cut(s) 1208, 1217, 1226
BstNI CCWGG 1 cut(s) 903
BstSCI CCNGG 2 cut(s) 901, 1188
BstSFI CTRYAG 2 cut(s) 90, 1287
BstV1I GCAGC 5 cut(s) 409, 1127, 1224, 1241, 1273
BstV2I GAAGAC 2 cut(s) 217, 926
BstX2I RGATCY 3 cut(s) 79, 175, 752
BstXI CCANNNNNNTGG 1 cut(s) 20
BstYI RGATCY 3 cut(s) 79, 175, 752
Bsu36I CCTNAGG 1 cut(s) 1062
BsuRI GGCC 4 cut(s) 69, 327, 434, 507
BtsCI GGATG 2 cut(s) 370, 460
BtsI GCAGTG 3 cut(s) 87, 99, 1320
BtsIMutI CAGTG 6 cut(s) 87, 99, 488, 582, 883, 1320
BveI ACCTGC 1 cut(s) 1211
Cac8I GCNNGC 5 cut(s) 1074, 1152, 1181, 1185, 1209
CaiI CAGNNNCTG 1 cut(s) 400
CciI TCATGA 1 cut(s) 1009
CfoI GCGC 1 cut(s) 1202
Cfr10I RCCGGY 1 cut(s) 712
Cfr13I GGNCC 3 cut(s) 325, 505, 620
CseI GACGC 1 cut(s) 952
Csp6I GTAC 3 cut(s) 10, 427, 777
CspCI CAANNNNNGTGG 2 cut(s) 317, 352
CviAII CATG 4 cut(s) 436, 557, 935, 1010
CviQI GTAC 3 cut(s) 10, 427, 777
DdeI CTNAG 7 cut(s) 536, 567, 680, 908, 1062, 1092, 1146
DpnI GATC 5 cut(s) 81, 177, 298, 754, 770
DpnII GATC 5 cut(s) 79, 175, 296, 752, 768
EaeI YGGCCR 2 cut(s) 67, 432
Eam1104I CTCTTC 2 cut(s) 25, 437
EarI CTCTTC 2 cut(s) 25, 437
Ecl136II GAGCTC 4 cut(s) 358, 535, 991, 1294
Eco24I GRGCYC 4 cut(s) 360, 537, 993, 1296
Eco31I GGTCTC 2 cut(s) 755, 911
Eco32I GATATC 1 cut(s) 723
Eco47I GGWCC 1 cut(s) 620
Eco53kI GAGCTC 4 cut(s) 358, 535, 991, 1294
Eco57I CTGAAG 5 cut(s) 200, 204, 377, 512, 938
Eco81I CCTNAGG 1 cut(s) 1062
EcoICRI GAGCTC 4 cut(s) 358, 535, 991, 1294
EcoO109I RGGNCCY 1 cut(s) 620
EcoRII CCWGG 1 cut(s) 901
EcoRV GATATC 1 cut(s) 723
EcoT22I ATGCAT 1 cut(s) 562
EcoT38I GRGCYC 4 cut(s) 360, 537, 993, 1296
Esp3I CGTCTC 1 cut(s) 835
FaeI CATG 4 cut(s) 439, 560, 938, 1013
FaiI YATR 9 cut(s) 8, 44, 333, 437, 558, 740, 936, 1011, 1035
FalI AAGNNNNNCTT 2 cut(s) 1060, 1092
FaqI GGGAC 2 cut(s) 324, 673
FatI CATG 4 cut(s) 435, 556, 934, 1009
Fnu4HI GCNGC 5 cut(s) 398, 1141, 1230, 1238, 1287
FokI GGATG 2 cut(s) 377, 467
FriOI GRGCYC 4 cut(s) 360, 537, 993, 1296
Fsp4HI GCNGC 5 cut(s) 398, 1141, 1230, 1238, 1287
FspBI CTAG 4 cut(s) 77, 665, 1040, 1356
GlaI GCGC 1 cut(s) 1201
GluI GCNGC 5 cut(s) 398, 1141, 1230, 1238, 1287
GsuI CTGGAG 1 cut(s) 503
HaeIII GGCC 4 cut(s) 69, 327, 434, 507
HapII CCGG 2 cut(s) 713, 1190
HgaI GACGC 1 cut(s) 952
HhaI GCGC 1 cut(s) 1202
Hin1II CATG 4 cut(s) 439, 560, 938, 1013
Hin6I GCGC 1 cut(s) 1200
HinP1I GCGC 1 cut(s) 1200
HincII GTYRAC 1 cut(s) 1053
HindII GTYRAC 1 cut(s) 1053
HindIII AAGCTT 2 cut(s) 835, 1349
HinfI GANTC 8 cut(s) 203, 214, 368, 478, 818, 841, 938, 1006
HpaII CCGG 2 cut(s) 713, 1190
Hpy166II GTNNAC 2 cut(s) 583, 1053
Hpy188III TCNNGA 7 cut(s) 77, 83, 482, 946, 1010, 1061, 1297
Hpy8I GTNNAC 2 cut(s) 583, 1053
Hpy99I CGWCG 1 cut(s) 968
HpyAV CCTTC 8 cut(s) 228, 401, 459, 490, 865, 1040, 1062, 1120
HpyCH4III ACNGT 2 cut(s) 577, 887
HpyCH4IV ACGT 1 cut(s) 828
HpyF10VI GCNNNNNNNGC 3 cut(s) 1208, 1217, 1226
HpyF3I CTNAG 7 cut(s) 536, 567, 680, 908, 1062, 1092, 1146
HpySE526I ACGT 1 cut(s) 828
Hsp92II CATG 4 cut(s) 439, 560, 938, 1013
HspAI GCGC 1 cut(s) 1200
Kzo9I GATC 5 cut(s) 79, 175, 296, 752, 768
LmnI GCTCC 3 cut(s) 196, 247, 532
Lsp1109I GCAGC 5 cut(s) 409, 1127, 1224, 1241, 1273
LweI GCATC 2 cut(s) 569, 696
MaeI CTAG 4 cut(s) 77, 665, 1040, 1356
MaeII ACGT 1 cut(s) 828
MaeIII GTNAC 3 cut(s) 265, 373, 547
MalI GATC 5 cut(s) 81, 177, 298, 754, 770
MboI GATC 5 cut(s) 79, 175, 296, 752, 768
MboII GAAGA 8 cut(s) 42, 193, 196, 217, 451, 454, 505, 931
MfeI CAATTG 3 cut(s) 654, 772, 980
MflI RGATCY 3 cut(s) 79, 175, 752
MhlI GDGCHC 4 cut(s) 360, 537, 993, 1296
MlsI TGGCCA 2 cut(s) 69, 434
MluNI TGGCCA 2 cut(s) 69, 434
MlyI GAGTC 4 cut(s) 212, 827, 850, 947
MmeI TCCRAC 2 cut(s) 153, 832
Mox20I TGGCCA 2 cut(s) 69, 434
Mph1103I ATGCAT 1 cut(s) 562
MscI TGGCCA 2 cut(s) 69, 434
MseI TTAA 3 cut(s) 128, 501, 728
MslI CAYNNNNRTG 4 cut(s) 92, 347, 578, 888
Msp20I TGGCCA 2 cut(s) 69, 434
MspA1I CMGCKG 1 cut(s) 400
MspI CCGG 2 cut(s) 713, 1190
MspR9I CCNGG 2 cut(s) 903, 1190
MunI CAATTG 3 cut(s) 654, 772, 980
Mva1269I GAATGC 1 cut(s) 1202
MvaI CCWGG 1 cut(s) 903
MwoI GCNNNNNNNGC 3 cut(s) 1208, 1217, 1226
NciI CCSGG 1 cut(s) 1190
NdeII GATC 5 cut(s) 79, 175, 296, 752, 768
NlaIII CATG 4 cut(s) 439, 560, 938, 1013
NlaIV GGNNCC 3 cut(s) 249, 621, 754
NmuCI GTSAC 2 cut(s) 373, 547
NsiI ATGCAT 1 cut(s) 562
OliI CACNNNNGTG 2 cut(s) 92, 578
PagI TCATGA 1 cut(s) 1009
PcsI WCGNNNNNNNCGW 1 cut(s) 1191
PctI GAATGC 1 cut(s) 1202
PfeI GAWTC 4 cut(s) 214, 368, 478, 1006
PkrI GCNGC 5 cut(s) 399, 1142, 1231, 1239, 1288
PleI GAGTC 4 cut(s) 211, 826, 849, 946
PpsI GAGTC 4 cut(s) 211, 826, 849, 946
PpuMI RGGWCCY 1 cut(s) 620
Psp124BI GAGCTC 4 cut(s) 360, 537, 993, 1296
Psp5II RGGWCCY 1 cut(s) 620
Psp6I CCWGG 1 cut(s) 901
PspGI CCWGG 1 cut(s) 901
PspN4I GGNNCC 3 cut(s) 249, 621, 754
PspPI GGNCC 3 cut(s) 325, 505, 620
PspPPI RGGWCCY 1 cut(s) 620
PstI CTGCAG 2 cut(s) 94, 1291
PstNI CAGNNNCTG 1 cut(s) 400
PsuI RGATCY 3 cut(s) 79, 175, 752
PvuII CAGCTG 1 cut(s) 400
RsaI GTAC 3 cut(s) 11, 428, 778
RsaNI GTAC 3 cut(s) 10, 427, 777
RseI CAYNNNNRTG 4 cut(s) 92, 347, 578, 888
SacI GAGCTC 4 cut(s) 360, 537, 993, 1296
SaqAI TTAA 3 cut(s) 128, 501, 728
SatI GCNGC 5 cut(s) 398, 1141, 1230, 1238, 1287
Sau3AI GATC 5 cut(s) 79, 175, 296, 752, 768
Sau96I GGNCC 3 cut(s) 325, 505, 620
ScaI AGTACT 1 cut(s) 428
SchI GAGTC 4 cut(s) 212, 827, 850, 947
ScrFI CCNGG 2 cut(s) 903, 1190
SduI GDGCHC 4 cut(s) 360, 537, 993, 1296
SfaNI GCATC 2 cut(s) 569, 696
SfcI CTRYAG 2 cut(s) 90, 1287
SinI GGWCC 1 cut(s) 620
SmiMI CAYNNNNRTG 4 cut(s) 92, 347, 578, 888
SmlI CTYRAG 4 cut(s) 200, 527, 832, 838
SmoI CTYRAG 4 cut(s) 200, 527, 832, 838
SpeI ACTAGT 1 cut(s) 664
SsiI CCGC 1 cut(s) 1172
SspI AATATT 1 cut(s) 1332
SspMI CTAG 4 cut(s) 77, 665, 1040, 1356
SstI GAGCTC 4 cut(s) 360, 537, 993, 1296
StyD4I CCNGG 2 cut(s) 901, 1188
TaaI ACNGT 2 cut(s) 577, 887
TaiI ACGT 1 cut(s) 831
TatI WGTACW 1 cut(s) 426
TfiI GAWTC 4 cut(s) 214, 368, 478, 1006
Tru1I TTAA 3 cut(s) 128, 501, 728
Tru9I TTAA 3 cut(s) 128, 501, 728
TscAI CASTG 6 cut(s) 94, 99, 495, 582, 890, 1327
TseFI GTSAC 2 cut(s) 373, 547
TseI GCWGC 5 cut(s) 397, 1140, 1229, 1237, 1286
Tsp45I GTSAC 2 cut(s) 373, 547
TspDTI ATGAA 5 cut(s) 59, 217, 452, 1022, 1139
TspRI CASTG 6 cut(s) 94, 99, 495, 582, 890, 1327
VpaK11BI GGWCC 1 cut(s) 620
XapI RAATTY 1 cut(s) 670
XbaI TCTAGA 1 cut(s) 76
XspI CTAG 4 cut(s) 77, 665, 1040, 1356
ZrmI AGTACT 1 cut(s) 428
Zsp2I ATGCAT 1 cut(s) 562
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.