RING-type E3 ubiquitin transferase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G49810 AT5G65920 AT5G65920 |
| fragaria_vesca | FvH4_1g18010 FvH4_1g18010 FvH4_1g18010 FvH4_2g32810 |
| malus_domestica | MD08G1079800.v1.1 MD15G1066700.v1.1 |
| prunus_persica | Prupe.1G420500_v2.0.a1 Prupe.6G218400_v2.0.a1 |
| pyrus_communis | pycom08g06590 pycom15g06330 |
| rosa_chinensis | RchiOBHm_Chr2g0108501 RchiOBHm_Chr6g0309891 |
| rosa_laevigata | RLG00000010526 RLG00000017673 |
| rosa_multiflora | Rmu_co8433595.1_g000001 Rmu_sc0000294.1_g000001 Rmu_sc0002372.1_g000052 Rmu_sc0009846.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00135090 Rroxscaffold_7G00159070 |
| rosa_rugosa | Rorug02G0153700 Rorug06G0375700.1 |
| rosa_samantha | Rh2AG202600 Rh2BG215500 Rh2CG206700 Rh2DG209800 Rh6AG489500 Rh6BG498900 Rh6CG503700 Rh6DG489900 |
| rosa_wichuraiana | Rw2G016190 Rw6G042600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1211 |
| AciI | CCGC | 1 cut(s) | 1172 |
| AclWI | GGATC | 3 cut(s) | 183, 747, 760 |
| AcoI | YGGCCR | 2 cut(s) | 67, 432 |
| AcsI | RAATTY | 1 cut(s) | 670 |
| AcuI | CTGAAG | 5 cut(s) | 200, 204, 377, 512, 938 |
| AfaI | GTAC | 3 cut(s) | 11, 428, 778 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 277, 1108 |
| AgsI | TTSAA | 8 cut(s) | 521, 676, 745, 791, 1006, 1081, 1276, 1300 |
| AhlI | ACTAGT | 1 cut(s) | 664 |
| AjnI | CCWGG | 1 cut(s) | 901 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 501, 533 |
| AleI | CACNNNNGTG | 2 cut(s) | 92, 578 |
| Alw21I | GWGCWC | 4 cut(s) | 360, 537, 993, 1296 |
| Alw26I | GTCTC | 4 cut(s) | 479, 755, 835, 911 |
| AlwI | GGATC | 3 cut(s) | 183, 747, 760 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 400 |
| AoxI | GGCC | 4 cut(s) | 67, 325, 432, 505 |
| ApeKI | GCWGC | 5 cut(s) | 397, 1140, 1229, 1237, 1286 |
| ApoI | RAATTY | 1 cut(s) | 670 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 913, 945 |
| AspLEI | GCGC | 1 cut(s) | 1202 |
| AspS9I | GGNCC | 3 cut(s) | 325, 505, 620 |
| AsuC2I | CCSGG | 1 cut(s) | 1190 |
| AvaII | GGWCC | 1 cut(s) | 620 |
| AxyI | CCTNAGG | 1 cut(s) | 1062 |
| BalI | TGGCCA | 2 cut(s) | 69, 434 |
| BamHI | GGATCC | 1 cut(s) | 752 |
| BanII | GRGCYC | 4 cut(s) | 360, 537, 993, 1296 |
| BbsI | GAAGAC | 2 cut(s) | 217, 926 |
| Bbv12I | GWGCWC | 4 cut(s) | 360, 537, 993, 1296 |
| BbvI | GCAGC | 5 cut(s) | 409, 1127, 1224, 1241, 1273 |
| BccI | CCATC | 3 cut(s) | 95, 116, 793 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 705, 739 |
| BciT130I | CCWGG | 1 cut(s) | 903 |
| BcnI | CCSGG | 1 cut(s) | 1190 |
| BcoDI | GTCTC | 4 cut(s) | 479, 755, 835, 911 |
| BcuI | ACTAGT | 1 cut(s) | 664 |
| BfaI | CTAG | 4 cut(s) | 77, 665, 1040, 1356 |
| BfmI | CTRYAG | 2 cut(s) | 90, 1287 |
| BfuAI | ACCTGC | 1 cut(s) | 1211 |
| BglII | AGATCT | 1 cut(s) | 79 |
| BisI | GCNGC | 5 cut(s) | 398, 1141, 1230, 1238, 1287 |
| BlsI | GCNGC | 5 cut(s) | 399, 1142, 1231, 1239, 1288 |
| BmcAI | AGTACT | 1 cut(s) | 428 |
| Bme1390I | CCNGG | 2 cut(s) | 903, 1190 |
| Bme18I | GGWCC | 1 cut(s) | 620 |
| BmgT120I | GGNCC | 3 cut(s) | 325, 505, 620 |
| BmiI | GGNNCC | 3 cut(s) | 249, 621, 754 |
| BmrFI | CCNGG | 2 cut(s) | 903, 1190 |
| BmsI | GCATC | 2 cut(s) | 569, 696 |
| BpiI | GAAGAC | 2 cut(s) | 217, 926 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1129, 1161 |
| BpmI | CTGGAG | 1 cut(s) | 503 |
| BpuEI | CTTGAG | 4 cut(s) | 221, 512, 817, 859 |
| BpuMI | CCSGG | 1 cut(s) | 1190 |
| BsaI | GGTCTC | 2 cut(s) | 755, 911 |
| BsaJI | CCNNGG | 1 cut(s) | 1188 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 188, 218 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 277, 1108 |
| Bse118I | RCCGGY | 1 cut(s) | 712 |
| Bse1I | ACTGG | 1 cut(s) | 25 |
| Bse21I | CCTNAGG | 1 cut(s) | 1062 |
| BseBI | CCWGG | 1 cut(s) | 903 |
| BseDI | CCNNGG | 1 cut(s) | 1188 |
| BseGI | GGATG | 2 cut(s) | 370, 460 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 277, 1108 |
| BseMII | CTCAG | 5 cut(s) | 550, 694, 922, 1053, 1160 |
| BseNI | ACTGG | 1 cut(s) | 25 |
| BseRI | GAGGAG | 1 cut(s) | 209 |
| BseXI | GCAGC | 5 cut(s) | 409, 1127, 1224, 1241, 1273 |
| BsgI | GTGCAG | 1 cut(s) | 1126 |
| BshFI | GGCC | 4 cut(s) | 69, 327, 434, 507 |
| BsiHKAI | GWGCWC | 4 cut(s) | 360, 537, 993, 1296 |
| BsiSI | CCGG | 2 cut(s) | 713, 1190 |
| BslFI | GGGAC | 2 cut(s) | 324, 673 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 277, 1108 |
| BsmAI | GTCTC | 4 cut(s) | 479, 755, 835, 911 |
| BsmBI | CGTCTC | 1 cut(s) | 835 |
| BsmFI | GGGAC | 2 cut(s) | 324, 673 |
| BsmI | GAATGC | 1 cut(s) | 1202 |
| BsnI | GGCC | 4 cut(s) | 69, 327, 434, 507 |
| Bso31I | GGTCTC | 2 cut(s) | 755, 911 |
| Bsp1286I | GDGCHC | 4 cut(s) | 360, 537, 993, 1296 |
| Bsp143I | GATC | 5 cut(s) | 79, 175, 296, 752, 768 |
| BspACI | CCGC | 1 cut(s) | 1172 |
| BspANI | GGCC | 4 cut(s) | 69, 327, 434, 507 |
| BspCNI | CTCAG | 5 cut(s) | 549, 693, 921, 1054, 1159 |
| BspHI | TCATGA | 1 cut(s) | 1009 |
| BspLI | GGNNCC | 3 cut(s) | 249, 621, 754 |
| BspMAI | CTGCAG | 2 cut(s) | 94, 1291 |
| BspMI | ACCTGC | 1 cut(s) | 1211 |
| BspPI | GGATC | 3 cut(s) | 183, 747, 760 |
| BspTNI | GGTCTC | 2 cut(s) | 755, 911 |
| BsrFI | RCCGGY | 1 cut(s) | 712 |
| BsrI | ACTGG | 1 cut(s) | 25 |
| BssAI | RCCGGY | 1 cut(s) | 712 |
| BssECI | CCNNGG | 1 cut(s) | 1188 |
| BssMI | GATC | 5 cut(s) | 79, 175, 296, 752, 768 |
| Bst2UI | CCWGG | 1 cut(s) | 903 |
| Bst4CI | ACNGT | 2 cut(s) | 577, 887 |
| Bst6I | CTCTTC | 2 cut(s) | 25, 437 |
| BstC8I | GCNNGC | 5 cut(s) | 1074, 1152, 1181, 1185, 1209 |
| BstDEI | CTNAG | 7 cut(s) | 536, 567, 680, 908, 1062, 1092, 1146 |
| BstF5I | GGATG | 2 cut(s) | 370, 460 |
| BstHHI | GCGC | 1 cut(s) | 1202 |
| BstKTI | GATC | 5 cut(s) | 82, 178, 299, 755, 771 |
| BstMAI | GTCTC | 4 cut(s) | 479, 755, 835, 911 |
| BstMBI | GATC | 5 cut(s) | 79, 175, 296, 752, 768 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 1208, 1217, 1226 |
| BstNI | CCWGG | 1 cut(s) | 903 |
| BstSCI | CCNGG | 2 cut(s) | 901, 1188 |
| BstSFI | CTRYAG | 2 cut(s) | 90, 1287 |
| BstV1I | GCAGC | 5 cut(s) | 409, 1127, 1224, 1241, 1273 |
| BstV2I | GAAGAC | 2 cut(s) | 217, 926 |
| BstX2I | RGATCY | 3 cut(s) | 79, 175, 752 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 20 |
| BstYI | RGATCY | 3 cut(s) | 79, 175, 752 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1062 |
| BsuRI | GGCC | 4 cut(s) | 69, 327, 434, 507 |
| BtsCI | GGATG | 2 cut(s) | 370, 460 |
| BtsI | GCAGTG | 3 cut(s) | 87, 99, 1320 |
| BtsIMutI | CAGTG | 6 cut(s) | 87, 99, 488, 582, 883, 1320 |
| BveI | ACCTGC | 1 cut(s) | 1211 |
| Cac8I | GCNNGC | 5 cut(s) | 1074, 1152, 1181, 1185, 1209 |
| CaiI | CAGNNNCTG | 1 cut(s) | 400 |
| CciI | TCATGA | 1 cut(s) | 1009 |
| CfoI | GCGC | 1 cut(s) | 1202 |
| Cfr10I | RCCGGY | 1 cut(s) | 712 |
| Cfr13I | GGNCC | 3 cut(s) | 325, 505, 620 |
| CseI | GACGC | 1 cut(s) | 952 |
| Csp6I | GTAC | 3 cut(s) | 10, 427, 777 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 317, 352 |
| CviAII | CATG | 4 cut(s) | 436, 557, 935, 1010 |
| CviQI | GTAC | 3 cut(s) | 10, 427, 777 |
| DdeI | CTNAG | 7 cut(s) | 536, 567, 680, 908, 1062, 1092, 1146 |
| DpnI | GATC | 5 cut(s) | 81, 177, 298, 754, 770 |
| DpnII | GATC | 5 cut(s) | 79, 175, 296, 752, 768 |
| EaeI | YGGCCR | 2 cut(s) | 67, 432 |
| Eam1104I | CTCTTC | 2 cut(s) | 25, 437 |
| EarI | CTCTTC | 2 cut(s) | 25, 437 |
| Ecl136II | GAGCTC | 4 cut(s) | 358, 535, 991, 1294 |
| Eco24I | GRGCYC | 4 cut(s) | 360, 537, 993, 1296 |
| Eco31I | GGTCTC | 2 cut(s) | 755, 911 |
| Eco32I | GATATC | 1 cut(s) | 723 |
| Eco47I | GGWCC | 1 cut(s) | 620 |
| Eco53kI | GAGCTC | 4 cut(s) | 358, 535, 991, 1294 |
| Eco57I | CTGAAG | 5 cut(s) | 200, 204, 377, 512, 938 |
| Eco81I | CCTNAGG | 1 cut(s) | 1062 |
| EcoICRI | GAGCTC | 4 cut(s) | 358, 535, 991, 1294 |
| EcoO109I | RGGNCCY | 1 cut(s) | 620 |
| EcoRII | CCWGG | 1 cut(s) | 901 |
| EcoRV | GATATC | 1 cut(s) | 723 |
| EcoT22I | ATGCAT | 1 cut(s) | 562 |
| EcoT38I | GRGCYC | 4 cut(s) | 360, 537, 993, 1296 |
| Esp3I | CGTCTC | 1 cut(s) | 835 |
| FaeI | CATG | 4 cut(s) | 439, 560, 938, 1013 |
| FaiI | YATR | 9 cut(s) | 8, 44, 333, 437, 558, 740, 936, 1011, 1035 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1060, 1092 |
| FaqI | GGGAC | 2 cut(s) | 324, 673 |
| FatI | CATG | 4 cut(s) | 435, 556, 934, 1009 |
| Fnu4HI | GCNGC | 5 cut(s) | 398, 1141, 1230, 1238, 1287 |
| FokI | GGATG | 2 cut(s) | 377, 467 |
| FriOI | GRGCYC | 4 cut(s) | 360, 537, 993, 1296 |
| Fsp4HI | GCNGC | 5 cut(s) | 398, 1141, 1230, 1238, 1287 |
| FspBI | CTAG | 4 cut(s) | 77, 665, 1040, 1356 |
| GlaI | GCGC | 1 cut(s) | 1201 |
| GluI | GCNGC | 5 cut(s) | 398, 1141, 1230, 1238, 1287 |
| GsuI | CTGGAG | 1 cut(s) | 503 |
| HaeIII | GGCC | 4 cut(s) | 69, 327, 434, 507 |
| HapII | CCGG | 2 cut(s) | 713, 1190 |
| HgaI | GACGC | 1 cut(s) | 952 |
| HhaI | GCGC | 1 cut(s) | 1202 |
| Hin1II | CATG | 4 cut(s) | 439, 560, 938, 1013 |
| Hin6I | GCGC | 1 cut(s) | 1200 |
| HinP1I | GCGC | 1 cut(s) | 1200 |
| HincII | GTYRAC | 1 cut(s) | 1053 |
| HindII | GTYRAC | 1 cut(s) | 1053 |
| HindIII | AAGCTT | 2 cut(s) | 835, 1349 |
| HinfI | GANTC | 8 cut(s) | 203, 214, 368, 478, 818, 841, 938, 1006 |
| HpaII | CCGG | 2 cut(s) | 713, 1190 |
| Hpy166II | GTNNAC | 2 cut(s) | 583, 1053 |
| Hpy188III | TCNNGA | 7 cut(s) | 77, 83, 482, 946, 1010, 1061, 1297 |
| Hpy8I | GTNNAC | 2 cut(s) | 583, 1053 |
| Hpy99I | CGWCG | 1 cut(s) | 968 |
| HpyAV | CCTTC | 8 cut(s) | 228, 401, 459, 490, 865, 1040, 1062, 1120 |
| HpyCH4III | ACNGT | 2 cut(s) | 577, 887 |
| HpyCH4IV | ACGT | 1 cut(s) | 828 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 1208, 1217, 1226 |
| HpyF3I | CTNAG | 7 cut(s) | 536, 567, 680, 908, 1062, 1092, 1146 |
| HpySE526I | ACGT | 1 cut(s) | 828 |
| Hsp92II | CATG | 4 cut(s) | 439, 560, 938, 1013 |
| HspAI | GCGC | 1 cut(s) | 1200 |
| Kzo9I | GATC | 5 cut(s) | 79, 175, 296, 752, 768 |
| LmnI | GCTCC | 3 cut(s) | 196, 247, 532 |
| Lsp1109I | GCAGC | 5 cut(s) | 409, 1127, 1224, 1241, 1273 |
| LweI | GCATC | 2 cut(s) | 569, 696 |
| MaeI | CTAG | 4 cut(s) | 77, 665, 1040, 1356 |
| MaeII | ACGT | 1 cut(s) | 828 |
| MaeIII | GTNAC | 3 cut(s) | 265, 373, 547 |
| MalI | GATC | 5 cut(s) | 81, 177, 298, 754, 770 |
| MboI | GATC | 5 cut(s) | 79, 175, 296, 752, 768 |
| MboII | GAAGA | 8 cut(s) | 42, 193, 196, 217, 451, 454, 505, 931 |
| MfeI | CAATTG | 3 cut(s) | 654, 772, 980 |
| MflI | RGATCY | 3 cut(s) | 79, 175, 752 |
| MhlI | GDGCHC | 4 cut(s) | 360, 537, 993, 1296 |
| MlsI | TGGCCA | 2 cut(s) | 69, 434 |
| MluNI | TGGCCA | 2 cut(s) | 69, 434 |
| MlyI | GAGTC | 4 cut(s) | 212, 827, 850, 947 |
| MmeI | TCCRAC | 2 cut(s) | 153, 832 |
| Mox20I | TGGCCA | 2 cut(s) | 69, 434 |
| Mph1103I | ATGCAT | 1 cut(s) | 562 |
| MscI | TGGCCA | 2 cut(s) | 69, 434 |
| MseI | TTAA | 3 cut(s) | 128, 501, 728 |
| MslI | CAYNNNNRTG | 4 cut(s) | 92, 347, 578, 888 |
| Msp20I | TGGCCA | 2 cut(s) | 69, 434 |
| MspA1I | CMGCKG | 1 cut(s) | 400 |
| MspI | CCGG | 2 cut(s) | 713, 1190 |
| MspR9I | CCNGG | 2 cut(s) | 903, 1190 |
| MunI | CAATTG | 3 cut(s) | 654, 772, 980 |
| Mva1269I | GAATGC | 1 cut(s) | 1202 |
| MvaI | CCWGG | 1 cut(s) | 903 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 1208, 1217, 1226 |
| NciI | CCSGG | 1 cut(s) | 1190 |
| NdeII | GATC | 5 cut(s) | 79, 175, 296, 752, 768 |
| NlaIII | CATG | 4 cut(s) | 439, 560, 938, 1013 |
| NlaIV | GGNNCC | 3 cut(s) | 249, 621, 754 |
| NmuCI | GTSAC | 2 cut(s) | 373, 547 |
| NsiI | ATGCAT | 1 cut(s) | 562 |
| OliI | CACNNNNGTG | 2 cut(s) | 92, 578 |
| PagI | TCATGA | 1 cut(s) | 1009 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1191 |
| PctI | GAATGC | 1 cut(s) | 1202 |
| PfeI | GAWTC | 4 cut(s) | 214, 368, 478, 1006 |
| PkrI | GCNGC | 5 cut(s) | 399, 1142, 1231, 1239, 1288 |
| PleI | GAGTC | 4 cut(s) | 211, 826, 849, 946 |
| PpsI | GAGTC | 4 cut(s) | 211, 826, 849, 946 |
| PpuMI | RGGWCCY | 1 cut(s) | 620 |
| Psp124BI | GAGCTC | 4 cut(s) | 360, 537, 993, 1296 |
| Psp5II | RGGWCCY | 1 cut(s) | 620 |
| Psp6I | CCWGG | 1 cut(s) | 901 |
| PspGI | CCWGG | 1 cut(s) | 901 |
| PspN4I | GGNNCC | 3 cut(s) | 249, 621, 754 |
| PspPI | GGNCC | 3 cut(s) | 325, 505, 620 |
| PspPPI | RGGWCCY | 1 cut(s) | 620 |
| PstI | CTGCAG | 2 cut(s) | 94, 1291 |
| PstNI | CAGNNNCTG | 1 cut(s) | 400 |
| PsuI | RGATCY | 3 cut(s) | 79, 175, 752 |
| PvuII | CAGCTG | 1 cut(s) | 400 |
| RsaI | GTAC | 3 cut(s) | 11, 428, 778 |
| RsaNI | GTAC | 3 cut(s) | 10, 427, 777 |
| RseI | CAYNNNNRTG | 4 cut(s) | 92, 347, 578, 888 |
| SacI | GAGCTC | 4 cut(s) | 360, 537, 993, 1296 |
| SaqAI | TTAA | 3 cut(s) | 128, 501, 728 |
| SatI | GCNGC | 5 cut(s) | 398, 1141, 1230, 1238, 1287 |
| Sau3AI | GATC | 5 cut(s) | 79, 175, 296, 752, 768 |
| Sau96I | GGNCC | 3 cut(s) | 325, 505, 620 |
| ScaI | AGTACT | 1 cut(s) | 428 |
| SchI | GAGTC | 4 cut(s) | 212, 827, 850, 947 |
| ScrFI | CCNGG | 2 cut(s) | 903, 1190 |
| SduI | GDGCHC | 4 cut(s) | 360, 537, 993, 1296 |
| SfaNI | GCATC | 2 cut(s) | 569, 696 |
| SfcI | CTRYAG | 2 cut(s) | 90, 1287 |
| SinI | GGWCC | 1 cut(s) | 620 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 92, 347, 578, 888 |
| SmlI | CTYRAG | 4 cut(s) | 200, 527, 832, 838 |
| SmoI | CTYRAG | 4 cut(s) | 200, 527, 832, 838 |
| SpeI | ACTAGT | 1 cut(s) | 664 |
| SsiI | CCGC | 1 cut(s) | 1172 |
| SspI | AATATT | 1 cut(s) | 1332 |
| SspMI | CTAG | 4 cut(s) | 77, 665, 1040, 1356 |
| SstI | GAGCTC | 4 cut(s) | 360, 537, 993, 1296 |
| StyD4I | CCNGG | 2 cut(s) | 901, 1188 |
| TaaI | ACNGT | 2 cut(s) | 577, 887 |
| TaiI | ACGT | 1 cut(s) | 831 |
| TatI | WGTACW | 1 cut(s) | 426 |
| TfiI | GAWTC | 4 cut(s) | 214, 368, 478, 1006 |
| Tru1I | TTAA | 3 cut(s) | 128, 501, 728 |
| Tru9I | TTAA | 3 cut(s) | 128, 501, 728 |
| TscAI | CASTG | 6 cut(s) | 94, 99, 495, 582, 890, 1327 |
| TseFI | GTSAC | 2 cut(s) | 373, 547 |
| TseI | GCWGC | 5 cut(s) | 397, 1140, 1229, 1237, 1286 |
| Tsp45I | GTSAC | 2 cut(s) | 373, 547 |
| TspDTI | ATGAA | 5 cut(s) | 59, 217, 452, 1022, 1139 |
| TspRI | CASTG | 6 cut(s) | 94, 99, 495, 582, 890, 1327 |
| VpaK11BI | GGWCC | 1 cut(s) | 620 |
| XapI | RAATTY | 1 cut(s) | 670 |
| XbaI | TCTAGA | 1 cut(s) | 76 |
| XspI | CTAG | 4 cut(s) | 77, 665, 1040, 1356 |
| ZrmI | AGTACT | 1 cut(s) | 428 |
| Zsp2I | ATGCAT | 1 cut(s) | 562 |