RING-type E3 ubiquitin transferase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G49810 AT5G65920 AT5G65920 |
| fragaria_vesca | FvH4_1g18010 FvH4_1g18010 FvH4_1g18010 FvH4_2g32810 |
| malus_domestica | MD08G1079800.v1.1 MD15G1066700.v1.1 |
| prunus_persica | Prupe.1G420500_v2.0.a1 Prupe.6G218400_v2.0.a1 |
| pyrus_communis | pycom08g06590 pycom15g06330 |
| rosa_chinensis | RchiOBHm_Chr2g0108501 RchiOBHm_Chr6g0309891 |
| rosa_laevigata | RLG00000010526 RLG00000017673 |
| rosa_multiflora | Rmu_co8433595.1_g000001 Rmu_sc0000294.1_g000001 Rmu_sc0002372.1_g000052 Rmu_sc0009846.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00135090 Rroxscaffold_7G00159070 |
| rosa_rugosa | Rorug02G0153700 Rorug06G0375700.1 |
| rosa_samantha | Rh2AG202600 Rh2BG215500 Rh2CG206700 Rh2DG209800 Rh6AG489500 Rh6BG498900 Rh6CG503700 Rh6DG489900 |
| rosa_wichuraiana | Rw2G016190 Rw6G042600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 679 |
| AclWI | GGATC | 6 cut(s) | 141, 212, 225, 613, 626, 718 |
| AcsI | RAATTY | 2 cut(s) | 63, 628 |
| AcuI | CTGAAG | 3 cut(s) | 158, 162, 504 |
| AfaI | GTAC | 1 cut(s) | 386 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 235, 850, 1026 |
| AgsI | TTSAA | 8 cut(s) | 451, 479, 703, 964, 1039, 1211, 1234, 1258 |
| AjiI | CACGTC | 1 cut(s) | 415 |
| AjnI | CCWGG | 1 cut(s) | 650 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 459, 491 |
| AleI | CACNNNNGTG | 1 cut(s) | 536 |
| Alw21I | GWGCWC | 3 cut(s) | 639, 951, 1254 |
| Alw26I | GTCTC | 3 cut(s) | 713, 793, 869 |
| AlwI | GGATC | 6 cut(s) | 141, 212, 225, 613, 626, 718 |
| Ama87I | CYCGRG | 1 cut(s) | 1019 |
| AoxI | GGCC | 1 cut(s) | 463 |
| ApeKI | GCWGC | 8 cut(s) | 366, 509, 664, 1098, 1187, 1195, 1198, 1244 |
| ApoI | RAATTY | 2 cut(s) | 63, 628 |
| AspLEI | GCGC | 1 cut(s) | 1160 |
| AspS9I | GGNCC | 2 cut(s) | 463, 578 |
| AsuC2I | CCSGG | 2 cut(s) | 861, 957 |
| AsuHPI | GGTGA | 2 cut(s) | 64, 235 |
| AsuII | TTCGAA | 1 cut(s) | 1298 |
| AsuNHI | GCTAGC | 1 cut(s) | 1141 |
| AvaI | CYCGRG | 1 cut(s) | 1019 |
| AvaII | GGWCC | 1 cut(s) | 578 |
| BaeGI | GKGCMC | 1 cut(s) | 288 |
| BamHI | GGATCC | 2 cut(s) | 217, 618 |
| BanII | GRGCYC | 4 cut(s) | 430, 639, 951, 1254 |
| BauI | CACGAG | 1 cut(s) | 968 |
| Bbv12I | GWGCWC | 3 cut(s) | 639, 951, 1254 |
| BbvI | GCAGC | 8 cut(s) | 378, 521, 651, 1085, 1182, 1185, 1199, 1231 |
| BccI | CCATC | 3 cut(s) | 53, 682, 751 |
| BceAI | ACGGC | 1 cut(s) | 581 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 646, 680 |
| BciT130I | CCWGG | 1 cut(s) | 652 |
| BcnI | CCSGG | 2 cut(s) | 861, 957 |
| BcoDI | GTCTC | 3 cut(s) | 713, 793, 869 |
| BfaI | CTAG | 3 cut(s) | 35, 998, 1142 |
| BfuAI | ACCTGC | 1 cut(s) | 679 |
| BglII | AGATCT | 1 cut(s) | 37 |
| BlpI | GCTNAGC | 1 cut(s) | 1248 |
| Bme1390I | CCNGG | 3 cut(s) | 652, 861, 957 |
| Bme18I | GGWCC | 1 cut(s) | 578 |
| BmeT110I | CYCGRG | 1 cut(s) | 1019 |
| BmgBI | CACGTC | 1 cut(s) | 415 |
| BmgT120I | GGNCC | 2 cut(s) | 463, 578 |
| BmiI | GGNNCC | 4 cut(s) | 207, 219, 579, 620 |
| BmrFI | CCNGG | 3 cut(s) | 652, 861, 957 |
| BmrI | ACTGGG | 1 cut(s) | 1056 |
| BmtI | GCTAGC | 1 cut(s) | 1145 |
| BmuI | ACTGGG | 1 cut(s) | 1056 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1087, 1119 |
| BpmI | CTGGAG | 1 cut(s) | 179 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1248 |
| Bpu14I | TTCGAA | 1 cut(s) | 1298 |
| BpuEI | CTTGAG | 5 cut(s) | 452, 470, 775, 817, 860 |
| BpuMI | CCSGG | 2 cut(s) | 861, 957 |
| Bsa29I | ATCGAT | 1 cut(s) | 713 |
| BsaAI | YACGTR | 1 cut(s) | 388 |
| BsaI | GGTCTC | 1 cut(s) | 869 |
| BsaJI | CCNNGG | 1 cut(s) | 1020 |
| BsaWI | WCCGGW | 1 cut(s) | 220 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 93, 123, 146, 176 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 235, 850, 1026 |
| Bse1I | ACTGG | 1 cut(s) | 1062 |
| BseBI | CCWGG | 1 cut(s) | 652 |
| BseCI | ATCGAT | 1 cut(s) | 713 |
| BseDI | CCNNGG | 1 cut(s) | 1020 |
| BseGI | GGATG | 1 cut(s) | 328 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 235, 850, 1026 |
| BseMII | CTCAG | 5 cut(s) | 652, 880, 1118, 1218, 1239 |
| BseNI | ACTGG | 1 cut(s) | 1062 |
| BseRI | GAGGAG | 2 cut(s) | 167, 1152 |
| BseSI | GKGCMC | 1 cut(s) | 288 |
| BseXI | GCAGC | 8 cut(s) | 378, 521, 651, 1085, 1182, 1185, 1199, 1231 |
| BsgI | GTGCAG | 2 cut(s) | 437, 1084 |
| Bsh1285I | CGRYCG | 1 cut(s) | 407 |
| BshFI | GGCC | 1 cut(s) | 465 |
| BshVI | ATCGAT | 1 cut(s) | 713 |
| BsiEI | CGRYCG | 1 cut(s) | 407 |
| BsiHKAI | GWGCWC | 3 cut(s) | 639, 951, 1254 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1019 |
| BsiSI | CCGG | 3 cut(s) | 221, 861, 957 |
| BslFI | GGGAC | 1 cut(s) | 1032 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 235, 850, 1026 |
| BsmAI | GTCTC | 3 cut(s) | 713, 793, 869 |
| BsmBI | CGTCTC | 2 cut(s) | 713, 793 |
| BsmFI | GGGAC | 1 cut(s) | 1032 |
| BsmI | GAATGC | 1 cut(s) | 1160 |
| BsnI | GGCC | 1 cut(s) | 465 |
| Bso31I | GGTCTC | 1 cut(s) | 869 |
| BsoBI | CYCGRG | 1 cut(s) | 1019 |
| Bsp119I | TTCGAA | 1 cut(s) | 1298 |
| Bsp1286I | GDGCHC | 5 cut(s) | 288, 430, 639, 951, 1254 |
| Bsp143I | GATC | 8 cut(s) | 37, 133, 217, 254, 561, 618, 710, 726 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1248 |
| BspANI | GGCC | 1 cut(s) | 465 |
| BspCNI | CTCAG | 5 cut(s) | 651, 879, 1117, 1219, 1240 |
| BspDI | ATCGAT | 1 cut(s) | 713 |
| BspLI | GGNNCC | 4 cut(s) | 207, 219, 579, 620 |
| BspMI | ACCTGC | 1 cut(s) | 679 |
| BspOI | GCTAGC | 1 cut(s) | 1145 |
| BspPI | GGATC | 6 cut(s) | 141, 212, 225, 613, 626, 718 |
| BspT104I | TTCGAA | 1 cut(s) | 1298 |
| BspTNI | GGTCTC | 1 cut(s) | 869 |
| BsrI | ACTGG | 1 cut(s) | 1062 |
| BssECI | CCNNGG | 1 cut(s) | 1020 |
| BssMI | GATC | 8 cut(s) | 37, 133, 217, 254, 561, 618, 710, 726 |
| BssSI | CACGAG | 1 cut(s) | 968 |
| Bst2BI | CACGAG | 1 cut(s) | 968 |
| Bst2UI | CCWGG | 1 cut(s) | 652 |
| Bst4CI | ACNGT | 1 cut(s) | 535 |
| BstBAI | YACGTR | 1 cut(s) | 388 |
| BstBI | TTCGAA | 1 cut(s) | 1298 |
| BstC8I | GCNNGC | 5 cut(s) | 594, 1032, 1110, 1139, 1143 |
| BstDEI | CTNAG | 7 cut(s) | 494, 525, 638, 866, 1104, 1227, 1248 |
| BstEII | GGTNACC | 1 cut(s) | 223 |
| BstF5I | GGATG | 1 cut(s) | 328 |
| BstHHI | GCGC | 1 cut(s) | 1160 |
| BstKTI | GATC | 8 cut(s) | 40, 136, 220, 257, 564, 621, 713, 729 |
| BstMAI | GTCTC | 3 cut(s) | 713, 793, 869 |
| BstMBI | GATC | 8 cut(s) | 37, 133, 217, 254, 561, 618, 710, 726 |
| BstMCI | CGRYCG | 1 cut(s) | 407 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 78, 515, 1166, 1175, 1184 |
| BstNI | CCWGG | 1 cut(s) | 652 |
| BstNSI | RCATGY | 1 cut(s) | 596 |
| BstPI | GGTNACC | 1 cut(s) | 223 |
| BstSCI | CCNGG | 3 cut(s) | 650, 859, 955 |
| BstSLI | GKGCMC | 1 cut(s) | 288 |
| BstV1I | GCAGC | 8 cut(s) | 378, 521, 651, 1085, 1182, 1185, 1199, 1231 |
| BstX2I | RGATCY | 4 cut(s) | 37, 133, 217, 618 |
| BstYI | RGATCY | 4 cut(s) | 37, 133, 217, 618 |
| Bsu15I | ATCGAT | 1 cut(s) | 713 |
| BsuRI | GGCC | 1 cut(s) | 465 |
| BsuTUI | ATCGAT | 1 cut(s) | 713 |
| BtgZI | GCGATG | 1 cut(s) | 407 |
| BtrI | CACGTC | 1 cut(s) | 415 |
| BtsCI | GGATG | 1 cut(s) | 328 |
| BtsIMutI | CAGTG | 2 cut(s) | 186, 1069 |
| BveI | ACCTGC | 1 cut(s) | 679 |
| Cac8I | GCNNGC | 5 cut(s) | 594, 1032, 1110, 1139, 1143 |
| CfoI | GCGC | 1 cut(s) | 1160 |
| Cfr13I | GGNCC | 2 cut(s) | 463, 578 |
| ClaI | ATCGAT | 1 cut(s) | 713 |
| Csp6I | GTAC | 1 cut(s) | 385 |
| CviAII | CATG | 2 cut(s) | 593, 992 |
| CviQI | GTAC | 1 cut(s) | 385 |
| DdeI | CTNAG | 7 cut(s) | 494, 525, 638, 866, 1104, 1227, 1248 |
| DpnI | GATC | 8 cut(s) | 39, 135, 219, 256, 563, 620, 712, 728 |
| DpnII | GATC | 8 cut(s) | 37, 133, 217, 254, 561, 618, 710, 726 |
| EciI | GGCGGA | 3 cut(s) | 90, 114, 137 |
| Ecl136II | GAGCTC | 3 cut(s) | 637, 949, 1252 |
| Eco24I | GRGCYC | 4 cut(s) | 430, 639, 951, 1254 |
| Eco31I | GGTCTC | 1 cut(s) | 869 |
| Eco47I | GGWCC | 1 cut(s) | 578 |
| Eco53kI | GAGCTC | 3 cut(s) | 637, 949, 1252 |
| Eco57I | CTGAAG | 3 cut(s) | 158, 162, 504 |
| Eco88I | CYCGRG | 1 cut(s) | 1019 |
| Eco91I | GGTNACC | 1 cut(s) | 223 |
| EcoICRI | GAGCTC | 3 cut(s) | 637, 949, 1252 |
| EcoO109I | RGGNCCY | 1 cut(s) | 578 |
| EcoO65I | GGTNACC | 1 cut(s) | 223 |
| EcoRII | CCWGG | 1 cut(s) | 650 |
| EcoT38I | GRGCYC | 4 cut(s) | 430, 639, 951, 1254 |
| Esp3I | CGTCTC | 2 cut(s) | 713, 793 |
| FaeI | CATG | 2 cut(s) | 596, 995 |
| FaiI | YATR | 7 cut(s) | 249, 344, 594, 698, 886, 993, 1278 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1018, 1050 |
| FaqI | GGGAC | 1 cut(s) | 1032 |
| FatI | CATG | 2 cut(s) | 592, 991 |
| FauI | CCCGC | 3 cut(s) | 74, 1117, 1171 |
| FokI | GGATG | 1 cut(s) | 335 |
| FriOI | GRGCYC | 4 cut(s) | 430, 639, 951, 1254 |
| FspBI | CTAG | 3 cut(s) | 35, 998, 1142 |
| GlaI | GCGC | 1 cut(s) | 1159 |
| GsuI | CTGGAG | 1 cut(s) | 179 |
| HaeIII | GGCC | 1 cut(s) | 465 |
| HapII | CCGG | 3 cut(s) | 221, 861, 957 |
| HhaI | GCGC | 1 cut(s) | 1160 |
| Hin1II | CATG | 2 cut(s) | 596, 995 |
| Hin6I | GCGC | 1 cut(s) | 1158 |
| HinP1I | GCGC | 1 cut(s) | 1158 |
| HincII | GTYRAC | 1 cut(s) | 1011 |
| HindII | GTYRAC | 1 cut(s) | 1011 |
| HindIII | AAGCTT | 2 cut(s) | 793, 1307 |
| HpaII | CCGG | 3 cut(s) | 221, 861, 957 |
| HphI | GGTGA | 2 cut(s) | 64, 235 |
| Hpy166II | GTNNAC | 2 cut(s) | 541, 1011 |
| Hpy188I | TCNGA | 8 cut(s) | 138, 243, 409, 561, 607, 646, 781, 1093 |
| Hpy8I | GTNNAC | 2 cut(s) | 541, 1011 |
| HpyAV | CCTTC | 6 cut(s) | 186, 448, 492, 998, 1020, 1078 |
| HpyCH4III | ACNGT | 1 cut(s) | 535 |
| HpyCH4IV | ACGT | 3 cut(s) | 387, 414, 786 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 78, 515, 1166, 1175, 1184 |
| HpyF3I | CTNAG | 7 cut(s) | 494, 525, 638, 866, 1104, 1227, 1248 |
| HpySE526I | ACGT | 3 cut(s) | 387, 414, 786 |
| Hsp92II | CATG | 2 cut(s) | 596, 995 |
| HspAI | GCGC | 1 cut(s) | 1158 |
| Kzo9I | GATC | 8 cut(s) | 37, 133, 217, 254, 561, 618, 710, 726 |
| LmnI | GCTCC | 6 cut(s) | 154, 205, 313, 490, 634, 1165 |
| Lsp1109I | GCAGC | 8 cut(s) | 378, 521, 651, 1085, 1182, 1185, 1199, 1231 |
| MaeI | CTAG | 3 cut(s) | 35, 998, 1142 |
| MaeII | ACGT | 3 cut(s) | 387, 414, 786 |
| MaeIII | GTNAC | 2 cut(s) | 223, 331 |
| MalI | GATC | 8 cut(s) | 39, 135, 219, 256, 563, 620, 712, 728 |
| MboI | GATC | 8 cut(s) | 37, 133, 217, 254, 561, 618, 710, 726 |
| MboII | GAAGA | 5 cut(s) | 151, 154, 409, 463, 736 |
| MfeI | CAATTG | 3 cut(s) | 612, 730, 938 |
| MflI | RGATCY | 4 cut(s) | 37, 133, 217, 618 |
| MhlI | GDGCHC | 5 cut(s) | 288, 430, 639, 951, 1254 |
| MluCI | AATT | 9 cut(s) | 63, 87, 128, 612, 628, 730, 938, 1056, 1273 |
| MlyI | GAGTC | 5 cut(s) | 170, 656, 667, 785, 808 |
| MmeI | TCCRAC | 4 cut(s) | 183, 387, 585, 790 |
| MseI | TTAA | 2 cut(s) | 86, 459 |
| MslI | CAYNNNNRTG | 2 cut(s) | 305, 536 |
| MspA1I | CMGCKG | 2 cut(s) | 358, 369 |
| MspI | CCGG | 3 cut(s) | 221, 861, 957 |
| MspR9I | CCNGG | 3 cut(s) | 652, 861, 957 |
| MunI | CAATTG | 3 cut(s) | 612, 730, 938 |
| Mva1269I | GAATGC | 1 cut(s) | 1160 |
| MvaI | CCWGG | 1 cut(s) | 652 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 78, 515, 1166, 1175, 1184 |
| NciI | CCSGG | 2 cut(s) | 861, 957 |
| NdeII | GATC | 8 cut(s) | 37, 133, 217, 254, 561, 618, 710, 726 |
| NheI | GCTAGC | 1 cut(s) | 1141 |
| NlaIII | CATG | 2 cut(s) | 596, 995 |
| NlaIV | GGNNCC | 4 cut(s) | 207, 219, 579, 620 |
| NmuCI | GTSAC | 2 cut(s) | 223, 331 |
| NspI | RCATGY | 1 cut(s) | 596 |
| NspV | TTCGAA | 1 cut(s) | 1298 |
| OliI | CACNNNNGTG | 1 cut(s) | 536 |
| PaeI | GCATGC | 1 cut(s) | 596 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 719 |
| PctI | GAATGC | 1 cut(s) | 1160 |
| PfeI | GAWTC | 5 cut(s) | 172, 326, 896, 964, 1207 |
| PfoI | TCCNGGA | 1 cut(s) | 650 |
| PleI | GAGTC | 5 cut(s) | 169, 655, 666, 784, 807 |
| PpsI | GAGTC | 5 cut(s) | 169, 655, 666, 784, 807 |
| Ppu21I | YACGTR | 1 cut(s) | 388 |
| PpuMI | RGGWCCY | 1 cut(s) | 578 |
| Psp124BI | GAGCTC | 3 cut(s) | 639, 951, 1254 |
| Psp5II | RGGWCCY | 1 cut(s) | 578 |
| Psp6I | CCWGG | 1 cut(s) | 650 |
| PspEI | GGTNACC | 1 cut(s) | 223 |
| PspGI | CCWGG | 1 cut(s) | 650 |
| PspN4I | GGNNCC | 4 cut(s) | 207, 219, 579, 620 |
| PspPI | GGNCC | 2 cut(s) | 463, 578 |
| PspPPI | RGGWCCY | 1 cut(s) | 578 |
| PsuI | RGATCY | 4 cut(s) | 37, 133, 217, 618 |
| PvuII | CAGCTG | 2 cut(s) | 358, 369 |
| RsaI | GTAC | 1 cut(s) | 386 |
| RsaNI | GTAC | 1 cut(s) | 385 |
| RseI | CAYNNNNRTG | 2 cut(s) | 305, 536 |
| SacI | GAGCTC | 3 cut(s) | 639, 951, 1254 |
| SaqAI | TTAA | 2 cut(s) | 86, 459 |
| Sau3AI | GATC | 8 cut(s) | 37, 133, 217, 254, 561, 618, 710, 726 |
| Sau96I | GGNCC | 2 cut(s) | 463, 578 |
| SchI | GAGTC | 5 cut(s) | 170, 656, 667, 785, 808 |
| ScrFI | CCNGG | 3 cut(s) | 652, 861, 957 |
| SduI | GDGCHC | 5 cut(s) | 288, 430, 639, 951, 1254 |
| SfuI | TTCGAA | 1 cut(s) | 1298 |
| SinI | GGWCC | 1 cut(s) | 578 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 305, 536 |
| SmlI | CTYRAG | 5 cut(s) | 431, 485, 790, 796, 875 |
| SmoI | CTYRAG | 5 cut(s) | 431, 485, 790, 796, 875 |
| SphI | GCATGC | 1 cut(s) | 596 |
| Sse9I | AATT | 9 cut(s) | 63, 87, 128, 612, 628, 730, 938, 1056, 1273 |
| SspMI | CTAG | 3 cut(s) | 35, 998, 1142 |
| SstI | GAGCTC | 3 cut(s) | 639, 951, 1254 |
| StyD4I | CCNGG | 3 cut(s) | 650, 859, 955 |
| TaaI | ACNGT | 1 cut(s) | 535 |
| TaiI | ACGT | 3 cut(s) | 390, 417, 789 |
| TaqI | TCGA | 3 cut(s) | 257, 713, 1298 |
| TaqII | GACCGA | 2 cut(s) | 319, 1108 |
| TasI | AATT | 9 cut(s) | 63, 87, 128, 612, 628, 730, 938, 1056, 1273 |
| TauI | GCSGC | 3 cut(s) | 75, 96, 99 |
| TfiI | GAWTC | 5 cut(s) | 172, 326, 896, 964, 1207 |
| Tru1I | TTAA | 2 cut(s) | 86, 459 |
| Tru9I | TTAA | 2 cut(s) | 86, 459 |
| TscAI | CASTG | 2 cut(s) | 186, 1069 |
| TseFI | GTSAC | 2 cut(s) | 223, 331 |
| TseI | GCWGC | 8 cut(s) | 366, 509, 664, 1098, 1187, 1195, 1198, 1244 |
| Tsp45I | GTSAC | 2 cut(s) | 223, 331 |
| TspDTI | ATGAA | 7 cut(s) | 17, 175, 410, 672, 980, 1097, 1282 |
| TspRI | CASTG | 2 cut(s) | 186, 1069 |
| VpaK11BI | GGWCC | 1 cut(s) | 578 |
| XapI | RAATTY | 2 cut(s) | 63, 628 |
| XbaI | TCTAGA | 2 cut(s) | 34, 997 |
| XceI | RCATGY | 1 cut(s) | 596 |
| XspI | CTAG | 3 cut(s) | 35, 998, 1142 |