pycom08g06590

RING-type E3 ubiquitin transferase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
Physical Location & Seq
Reverse (-)
5137690 .. 5139018
1329 bp
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UTR
Exon/CDS
Intron
pycom08g06590.1

Sequence Viewer

Length: 1329 bp
ATGAAGTTTGATGCAGGAAGTGGTGGGCAAGTTCTAGATCTGGAAACTGCGGTGAAAGATGGAATTTTGGGCGGCGGAGGCGGGTTAATTTGCGGCGGCGGAGTTGGTGTTGGTGTTGTGGCGGATAAATTGGATCTGAAGAAGATGATTGAGGAGCTGGAGTCCATTGAGATTCCTTCAGTGTTCATCTGCCCGATTTCGTTGGAGCCAATGCAGGATCCGGTGACCCTTTGCACGGGTCAGACCTATGAGAGATCGAACATTCTCAAATGGTTCTCTTTGGGGCACTTTACTTGCCCCACAACAATGCAGGAGCTTTGGGATGATTCGGTCACGCCAAATATGACCCTCCACCAGCTGATTTGCAGCTGGTTTTCGCAGAAGTACGTGGCGATGAAGAAGCGGTCGGAGGACGTGCAGGGGAGGGCTCTTGAGATTTTGGACACATTGAAGAAGGTTAAGGGCCAAGCCAGAGTTCAAGCTCTCAAGGAGCTAAGAAGGGTAGTGGCAGCTCACGCTTCAGCTAAGAACACGGTGGTGGACAATGGGGGTGTTGCTCTGATCTCCTTTCTGTTGGGTCCTTTCACTTCGCATGCCGTTGGGTCGGAAGCAATTGGGATCCTTGTGAATTTGGAGCTCAGTTCAGAGTCCAGGACGAGTCTGCTGCAACCTGCAAAGGTTTCATTGATGGTTGATATGTTGAACGAGGGATCGATTGAGACGAAGATCAATTGCACGAAGTTGATTGAGGTTTTGATGGAGGGCAAGGATTTGGAGTCCGAAAACGTCTCAAGCTTGAGTCTTGTGGTTGGATTGTTGAGATTGGTCAAGGATAAAAGAAACCCTAATGGGGTTTTGCCCGGTCTCAGTTTGCTCAAGACAATATGTTCCCACGAATCAGTCAGGAACTCGGTTGTCAGCGTTGGGGCAGTTCCTCAATTGATTGAGCTCTTACCCGGTTTGAATCACGAGTGTTTGGAGGTAGCCCTTCATGTTCTAGAAGTTTTGTCAACACTTCCCGAGGGAAGGCAGGCTTTGAAAGATTGTCCCAAGACAATTCCCAGTGTAGTTAGACTACTGATGAAGGTTTCAGAGAGCTGCACTCAGCCCGCATTGTCGGTCTTGTGGGCGGTTTGCAAGCTAGCACCAGACGAATGCGCTCCTCTTGCGGTAGAGGCGGGTTTGGCAGCCAAGCTGCTGCTTGTGATTCAAAGTGGTTGCAATCCTGAGTTGAAGCAAAGAGCTGCTGAGCTCTTGAAGTTGTGTAGTCTAAATTATACCGCTACACATTTCATTTCGAAGTGTAAGCTTACCAGAACAATACAATGA

Protein Analysis

443

Amino Acids

47.58

Weight (kDa)

6.28

Isoelectric Point (pI)

43.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
U-box PF04564 58 - 128 3e-15 U-box domain
ARM_PUB PF25598 146 - 442 1.4e-88 Plant U-box protein ARM repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 679
AclWI GGATC 6 cut(s) 141, 212, 225, 613, 626, 718
AcsI RAATTY 2 cut(s) 63, 628
AcuI CTGAAG 3 cut(s) 158, 162, 504
AfaI GTAC 1 cut(s) 386
AfiI CCNNNNNNNGG 3 cut(s) 235, 850, 1026
AgsI TTSAA 8 cut(s) 451, 479, 703, 964, 1039, 1211, 1234, 1258
AjiI CACGTC 1 cut(s) 415
AjnI CCWGG 1 cut(s) 650
AjuI GAANNNNNNNTTGG 2 cut(s) 459, 491
AleI CACNNNNGTG 1 cut(s) 536
Alw21I GWGCWC 3 cut(s) 639, 951, 1254
Alw26I GTCTC 3 cut(s) 713, 793, 869
AlwI GGATC 6 cut(s) 141, 212, 225, 613, 626, 718
Ama87I CYCGRG 1 cut(s) 1019
AoxI GGCC 1 cut(s) 463
ApeKI GCWGC 8 cut(s) 366, 509, 664, 1098, 1187, 1195, 1198, 1244
ApoI RAATTY 2 cut(s) 63, 628
AspLEI GCGC 1 cut(s) 1160
AspS9I GGNCC 2 cut(s) 463, 578
AsuC2I CCSGG 2 cut(s) 861, 957
AsuHPI GGTGA 2 cut(s) 64, 235
AsuII TTCGAA 1 cut(s) 1298
AsuNHI GCTAGC 1 cut(s) 1141
AvaI CYCGRG 1 cut(s) 1019
AvaII GGWCC 1 cut(s) 578
BaeGI GKGCMC 1 cut(s) 288
BamHI GGATCC 2 cut(s) 217, 618
BanII GRGCYC 4 cut(s) 430, 639, 951, 1254
BauI CACGAG 1 cut(s) 968
Bbv12I GWGCWC 3 cut(s) 639, 951, 1254
BbvI GCAGC 8 cut(s) 378, 521, 651, 1085, 1182, 1185, 1199, 1231
BccI CCATC 3 cut(s) 53, 682, 751
BceAI ACGGC 1 cut(s) 581
BcgI CGANNNNNNTGC 2 cut(s) 646, 680
BciT130I CCWGG 1 cut(s) 652
BcnI CCSGG 2 cut(s) 861, 957
BcoDI GTCTC 3 cut(s) 713, 793, 869
BfaI CTAG 3 cut(s) 35, 998, 1142
BfuAI ACCTGC 1 cut(s) 679
BglII AGATCT 1 cut(s) 37
BlpI GCTNAGC 1 cut(s) 1248
Bme1390I CCNGG 3 cut(s) 652, 861, 957
Bme18I GGWCC 1 cut(s) 578
BmeT110I CYCGRG 1 cut(s) 1019
BmgBI CACGTC 1 cut(s) 415
BmgT120I GGNCC 2 cut(s) 463, 578
BmiI GGNNCC 4 cut(s) 207, 219, 579, 620
BmrFI CCNGG 3 cut(s) 652, 861, 957
BmrI ACTGGG 1 cut(s) 1056
BmtI GCTAGC 1 cut(s) 1145
BmuI ACTGGG 1 cut(s) 1056
BplI GAGNNNNNCTC 2 cut(s) 1087, 1119
BpmI CTGGAG 1 cut(s) 179
Bpu1102I GCTNAGC 1 cut(s) 1248
Bpu14I TTCGAA 1 cut(s) 1298
BpuEI CTTGAG 5 cut(s) 452, 470, 775, 817, 860
BpuMI CCSGG 2 cut(s) 861, 957
Bsa29I ATCGAT 1 cut(s) 713
BsaAI YACGTR 1 cut(s) 388
BsaI GGTCTC 1 cut(s) 869
BsaJI CCNNGG 1 cut(s) 1020
BsaWI WCCGGW 1 cut(s) 220
BsaXI ACNNNNNCTCC 4 cut(s) 93, 123, 146, 176
Bsc4I CCNNNNNNNGG 3 cut(s) 235, 850, 1026
Bse1I ACTGG 1 cut(s) 1062
BseBI CCWGG 1 cut(s) 652
BseCI ATCGAT 1 cut(s) 713
BseDI CCNNGG 1 cut(s) 1020
BseGI GGATG 1 cut(s) 328
BseLI CCNNNNNNNGG 3 cut(s) 235, 850, 1026
BseMII CTCAG 5 cut(s) 652, 880, 1118, 1218, 1239
BseNI ACTGG 1 cut(s) 1062
BseRI GAGGAG 2 cut(s) 167, 1152
BseSI GKGCMC 1 cut(s) 288
BseXI GCAGC 8 cut(s) 378, 521, 651, 1085, 1182, 1185, 1199, 1231
BsgI GTGCAG 2 cut(s) 437, 1084
Bsh1285I CGRYCG 1 cut(s) 407
BshFI GGCC 1 cut(s) 465
BshVI ATCGAT 1 cut(s) 713
BsiEI CGRYCG 1 cut(s) 407
BsiHKAI GWGCWC 3 cut(s) 639, 951, 1254
BsiHKCI CYCGRG 1 cut(s) 1019
BsiSI CCGG 3 cut(s) 221, 861, 957
BslFI GGGAC 1 cut(s) 1032
BslI CCNNNNNNNGG 3 cut(s) 235, 850, 1026
BsmAI GTCTC 3 cut(s) 713, 793, 869
BsmBI CGTCTC 2 cut(s) 713, 793
BsmFI GGGAC 1 cut(s) 1032
BsmI GAATGC 1 cut(s) 1160
BsnI GGCC 1 cut(s) 465
Bso31I GGTCTC 1 cut(s) 869
BsoBI CYCGRG 1 cut(s) 1019
Bsp119I TTCGAA 1 cut(s) 1298
Bsp1286I GDGCHC 5 cut(s) 288, 430, 639, 951, 1254
Bsp143I GATC 8 cut(s) 37, 133, 217, 254, 561, 618, 710, 726
Bsp1720I GCTNAGC 1 cut(s) 1248
BspANI GGCC 1 cut(s) 465
BspCNI CTCAG 5 cut(s) 651, 879, 1117, 1219, 1240
BspDI ATCGAT 1 cut(s) 713
BspLI GGNNCC 4 cut(s) 207, 219, 579, 620
BspMI ACCTGC 1 cut(s) 679
BspOI GCTAGC 1 cut(s) 1145
BspPI GGATC 6 cut(s) 141, 212, 225, 613, 626, 718
BspT104I TTCGAA 1 cut(s) 1298
BspTNI GGTCTC 1 cut(s) 869
BsrI ACTGG 1 cut(s) 1062
BssECI CCNNGG 1 cut(s) 1020
BssMI GATC 8 cut(s) 37, 133, 217, 254, 561, 618, 710, 726
BssSI CACGAG 1 cut(s) 968
Bst2BI CACGAG 1 cut(s) 968
Bst2UI CCWGG 1 cut(s) 652
Bst4CI ACNGT 1 cut(s) 535
BstBAI YACGTR 1 cut(s) 388
BstBI TTCGAA 1 cut(s) 1298
BstC8I GCNNGC 5 cut(s) 594, 1032, 1110, 1139, 1143
BstDEI CTNAG 7 cut(s) 494, 525, 638, 866, 1104, 1227, 1248
BstEII GGTNACC 1 cut(s) 223
BstF5I GGATG 1 cut(s) 328
BstHHI GCGC 1 cut(s) 1160
BstKTI GATC 8 cut(s) 40, 136, 220, 257, 564, 621, 713, 729
BstMAI GTCTC 3 cut(s) 713, 793, 869
BstMBI GATC 8 cut(s) 37, 133, 217, 254, 561, 618, 710, 726
BstMCI CGRYCG 1 cut(s) 407
BstMWI GCNNNNNNNGC 5 cut(s) 78, 515, 1166, 1175, 1184
BstNI CCWGG 1 cut(s) 652
BstNSI RCATGY 1 cut(s) 596
BstPI GGTNACC 1 cut(s) 223
BstSCI CCNGG 3 cut(s) 650, 859, 955
BstSLI GKGCMC 1 cut(s) 288
BstV1I GCAGC 8 cut(s) 378, 521, 651, 1085, 1182, 1185, 1199, 1231
BstX2I RGATCY 4 cut(s) 37, 133, 217, 618
BstYI RGATCY 4 cut(s) 37, 133, 217, 618
Bsu15I ATCGAT 1 cut(s) 713
BsuRI GGCC 1 cut(s) 465
BsuTUI ATCGAT 1 cut(s) 713
BtgZI GCGATG 1 cut(s) 407
BtrI CACGTC 1 cut(s) 415
BtsCI GGATG 1 cut(s) 328
BtsIMutI CAGTG 2 cut(s) 186, 1069
BveI ACCTGC 1 cut(s) 679
Cac8I GCNNGC 5 cut(s) 594, 1032, 1110, 1139, 1143
CfoI GCGC 1 cut(s) 1160
Cfr13I GGNCC 2 cut(s) 463, 578
ClaI ATCGAT 1 cut(s) 713
Csp6I GTAC 1 cut(s) 385
CviAII CATG 2 cut(s) 593, 992
CviQI GTAC 1 cut(s) 385
DdeI CTNAG 7 cut(s) 494, 525, 638, 866, 1104, 1227, 1248
DpnI GATC 8 cut(s) 39, 135, 219, 256, 563, 620, 712, 728
DpnII GATC 8 cut(s) 37, 133, 217, 254, 561, 618, 710, 726
EciI GGCGGA 3 cut(s) 90, 114, 137
Ecl136II GAGCTC 3 cut(s) 637, 949, 1252
Eco24I GRGCYC 4 cut(s) 430, 639, 951, 1254
Eco31I GGTCTC 1 cut(s) 869
Eco47I GGWCC 1 cut(s) 578
Eco53kI GAGCTC 3 cut(s) 637, 949, 1252
Eco57I CTGAAG 3 cut(s) 158, 162, 504
Eco88I CYCGRG 1 cut(s) 1019
Eco91I GGTNACC 1 cut(s) 223
EcoICRI GAGCTC 3 cut(s) 637, 949, 1252
EcoO109I RGGNCCY 1 cut(s) 578
EcoO65I GGTNACC 1 cut(s) 223
EcoRII CCWGG 1 cut(s) 650
EcoT38I GRGCYC 4 cut(s) 430, 639, 951, 1254
Esp3I CGTCTC 2 cut(s) 713, 793
FaeI CATG 2 cut(s) 596, 995
FaiI YATR 7 cut(s) 249, 344, 594, 698, 886, 993, 1278
FalI AAGNNNNNCTT 2 cut(s) 1018, 1050
FaqI GGGAC 1 cut(s) 1032
FatI CATG 2 cut(s) 592, 991
FauI CCCGC 3 cut(s) 74, 1117, 1171
FokI GGATG 1 cut(s) 335
FriOI GRGCYC 4 cut(s) 430, 639, 951, 1254
FspBI CTAG 3 cut(s) 35, 998, 1142
GlaI GCGC 1 cut(s) 1159
GsuI CTGGAG 1 cut(s) 179
HaeIII GGCC 1 cut(s) 465
HapII CCGG 3 cut(s) 221, 861, 957
HhaI GCGC 1 cut(s) 1160
Hin1II CATG 2 cut(s) 596, 995
Hin6I GCGC 1 cut(s) 1158
HinP1I GCGC 1 cut(s) 1158
HincII GTYRAC 1 cut(s) 1011
HindII GTYRAC 1 cut(s) 1011
HindIII AAGCTT 2 cut(s) 793, 1307
HpaII CCGG 3 cut(s) 221, 861, 957
HphI GGTGA 2 cut(s) 64, 235
Hpy166II GTNNAC 2 cut(s) 541, 1011
Hpy188I TCNGA 8 cut(s) 138, 243, 409, 561, 607, 646, 781, 1093
Hpy8I GTNNAC 2 cut(s) 541, 1011
HpyAV CCTTC 6 cut(s) 186, 448, 492, 998, 1020, 1078
HpyCH4III ACNGT 1 cut(s) 535
HpyCH4IV ACGT 3 cut(s) 387, 414, 786
HpyF10VI GCNNNNNNNGC 5 cut(s) 78, 515, 1166, 1175, 1184
HpyF3I CTNAG 7 cut(s) 494, 525, 638, 866, 1104, 1227, 1248
HpySE526I ACGT 3 cut(s) 387, 414, 786
Hsp92II CATG 2 cut(s) 596, 995
HspAI GCGC 1 cut(s) 1158
Kzo9I GATC 8 cut(s) 37, 133, 217, 254, 561, 618, 710, 726
LmnI GCTCC 6 cut(s) 154, 205, 313, 490, 634, 1165
Lsp1109I GCAGC 8 cut(s) 378, 521, 651, 1085, 1182, 1185, 1199, 1231
MaeI CTAG 3 cut(s) 35, 998, 1142
MaeII ACGT 3 cut(s) 387, 414, 786
MaeIII GTNAC 2 cut(s) 223, 331
MalI GATC 8 cut(s) 39, 135, 219, 256, 563, 620, 712, 728
MboI GATC 8 cut(s) 37, 133, 217, 254, 561, 618, 710, 726
MboII GAAGA 5 cut(s) 151, 154, 409, 463, 736
MfeI CAATTG 3 cut(s) 612, 730, 938
MflI RGATCY 4 cut(s) 37, 133, 217, 618
MhlI GDGCHC 5 cut(s) 288, 430, 639, 951, 1254
MluCI AATT 9 cut(s) 63, 87, 128, 612, 628, 730, 938, 1056, 1273
MlyI GAGTC 5 cut(s) 170, 656, 667, 785, 808
MmeI TCCRAC 4 cut(s) 183, 387, 585, 790
MseI TTAA 2 cut(s) 86, 459
MslI CAYNNNNRTG 2 cut(s) 305, 536
MspA1I CMGCKG 2 cut(s) 358, 369
MspI CCGG 3 cut(s) 221, 861, 957
MspR9I CCNGG 3 cut(s) 652, 861, 957
MunI CAATTG 3 cut(s) 612, 730, 938
Mva1269I GAATGC 1 cut(s) 1160
MvaI CCWGG 1 cut(s) 652
MwoI GCNNNNNNNGC 5 cut(s) 78, 515, 1166, 1175, 1184
NciI CCSGG 2 cut(s) 861, 957
NdeII GATC 8 cut(s) 37, 133, 217, 254, 561, 618, 710, 726
NheI GCTAGC 1 cut(s) 1141
NlaIII CATG 2 cut(s) 596, 995
NlaIV GGNNCC 4 cut(s) 207, 219, 579, 620
NmuCI GTSAC 2 cut(s) 223, 331
NspI RCATGY 1 cut(s) 596
NspV TTCGAA 1 cut(s) 1298
OliI CACNNNNGTG 1 cut(s) 536
PaeI GCATGC 1 cut(s) 596
PcsI WCGNNNNNNNCGW 1 cut(s) 719
PctI GAATGC 1 cut(s) 1160
PfeI GAWTC 5 cut(s) 172, 326, 896, 964, 1207
PfoI TCCNGGA 1 cut(s) 650
PleI GAGTC 5 cut(s) 169, 655, 666, 784, 807
PpsI GAGTC 5 cut(s) 169, 655, 666, 784, 807
Ppu21I YACGTR 1 cut(s) 388
PpuMI RGGWCCY 1 cut(s) 578
Psp124BI GAGCTC 3 cut(s) 639, 951, 1254
Psp5II RGGWCCY 1 cut(s) 578
Psp6I CCWGG 1 cut(s) 650
PspEI GGTNACC 1 cut(s) 223
PspGI CCWGG 1 cut(s) 650
PspN4I GGNNCC 4 cut(s) 207, 219, 579, 620
PspPI GGNCC 2 cut(s) 463, 578
PspPPI RGGWCCY 1 cut(s) 578
PsuI RGATCY 4 cut(s) 37, 133, 217, 618
PvuII CAGCTG 2 cut(s) 358, 369
RsaI GTAC 1 cut(s) 386
RsaNI GTAC 1 cut(s) 385
RseI CAYNNNNRTG 2 cut(s) 305, 536
SacI GAGCTC 3 cut(s) 639, 951, 1254
SaqAI TTAA 2 cut(s) 86, 459
Sau3AI GATC 8 cut(s) 37, 133, 217, 254, 561, 618, 710, 726
Sau96I GGNCC 2 cut(s) 463, 578
SchI GAGTC 5 cut(s) 170, 656, 667, 785, 808
ScrFI CCNGG 3 cut(s) 652, 861, 957
SduI GDGCHC 5 cut(s) 288, 430, 639, 951, 1254
SfuI TTCGAA 1 cut(s) 1298
SinI GGWCC 1 cut(s) 578
SmiMI CAYNNNNRTG 2 cut(s) 305, 536
SmlI CTYRAG 5 cut(s) 431, 485, 790, 796, 875
SmoI CTYRAG 5 cut(s) 431, 485, 790, 796, 875
SphI GCATGC 1 cut(s) 596
Sse9I AATT 9 cut(s) 63, 87, 128, 612, 628, 730, 938, 1056, 1273
SspMI CTAG 3 cut(s) 35, 998, 1142
SstI GAGCTC 3 cut(s) 639, 951, 1254
StyD4I CCNGG 3 cut(s) 650, 859, 955
TaaI ACNGT 1 cut(s) 535
TaiI ACGT 3 cut(s) 390, 417, 789
TaqI TCGA 3 cut(s) 257, 713, 1298
TaqII GACCGA 2 cut(s) 319, 1108
TasI AATT 9 cut(s) 63, 87, 128, 612, 628, 730, 938, 1056, 1273
TauI GCSGC 3 cut(s) 75, 96, 99
TfiI GAWTC 5 cut(s) 172, 326, 896, 964, 1207
Tru1I TTAA 2 cut(s) 86, 459
Tru9I TTAA 2 cut(s) 86, 459
TscAI CASTG 2 cut(s) 186, 1069
TseFI GTSAC 2 cut(s) 223, 331
TseI GCWGC 8 cut(s) 366, 509, 664, 1098, 1187, 1195, 1198, 1244
Tsp45I GTSAC 2 cut(s) 223, 331
TspDTI ATGAA 7 cut(s) 17, 175, 410, 672, 980, 1097, 1282
TspRI CASTG 2 cut(s) 186, 1069
VpaK11BI GGWCC 1 cut(s) 578
XapI RAATTY 2 cut(s) 63, 628
XbaI TCTAGA 2 cut(s) 34, 997
XceI RCATGY 1 cut(s) 596
XspI CTAG 3 cut(s) 35, 998, 1142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.