Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003631

Physical Location & Seq

Genomic Coordinates Reverse (-)

26363709 .. 26366065

Gene Structure 2357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G65920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1335 bp

ATGCCAATGTTTCAGCCTTCTAAGAACGGTGGGTTTGATGGGCATATCTTAGATCTACACTCGGCGGTTAAAGACGGTGTTCTTGGCGGCGGAGATGGGAAATTTCTGGTGGTTGTTACCGATGAGAAGAAGAAATTGGATTTGAAGGAGATGATTTCTGAGCTGGAATTACCTGAAATACCCTCTGTTTTCATCTGTCCTATCTCTCTAGAGCCGATGCAAGATCCAGTGACCTTGTGTACTGGTCAAACCTACGAGAGGTCCAACATTCTCAAATGGTTCAATATAGGGCATTGTACTTGCCCAACGACGATGCAAGAGCTTTGGGATGATTTGGTCACTCCTAACAAGACTCTTCACCAATTGATCTACACTTGGTTTTCACAGAAGTATGTTTTGATGAAGAAACGATCTGAAGATGTGCAAGGACGTGCTATTGAGATTCTGGGTACGTTGAGAAAGGCTAAAGGGAAAGCAAAGGTTCATGCTTTAAGCGAGCTTAAGCAAGTTGTGATGGCTCACGCTATTGCTAAGAAGACTGTTGTTGATGAAGGTGGAGTCTTTGTGATCTCTTCTCTTTTAAGTCCTTTTACTTCTCACGCTGTTGGATCTGAGGCTATAGCTATTCTTGTTAATCTTGAGCTTGACTCTGATTCCAAAGCTGGATTGATGCAACCAGCTAGGGTCTCGTTGATGGTTGATATGTTGAATGATGGTTCGATTGAAACTAAGATCAATTGTGCTAGATTGATTGGAAGGTTGGTGGAGGAGAAAGGTTTTAGAGCAGAGCTTGTTTCTAGTCATAGTTTGCTTGTTGGATTAATGAGATTGGTTAAAGATAGGAGACGAAGAAACGGCGTTTCGCCTGCGTTAACGCTGCTCAAATCGGTTTCTGTTCATAAACAAGTTAGGAACTTGTTGGTTAGGATTGGTGCAGTTCCTCAATTGGTTGATGTTTTGCCATGTTTGGATGTGGAGTGTTTAGAGTCAGCTCTTTTCGTGTTGGATTCGTTATGTTTAGAAAGCGAAGGCAGAATTGCTTTGAAAGATTCGGTTAACACGATTCCGCATACCGTTAGGTTACTGATGAAGGTATCAGAGAAATGCACAAACTATGCGATATCGATTCTTTGGTCAGTTTGCAAATTAGCTTCTGAAGAATGTTCATCTCTTGCTGTTGAAGTTGGTTTGGCTGCAAAGCTTTTGCTTGTGATACAAAGTGGATGTGATCCAGCTTTGAAGCAACGTTCAGCTGAGCTATTGAAGTTATGTAGTCTACATTATTCAGACTCAATGTTTATCTCCAAATGTAAACTCACAAGAACTATCCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0033554 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0047484 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0050896 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071214 GO:0071470 GO:0071472 GO:0071704 GO:0080134 GO:0104004 GO:0140096 GO:1901000 GO:1901001 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

U-box

Protein Analysis

444

Amino Acids

48.87

Weight (kDa)

8.3

Isoelectric Point (pI)

50.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
U-box	PF04564	60 - 130	2.1e-15	U-box domain
ARM_PUB	PF25598	151 - 444	3.4e-91	Plant U-box protein ARM repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003631)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49810 AT5G65920 AT5G65920
fragaria_vesca	FvH4_1g18010 FvH4_1g18010 FvH4_1g18010 FvH4_2g32810
malus_domestica	MD08G1079800.v1.1 MD15G1066700.v1.1
prunus_persica	Prupe.1G420500_v2.0.a1 Prupe.6G218400_v2.0.a1
pyrus_communis	pycom08g06590 pycom15g06330
rosa_chinensis	RchiOBHm_Chr2g0108501 RchiOBHm_Chr6g0309891
rosa_laevigata	RLG00000010526 RLG00000017673
rosa_multiflora	Rmu_co8433595.1_g000001 Rmu_sc0000294.1_g000001 Rmu_sc0002372.1_g000052 Rmu_sc0009846.1_g000001
rosa_roxburghii	Rroxscaffold_2G00135090 Rroxscaffold_7G00159070
rosa_rugosa	Rorug02G0153700 Rorug06G0375700.1
rosa_samantha	Rh2AG202600 Rh2BG215500 Rh2CG206700 Rh2DG209800 Rh6AG489500 Rh6BG498900 Rh6CG503700 Rh6DG489900
rosa_wichuraiana	Rw2G016190 Rw6G042600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1276
AciI	CCGC	4 cut(s)	65, 87, 90, 1067
AclI	AACGTT	1 cut(s)	1246
AclWI	GGATC	3 cut(s)	218, 616, 1223
AcsI	RAATTY	1 cut(s)	101
AcuI	CTGAAG	2 cut(s)	435, 1176
AfaI	GTAC	3 cut(s)	241, 298, 451
AfiI	CCNNNNNNNGG	1 cut(s)	258
AflII	CTTAAG	1 cut(s)	500
AgsI	TTSAA	8 cut(s)	145, 283, 709, 725, 1045, 1181, 1240, 1264
AjiI	CACGTC	1 cut(s)	431
AjuI	GAANNNNNNNTTGG	2 cut(s)	119, 151
Alw26I	GTCTC	2 cut(s)	691, 838
AlwI	GGATC	3 cut(s)	218, 616, 1223
ApeKI	GCWGC	2 cut(s)	877, 1193
ApoI	RAATTY	1 cut(s)	101
AseI	ATTAAT	1 cut(s)	821
AspS9I	GGNCC	1 cut(s)	261
AsuHPI	GGTGA	1 cut(s)	350
AvaII	GGWCC	1 cut(s)	261
BbsI	GAAGAC	1 cut(s)	542
BbvI	GCAGC	2 cut(s)	864, 1180
BccI	CCATC	5 cut(s)	32, 89, 508, 688, 707
BceAI	ACGGC	1 cut(s)	871
BcoDI	GTCTC	2 cut(s)	691, 838
BfaI	CTAG	4 cut(s)	209, 681, 744, 798
BfmI	CTRYAG	1 cut(s)	618
BfrI	CTTAAG	1 cut(s)	500
BglII	AGATCT	1 cut(s)	52
BisI	GCNGC	3 cut(s)	88, 878, 1194
BlpI	GCTNAGC	1 cut(s)	1254
BlsI	GCNGC	3 cut(s)	89, 879, 1195
Bme18I	GGWCC	1 cut(s)	261
BmgBI	CACGTC	1 cut(s)	431
BmgT120I	GGNCC	1 cut(s)	261
BmsI	GCATC	3 cut(s)	207, 303, 660
BpiI	GAAGAC	1 cut(s)	542
BplI	GAGNNNNNCTC	2 cut(s)	632, 664
Bpu1102I	GCTNAGC	1 cut(s)	1254
BpuEI	CTTGAG	1 cut(s)	659
Bsa29I	ATCGAT	1 cut(s)	1124
BsaI	GGTCTC	1 cut(s)	691
BsaXI	ACNNNNNCTCC	2 cut(s)	549, 579
Bsc4I	CCNNNNNNNGG	1 cut(s)	258
Bse1I	ACTGG	2 cut(s)	227, 247
BseCI	ATCGAT	1 cut(s)	1124
BseGI	GGATG	3 cut(s)	334, 976, 1229
BseLI	CCNNNNNNNGG	1 cut(s)	258
BseMII	CTCAG	3 cut(s)	150, 603, 1245
BseNI	ACTGG	2 cut(s)	227, 247
BseRI	GAGGAG	1 cut(s)	782
BseXI	GCAGC	2 cut(s)	864, 1180
BsgI	GTGCAG	1 cut(s)	954
BshVI	ATCGAT	1 cut(s)	1124
BslI	CCNNNNNNNGG	1 cut(s)	258
BsmAI	GTCTC	2 cut(s)	691, 838
BsmBI	CGTCTC	1 cut(s)	838
Bso31I	GGTCTC	1 cut(s)	691
Bsp143I	GATC	8 cut(s)	52, 223, 366, 410, 567, 608, 732, 1228
Bsp1720I	GCTNAGC	1 cut(s)	1254
BspACI	CCGC	4 cut(s)	65, 87, 90, 1067
BspCNI	CTCAG	3 cut(s)	151, 604, 1246
BspDI	ATCGAT	1 cut(s)	1124
BspPI	GGATC	3 cut(s)	218, 616, 1223
BspTI	CTTAAG	1 cut(s)	500
BspTNI	GGTCTC	1 cut(s)	691
BsrI	ACTGG	2 cut(s)	227, 247
BssMI	GATC	8 cut(s)	52, 223, 366, 410, 567, 608, 732, 1228
Bst4CI	ACNGT	4 cut(s)	29, 77, 541, 1075
Bst6I	CTCTTC	2 cut(s)	360, 577
BstAFI	CTTAAG	1 cut(s)	500
BstC8I	GCNNGC	2 cut(s)	497, 867
BstDEI	CTNAG	7 cut(s)	21, 49, 159, 531, 612, 729, 1254
BstENI	CCTNNNNNAGG	1 cut(s)	256
BstF5I	GGATG	3 cut(s)	334, 976, 1229
BstKTI	GATC	8 cut(s)	55, 226, 369, 413, 570, 611, 735, 1231
BstMAI	GTCTC	2 cut(s)	691, 838
BstMBI	GATC	8 cut(s)	52, 223, 366, 410, 567, 608, 732, 1228
BstSFI	CTRYAG	1 cut(s)	618
BstV1I	GCAGC	2 cut(s)	864, 1180
BstV2I	GAAGAC	1 cut(s)	542
BstX2I	RGATCY	3 cut(s)	52, 223, 608
BstYI	RGATCY	3 cut(s)	52, 223, 608
Bsu15I	ATCGAT	1 cut(s)	1124
BsuTUI	ATCGAT	1 cut(s)	1124
BtrI	CACGTC	1 cut(s)	431
BtsCI	GGATG	3 cut(s)	334, 976, 1229
BtsIMutI	CAGTG	1 cut(s)	234
Cac8I	GCNNGC	2 cut(s)	497, 867
Cfr13I	GGNCC	1 cut(s)	261
ClaI	ATCGAT	1 cut(s)	1124
Csp6I	GTAC	3 cut(s)	240, 297, 450
CviAII	CATG	2 cut(s)	485, 963
CviQI	GTAC	3 cut(s)	240, 297, 450
DdeI	CTNAG	7 cut(s)	21, 49, 159, 531, 612, 729, 1254
DpnI	GATC	8 cut(s)	54, 225, 368, 412, 569, 610, 734, 1230
DpnII	GATC	8 cut(s)	52, 223, 366, 410, 567, 608, 732, 1228
Eam1104I	CTCTTC	2 cut(s)	360, 577
EarI	CTCTTC	2 cut(s)	360, 577
EciI	GGCGGA	1 cut(s)	105
Eco31I	GGTCTC	1 cut(s)	691
Eco32I	GATATC	1 cut(s)	1122
Eco47I	GGWCC	1 cut(s)	261
Eco57I	CTGAAG	2 cut(s)	435, 1176
EcoNI	CCTNNNNNAGG	1 cut(s)	256
EcoRV	GATATC	1 cut(s)	1122
Esp3I	CGTCTC	1 cut(s)	838
FaeI	CATG	2 cut(s)	488, 966
FatI	CATG	2 cut(s)	484, 962
FblI	GTMKAC	1 cut(s)	1276
Fnu4HI	GCNGC	3 cut(s)	88, 878, 1194
FokI	GGATG	3 cut(s)	341, 983, 1236
Fsp4HI	GCNGC	3 cut(s)	88, 878, 1194
FspBI	CTAG	4 cut(s)	209, 681, 744, 798
GluI	GCNGC	3 cut(s)	88, 878, 1194
Hin1II	CATG	2 cut(s)	488, 966
HincII	GTYRAC	2 cut(s)	873, 1057
HindII	GTYRAC	2 cut(s)	873, 1057
HindIII	AAGCTT	1 cut(s)	1199
HpaI	GTTAAC	2 cut(s)	873, 1057
HphI	GGTGA	1 cut(s)	350
Hpy166II	GTNNAC	5 cut(s)	240, 873, 1057, 1277, 1313
Hpy188I	TCNGA	7 cut(s)	160, 415, 613, 652, 1099, 1156, 1288
Hpy188III	TCNNGA	2 cut(s)	209, 638
Hpy8I	GTNNAC	5 cut(s)	240, 873, 1057, 1277, 1313
Hpy99I	CGWCG	1 cut(s)	313
HpyAV	CCTTC	6 cut(s)	27, 139, 545, 750, 1022, 1084
HpyCH4III	ACNGT	4 cut(s)	29, 77, 541, 1075
HpyCH4IV	ACGT	3 cut(s)	430, 452, 1246
HpyCH4V	TGCA	8 cut(s)	220, 316, 424, 673, 935, 1107, 1143, 1196
HpyF3I	CTNAG	7 cut(s)	21, 49, 159, 531, 612, 729, 1254
HpySE526I	ACGT	3 cut(s)	430, 452, 1246
Hsp92II	CATG	2 cut(s)	488, 966
KspAI	GTTAAC	2 cut(s)	873, 1057
Kzo9I	GATC	8 cut(s)	52, 223, 366, 410, 567, 608, 732, 1228
Lsp1109I	GCAGC	2 cut(s)	864, 1180
LweI	GCATC	3 cut(s)	207, 303, 660
MaeI	CTAG	4 cut(s)	209, 681, 744, 798
MaeII	ACGT	3 cut(s)	430, 452, 1246
MaeIII	GTNAC	4 cut(s)	115, 229, 337, 1080
MalI	GATC	8 cut(s)	54, 225, 368, 412, 569, 610, 734, 1230
MboI	GATC	8 cut(s)	52, 223, 366, 410, 567, 608, 732, 1228
MboII	GAAGA	9 cut(s)	139, 142, 347, 415, 428, 547, 564, 861, 1169
MfeI	CAATTG	3 cut(s)	362, 736, 944
MflI	RGATCY	3 cut(s)	52, 223, 608
MluCI	AATT	8 cut(s)	101, 134, 167, 362, 736, 944, 1035, 1145
MlyI	GAGTC	5 cut(s)	346, 567, 641, 995, 1283
MmeI	TCCRAC	4 cut(s)	288, 586, 796, 984
MnlI	CCTC	5 cut(s)	193, 252, 607, 760, 951
MseI	TTAA	9 cut(s)	69, 491, 501, 581, 633, 821, 834, 872, 1056
MspA1I	CMGCKG	1 cut(s)	1253
MspCI	CTTAAG	1 cut(s)	500
MunI	CAATTG	3 cut(s)	362, 736, 944
NdeII	GATC	8 cut(s)	52, 223, 366, 410, 567, 608, 732, 1228
NlaIII	CATG	2 cut(s)	488, 966
NmeAIII	GCCGAG	1 cut(s)	41
NmuCI	GTSAC	2 cut(s)	229, 337
PcsI	WCGNNNNNNNCGW	1 cut(s)	1058
PfeI	GAWTC	6 cut(s)	442, 653, 1007, 1049, 1063, 1126
PkrI	GCNGC	3 cut(s)	89, 879, 1195
PleI	GAGTC	5 cut(s)	346, 566, 641, 994, 1283
PpsI	GAGTC	5 cut(s)	346, 566, 641, 994, 1283
PshBI	ATTAAT	1 cut(s)	821
Psp1406I	AACGTT	1 cut(s)	1246
PspPI	GGNCC	1 cut(s)	261
PsuI	RGATCY	3 cut(s)	52, 223, 608
PvuII	CAGCTG	1 cut(s)	1253
RsaI	GTAC	3 cut(s)	241, 298, 451
RsaNI	GTAC	3 cut(s)	240, 297, 450
SaqAI	TTAA	9 cut(s)	69, 491, 501, 581, 633, 821, 834, 872, 1056
SatI	GCNGC	3 cut(s)	88, 878, 1194
Sau3AI	GATC	8 cut(s)	52, 223, 366, 410, 567, 608, 732, 1228
Sau96I	GGNCC	1 cut(s)	261
SchI	GAGTC	5 cut(s)	346, 567, 641, 995, 1283
SfaNI	GCATC	3 cut(s)	207, 303, 660
SfcI	CTRYAG	1 cut(s)	618
SinI	GGWCC	1 cut(s)	261
SmlI	CTYRAG	2 cut(s)	500, 638
SmoI	CTYRAG	2 cut(s)	500, 638
Sse9I	AATT	8 cut(s)	101, 134, 167, 362, 736, 944, 1035, 1145
SsiI	CCGC	4 cut(s)	65, 87, 90, 1067
SspMI	CTAG	4 cut(s)	209, 681, 744, 798
TaaI	ACNGT	4 cut(s)	29, 77, 541, 1075
TaiI	ACGT	3 cut(s)	433, 455, 1249
TaqI	TCGA	2 cut(s)	719, 1124
TasI	AATT	8 cut(s)	101, 134, 167, 362, 736, 944, 1035, 1145
TatI	WGTACW	2 cut(s)	239, 296
TauI	GCSGC	1 cut(s)	90
TfiI	GAWTC	6 cut(s)	442, 653, 1007, 1049, 1063, 1126
Tru1I	TTAA	9 cut(s)	69, 491, 501, 581, 633, 821, 834, 872, 1056
Tru9I	TTAA	9 cut(s)	69, 491, 501, 581, 633, 821, 834, 872, 1056
TscAI	CASTG	1 cut(s)	234
TseFI	GTSAC	2 cut(s)	229, 337
TseI	GCWGC	2 cut(s)	877, 1193
Tsp45I	GTSAC	2 cut(s)	229, 337
TspDTI	ATGAA	7 cut(s)	181, 416, 473, 564, 887, 1103, 1155
TspRI	CASTG	1 cut(s)	234
Vha464I	CTTAAG	1 cut(s)	500
VpaK11BI	GGWCC	1 cut(s)	261
VspI	ATTAAT	1 cut(s)	821
XagI	CCTNNNNNAGG	1 cut(s)	256
XapI	RAATTY	1 cut(s)	101
XbaI	TCTAGA	1 cut(s)	208
XmiI	GTMKAC	1 cut(s)	1276
XspI	CTAG	4 cut(s)	209, 681, 744, 798

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.