Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010933

Physical Location & Seq

Genomic Coordinates Reverse (-)

18648075 .. 18649521

Gene Structure 1447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G50310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGAGTGGGTTCGAGGAGAAACAATTGGGTTCGGAACCTTCTCTACTGTCAGTACAGCGACAAAGTCTAGAAACTCCGGCGACTTTCCTGCACTTATCGCTGTGAAGTCGACGGATGCTTATGGCGCCGCTTCACTCTCCAACGAGAAATCGGTGTTGGATTCACTCGGTGATTGTCCTGAGATCATACGGTGTTACGGCGAGGATTCAACGGTGGAGAACGGAGAAGAGATGCATAACTTGTTATTAGAGTACGCTTCGAGAGGAAGCTTAGCGAGTTACATGAAGAAACTTGGCGGTGAGGGTTTACCGGAGTCCACCGTGCGTCGCCACACAGGATCAGTGCTTCGAGGGTTACGTCACATCCACGCTAAAGGGTTTGCACACTGCGATATAAAACTCGCGAATATTCTGTTATTTAACGACGGCTCTGTTAAAATTGCCGATTTCGGTTTGGCGATGAGAGTTGACGGAGATTTAACGGCGTTAAGAAAAAGTGTGGAGATTAGAGGGACGCCGTTATACATGGCACCGGAATGTGTTAATGATAACGAGTATGGATCAGCGGCTGACGTGTGGGCTTTAGGATGTGCTGTAGTTGAGATGTTTAGTGGCAAAACGGCATGGAGTGTTAAAGAAGGATCACACTTCATGTCGCTTTTGATACGTATAGGTGTTGGTGATGAGTTACCGAAGATTCCAGAGATGTTGTCCGAAGAAGGCAAGGATTTTTTGTCGAAGTGTTTTGTTAAAGATCCAGCGAAAAGATGGACGGCTGAGATGCTTTTGAACCATTCGTTTGTAACCATTGATCTTGAAGATGATCACCGAGAAAACTTCGTTGTGAAGGTTAAGGATGAGGATAAAGTATTGATGTCTCCAAAGTGTCCTTTTGAGTTTGATGATTGGGATTCTTTTACATTGGATTCAAACCCCTCGTTTGATTCTCCGGTGGAGAGACTTGGGAGTTTGGTTAGTGGTTCGATCCCTGATTGGTCTGTCGGTGGGAGTTGGCTTACAGTCCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005938 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006996 GO:0007010 GO:0007017 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009653 GO:0009893 GO:0009987 GO:0010562 GO:0010604 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0030587 GO:0030865 GO:0031098 GO:0031122 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0032502 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043412 GO:0043549 GO:0043622 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0046777 GO:0048046 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051703 GO:0051704 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0090702 GO:0097435 GO:0099120 GO:0099568 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

342

Amino Acids

37.55

Weight (kDa)

4.98

Isoelectric Point (pI)

40.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	4 - 268	9.7e-54	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	6 - 263	3.3e-33	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010933)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50310 AT4G36950 AT5G67080
fragaria_vesca	FvH4_1g16150
malus_domestica	MD02G1173600.v1.1 MD15G1285100.v1.1
prunus_persica	Prupe.2G016400_v2.0.a1 Prupe.3G259700_v2.0.a1 Prupe.7G132100_v2.0.a1
pyrus_communis	pycom02g14000
rosa_chinensis	RchiOBHm_Chr2g0105831
rosa_laevigata	RLG00000017463
rosa_multiflora	Rmu_sc0004386.1_g000026
rosa_roxburghii	Rroxscaffold_2G00137860
rosa_rugosa	Rorug02G0130700
rosa_samantha	Rh2AG181800 Rh2BG191600 Rh2CG186200 Rh2DG188200
rosa_wichuraiana	Rw2G014250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	125, 529
AccI	GTMKAC	1 cut(s)	110
AccII	CGCG	1 cut(s)	404
AciI	CCGC	3 cut(s)	129, 297, 566
AclWI	GGATC	5 cut(s)	346, 568, 649, 749, 979
AcyI	GRCGYC	2 cut(s)	126, 515
AdeI	CACNNNGTG	1 cut(s)	170
AfaI	GTAC	2 cut(s)	55, 254
AflIII	ACRYGT	1 cut(s)	573
AgsI	TTSAA	4 cut(s)	210, 790, 818, 930
AjiI	CACGTC	1 cut(s)	574
AjuI	GAANNNNNNNTTGG	2 cut(s)	140, 172
AluBI	AGCT	1 cut(s)	270
AluI	AGCT	1 cut(s)	270
Alw26I	GTCTC	2 cut(s)	882, 952
AlwI	GGATC	5 cut(s)	346, 568, 649, 749, 979
AlwNI	CAGNNNCTG	1 cut(s)	569
AspLEI	GCGC	1 cut(s)	128
AsuHPI	GGTGA	4 cut(s)	182, 311, 692, 818
BanI	GGYRCC	2 cut(s)	125, 529
BccI	CCATC	1 cut(s)	762
BceAI	ACGGC	6 cut(s)	214, 442, 498, 502, 636, 789
BcgI	CGANNNNNNTGC	2 cut(s)	71, 105
BclI	TGATCA	1 cut(s)	823
BcoDI	GTCTC	2 cut(s)	882, 952
BfaI	CTAG	1 cut(s)	69
BfmI	CTRYAG	1 cut(s)	594
BfoI	RGCGCY	1 cut(s)	129
BisI	GCNGC	2 cut(s)	129, 567
BlpI	GCTNAGC	1 cut(s)	271
BlsI	GCNGC	2 cut(s)	130, 568
BmgBI	CACGTC	1 cut(s)	574
BmiI	GGNNCC	3 cut(s)	37, 127, 531
BmsI	GCATC	3 cut(s)	106, 222, 771
Bpu1102I	GCTNAGC	1 cut(s)	271
BsaAI	YACGTR	1 cut(s)	668
BsaHI	GRCGYC	2 cut(s)	126, 515
BsaWI	WCCGGW	4 cut(s)	310, 532, 949, 1023
BseGI	GGATG	4 cut(s)	121, 363, 593, 862
BseMII	CTCAG	2 cut(s)	171, 768
BseRI	GAGGAG	1 cut(s)	30
BsgI	GTGCAG	1 cut(s)	75
Bsh1236I	CGCG	1 cut(s)	404
BshNI	GGYRCC	2 cut(s)	125, 529
BsiSI	CCGG	5 cut(s)	78, 311, 533, 950, 1024
BslFI	GGGAC	1 cut(s)	526
BsmAI	GTCTC	2 cut(s)	882, 952
BsmFI	GGGAC	1 cut(s)	526
Bsp143I	GATC	8 cut(s)	183, 338, 560, 641, 754, 811, 823, 984
Bsp1720I	GCTNAGC	1 cut(s)	271
Bsp68I	TCGCGA	1 cut(s)	404
BspACI	CCGC	3 cut(s)	129, 297, 566
BspCNI	CTCAG	2 cut(s)	172, 769
BspFNI	CGCG	1 cut(s)	404
BspLI	GGNNCC	3 cut(s)	37, 127, 531
BspPI	GGATC	5 cut(s)	346, 568, 649, 749, 979
BspT107I	GGYRCC	2 cut(s)	125, 529
BssMI	GATC	8 cut(s)	183, 338, 560, 641, 754, 811, 823, 984
BssNI	GRCGYC	2 cut(s)	126, 515
Bst4CI	ACNGT	5 cut(s)	49, 192, 214, 322, 1021
Bst6I	CTCTTC	1 cut(s)	222
BstACI	GRCGYC	2 cut(s)	126, 515
BstBAI	YACGTR	1 cut(s)	668
BstDEI	CTNAG	3 cut(s)	180, 271, 777
BstF5I	GGATG	4 cut(s)	121, 363, 593, 862
BstFNI	CGCG	1 cut(s)	404
BstH2I	RGCGCY	1 cut(s)	129
BstHHI	GCGC	1 cut(s)	128
BstKTI	GATC	8 cut(s)	186, 341, 563, 644, 757, 814, 826, 987
BstMAI	GTCTC	2 cut(s)	882, 952
BstMBI	GATC	8 cut(s)	183, 338, 560, 641, 754, 811, 823, 984
BstMWI	GCNNNNNNNGC	2 cut(s)	98, 125
BstSFI	CTRYAG	1 cut(s)	594
BstSNI	TACGTA	1 cut(s)	668
BstUI	CGCG	1 cut(s)	404
BstX2I	RGATCY	1 cut(s)	754
BstYI	RGATCY	1 cut(s)	754
BtgZI	GCGATG	1 cut(s)	473
BtrI	CACGTC	1 cut(s)	574
BtsCI	GGATG	4 cut(s)	121, 363, 593, 862
BtsI	GCAGTG	1 cut(s)	385
BtsIMutI	CAGTG	2 cut(s)	348, 385
BtuMI	TCGCGA	1 cut(s)	404
CaiI	CAGNNNCTG	1 cut(s)	569
CfoI	GCGC	1 cut(s)	128
CseI	GACGC	2 cut(s)	314, 523
Csp6I	GTAC	2 cut(s)	54, 253
CviAII	CATG	4 cut(s)	283, 526, 624, 652
CviJI	RGCY	6 cut(s)	270, 429, 569, 581, 776, 1015
CviKI_1	RGCY	6 cut(s)	270, 429, 569, 581, 776, 1015
CviQI	GTAC	2 cut(s)	54, 253
DdeI	CTNAG	3 cut(s)	180, 271, 777
DinI	GGCGCC	1 cut(s)	127
DpnI	GATC	8 cut(s)	185, 340, 562, 643, 756, 813, 825, 986
DpnII	GATC	8 cut(s)	183, 338, 560, 641, 754, 811, 823, 984
DraIII	CACNNNGTG	1 cut(s)	170
Eam1104I	CTCTTC	1 cut(s)	222
EarI	CTCTTC	1 cut(s)	222
Eco105I	TACGTA	1 cut(s)	668
EcoT22I	ATGCAT	1 cut(s)	237
EgeI	GGCGCC	1 cut(s)	127
EheI	GGCGCC	1 cut(s)	127
FaeI	CATG	4 cut(s)	286, 529, 627, 655
FaqI	GGGAC	1 cut(s)	526
FatI	CATG	4 cut(s)	282, 525, 623, 651
FbaI	TGATCA	1 cut(s)	823
FblI	GTMKAC	1 cut(s)	110
Fnu4HI	GCNGC	2 cut(s)	129, 567
FokI	GGATG	4 cut(s)	128, 350, 600, 869
Fsp4HI	GCNGC	2 cut(s)	129, 567
FspBI	CTAG	1 cut(s)	69
GlaI	GCGC	1 cut(s)	127
GluI	GCNGC	2 cut(s)	129, 567
HaeII	RGCGCY	1 cut(s)	129
HapII	CCGG	5 cut(s)	78, 311, 533, 950, 1024
HgaI	GACGC	2 cut(s)	314, 523
HhaI	GCGC	1 cut(s)	128
Hin1I	GRCGYC	2 cut(s)	126, 515
Hin1II	CATG	4 cut(s)	286, 529, 627, 655
Hin6I	GCGC	1 cut(s)	126
HinP1I	GCGC	1 cut(s)	126
HincII	GTYRAC	2 cut(s)	111, 469
HindII	GTYRAC	2 cut(s)	111, 469
HindIII	AAGCTT	1 cut(s)	268
HinfI	GANTC	7 cut(s)	161, 206, 314, 697, 911, 926, 944
HpaII	CCGG	5 cut(s)	78, 311, 533, 950, 1024
HphI	GGTGA	4 cut(s)	182, 311, 692, 818
Hpy166II	GTNNAC	4 cut(s)	111, 308, 318, 469
Hpy188I	TCNGA	2 cut(s)	35, 715
Hpy188III	TCNNGA	6 cut(s)	69, 179, 261, 403, 701, 815
Hpy8I	GTNNAC	4 cut(s)	111, 308, 318, 469
Hpy99I	CGWCG	3 cut(s)	115, 330, 428
HpyAV	CCTTC	4 cut(s)	49, 632, 713, 841
HpyCH4III	ACNGT	5 cut(s)	49, 192, 214, 322, 1021
HpyCH4IV	ACGT	3 cut(s)	358, 573, 667
HpyCH4V	TGCA	3 cut(s)	92, 235, 383
HpyF10VI	GCNNNNNNNGC	2 cut(s)	98, 125
HpyF3I	CTNAG	3 cut(s)	180, 271, 777
HpySE526I	ACGT	3 cut(s)	358, 573, 667
Hsp92I	GRCGYC	2 cut(s)	126, 515
Hsp92II	CATG	4 cut(s)	286, 529, 627, 655
HspAI	GCGC	1 cut(s)	126
KasI	GGCGCC	1 cut(s)	125
Ksp22I	TGATCA	1 cut(s)	823
Kzo9I	GATC	8 cut(s)	183, 338, 560, 641, 754, 811, 823, 984
LweI	GCATC	3 cut(s)	106, 222, 771
MaeI	CTAG	1 cut(s)	69
MaeII	ACGT	3 cut(s)	358, 573, 667
MaeIII	GTNAC	6 cut(s)	194, 278, 354, 359, 687, 802
MalI	GATC	8 cut(s)	185, 340, 562, 643, 756, 813, 825, 986
MboI	GATC	8 cut(s)	183, 338, 560, 641, 754, 811, 823, 984
MboII	GAAGA	5 cut(s)	239, 298, 706, 728, 830
MfeI	CAATTG	1 cut(s)	24
MflI	RGATCY	1 cut(s)	754
MluCI	AATT	2 cut(s)	24, 438
Mly113I	GGCGCC	1 cut(s)	126
MlyI	GAGTC	1 cut(s)	323
MmeI	TCCRAC	2 cut(s)	138, 165
MnlI	CCTC	8 cut(s)	8, 196, 257, 295, 344, 503, 853, 946
Mph1103I	ATGCAT	1 cut(s)	237
MseI	TTAA	8 cut(s)	420, 435, 479, 488, 543, 633, 750, 852
MslI	CAYNNNNRTG	1 cut(s)	535
MspA1I	CMGCKG	1 cut(s)	566
MspI	CCGG	5 cut(s)	78, 311, 533, 950, 1024
MunI	CAATTG	1 cut(s)	24
MvnI	CGCG	1 cut(s)	404
MwoI	GCNNNNNNNGC	2 cut(s)	98, 125
NarI	GGCGCC	1 cut(s)	126
NdeII	GATC	8 cut(s)	183, 338, 560, 641, 754, 811, 823, 984
NlaIII	CATG	4 cut(s)	286, 529, 627, 655
NlaIV	GGNNCC	3 cut(s)	37, 127, 531
NmuCI	GTSAC	1 cut(s)	359
NruI	TCGCGA	1 cut(s)	404
NsiI	ATGCAT	1 cut(s)	237
PcsI	WCGNNNNNNNCGW	1 cut(s)	355
PfeI	GAWTC	6 cut(s)	161, 206, 697, 911, 926, 944
PflFI	GACNNNGTC	1 cut(s)	64
PkrI	GCNGC	2 cut(s)	130, 568
PleI	GAGTC	1 cut(s)	322
PluTI	GGCGCC	1 cut(s)	129
PpsI	GAGTC	1 cut(s)	322
Ppu21I	YACGTR	1 cut(s)	668
PspN4I	GGNNCC	3 cut(s)	37, 127, 531
PsrI	GAACNNNNNNTAC	2 cut(s)	28, 60
PstNI	CAGNNNCTG	1 cut(s)	569
PsuI	RGATCY	1 cut(s)	754
PsyI	GACNNNGTC	1 cut(s)	64
RruI	TCGCGA	1 cut(s)	404
RsaI	GTAC	2 cut(s)	55, 254
RsaNI	GTAC	2 cut(s)	54, 253
RseI	CAYNNNNRTG	1 cut(s)	535
SalI	GTCGAC	1 cut(s)	109
SaqAI	TTAA	8 cut(s)	420, 435, 479, 488, 543, 633, 750, 852
SatI	GCNGC	2 cut(s)	129, 567
Sau3AI	GATC	8 cut(s)	183, 338, 560, 641, 754, 811, 823, 984
SchI	GAGTC	1 cut(s)	323
SetI	ASST	7 cut(s)	41, 272, 361, 576, 670, 676, 852
SfaNI	GCATC	3 cut(s)	106, 222, 771
SfcI	CTRYAG	1 cut(s)	594
SfoI	GGCGCC	1 cut(s)	127
SmiMI	CAYNNNNRTG	1 cut(s)	535
SnaBI	TACGTA	1 cut(s)	668
Sse9I	AATT	2 cut(s)	24, 438
SsiI	CCGC	3 cut(s)	129, 297, 566
SspDI	GGCGCC	1 cut(s)	125
SspI	AATATT	1 cut(s)	409
SspMI	CTAG	1 cut(s)	69
TaaI	ACNGT	5 cut(s)	49, 192, 214, 322, 1021
TaiI	ACGT	3 cut(s)	361, 576, 670
TaqI	TCGA	6 cut(s)	13, 110, 260, 349, 737, 983
TasI	AATT	2 cut(s)	24, 438
TatI	WGTACW	1 cut(s)	53
TauI	GCSGC	2 cut(s)	131, 569
TfiI	GAWTC	6 cut(s)	161, 206, 697, 911, 926, 944
Tru1I	TTAA	8 cut(s)	420, 435, 479, 488, 543, 633, 750, 852
Tru9I	TTAA	8 cut(s)	420, 435, 479, 488, 543, 633, 750, 852
TscAI	CASTG	2 cut(s)	348, 392
TseFI	GTSAC	1 cut(s)	359
Tsp45I	GTSAC	1 cut(s)	359
TspDTI	ATGAA	2 cut(s)	299, 640
TspGWI	ACGGA	3 cut(s)	128, 237, 486
TspRI	CASTG	2 cut(s)	348, 392
Tth111I	GACNNNGTC	1 cut(s)	64
XbaI	TCTAGA	1 cut(s)	68
XcmI	CCANNNNNNNNNTGG	1 cut(s)	765
XmiI	GTMKAC	1 cut(s)	110
XspI	CTAG	1 cut(s)	69
Zsp2I	ATGCAT	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.