Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0010933

Physical Location & Seq

Genomic Coordinates Forward (+)

10604587 .. 10605319

Gene Structure 733 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g14000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGAGTGGATTCGCGGTAAAGAAATCGGCCGTGGAAGTTTCGCAACCATCTACGCAGCAAAACCCACCAGCCCATCTTCTCACCTTCCGCCGCTGGTGGCCGTCAAGTCGTCTGTATCCGGATACTCTGATTCGCTCAAGAACGAGAAGAAAGTCCTCGACCAAATCGGCTCCTGCCCACAAATCATCCGATGCTTCGGCGACGACCACACAGTCGAGAACGGCGAGAAGTTCTTCAACTTGGTTCTGGAGTACGCCAGAGGCGGGACTCTGGCGGACGAGCTAAAAAGAAACGGCGGACGCTTGCCGGAATTTGATGTTCGACGCCACGCAAAGTCGGTGCTCAGAGGACTTGAATTCATCCACGCAAAAGGGTTCGTCCACTGTGACTTGAAGCTTCAGAACGTCCTGGTTTTCGGCAACGGTGCGACGAAAATCGCCGACTTCGGGCTGGCGAAGAAAGCAGGGGAATCGGAAAACAAAGTCGAAGTCAGGGGAACGCCGCTGTACATGGCGCCGGAATCCGTTAACGACAACGAATACGAGTCCTGCTCCGACGTCTGGGCTTTCGGGTGTTTGGTGGCCGAGATGGCGAGCGGGAAACCGGTGTGGGATCACAACCCCGCCGTGAACATGTTCAAGATTCTGATGAGGATTGGCGGCGACGAGTTGCCTGTTTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005938 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006996 GO:0007010 GO:0007017 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009653 GO:0009893 GO:0009987 GO:0010562 GO:0010604 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0030587 GO:0030865 GO:0031098 GO:0031122 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0032502 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043412 GO:0043549 GO:0043622 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0046777 GO:0048046 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051703 GO:0051704 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0090702 GO:0097435 GO:0099120 GO:0099568 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

228

Amino Acids

24.9

Weight (kDa)

6.6

Isoelectric Point (pI)

37.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	5 - 210	3e-46	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	6 - 208	4.5e-35	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010933)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50310 AT4G36950 AT5G67080
fragaria_vesca	FvH4_1g16150
malus_domestica	MD02G1173600.v1.1 MD15G1285100.v1.1
prunus_persica	Prupe.2G016400_v2.0.a1 Prupe.3G259700_v2.0.a1 Prupe.7G132100_v2.0.a1
pyrus_communis	pycom02g14000
rosa_chinensis	RchiOBHm_Chr2g0105831
rosa_laevigata	RLG00000017463
rosa_multiflora	Rmu_sc0004386.1_g000026
rosa_roxburghii	Rroxscaffold_2G00137860
rosa_rugosa	Rorug02G0130700
rosa_samantha	Rh2AG181800 Rh2BG191600 Rh2CG186200 Rh2DG188200
rosa_wichuraiana	Rw2G014250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	212
AatII	GACGTC	1 cut(s)	561
AccB1I	GGYRCC	1 cut(s)	514
AccBSI	CCGCTC	1 cut(s)	597
AccII	CGCG	1 cut(s)	15
AccIII	TCCGGA	1 cut(s)	119
AclWI	GGATC	1 cut(s)	621
AcoI	YGGCCR	3 cut(s)	28, 99, 582
AcsI	RAATTY	2 cut(s)	311, 356
AcuI	CTGAAG	1 cut(s)	383
AcyI	GRCGYC	3 cut(s)	325, 515, 558
AfaI	GTAC	2 cut(s)	254, 509
AfiI	CCNNNNNNNGG	3 cut(s)	264, 447, 561
AflIII	ACRYGT	1 cut(s)	633
AgeI	ACCGGT	1 cut(s)	604
AgsI	TTSAA	4 cut(s)	238, 356, 394, 640
AjnI	CCWGG	1 cut(s)	408
AluBI	AGCT	2 cut(s)	283, 397
AluI	AGCT	2 cut(s)	283, 397
Alw21I	GWGCWC	1 cut(s)	345
AlwI	GGATC	1 cut(s)	621
Aor13HI	TCCGGA	1 cut(s)	119
AoxI	GGCC	3 cut(s)	28, 99, 582
ApeKI	GCWGC	1 cut(s)	56
ApoI	RAATTY	2 cut(s)	311, 356
ArsI	GACNNNNNNTTYG	2 cut(s)	474, 506
AsiGI	ACCGGT	1 cut(s)	604
Asp700I	GAANNNNTTC	2 cut(s)	233, 635
AspLEI	GCGC	1 cut(s)	517
AsuHPI	GGTGA	1 cut(s)	74
BanI	GGYRCC	1 cut(s)	514
Bbv12I	GWGCWC	1 cut(s)	345
BbvI	GCAGC	1 cut(s)	68
BccI	CCATC	3 cut(s)	56, 82, 583
BceAI	ACGGC	5 cut(s)	15, 86, 238, 310, 611
BcgI	CGANNNNNNTGC	2 cut(s)	453, 487
BciT130I	CCWGG	1 cut(s)	410
BciVI	GTATCC	2 cut(s)	116, 127
BfoI	RGCGCY	1 cut(s)	518
BfuI	GTATCC	2 cut(s)	116, 127
BglI	GCCNNNNNGGC	1 cut(s)	590
BisI	GCNGC	4 cut(s)	57, 92, 503, 661
BlsI	GCNGC	4 cut(s)	58, 93, 504, 662
Bme1390I	CCNGG	1 cut(s)	410
BmiI	GGNNCC	2 cut(s)	172, 516
BmrFI	CCNGG	1 cut(s)	410
BmsI	GCATC	1 cut(s)	182
BplI	GAGNNNNNCTC	2 cut(s)	536, 568
BpmI	CTGGAG	1 cut(s)	269
BpuEI	CTTGAG	1 cut(s)	122
BsaHI	GRCGYC	3 cut(s)	325, 515, 558
BsaJI	CCNNGG	1 cut(s)	31
BsaWI	WCCGGW	2 cut(s)	119, 604
Bsc4I	CCNNNNNNNGG	3 cut(s)	264, 447, 561
Bse118I	RCCGGY	1 cut(s)	604
BseAI	TCCGGA	1 cut(s)	119
BseBI	CCWGG	1 cut(s)	410
BseDI	CCNNGG	1 cut(s)	31
BseGI	GGATG	2 cut(s)	186, 360
BseLI	CCNNNNNNNGG	3 cut(s)	264, 447, 561
BseMII	CTCAG	1 cut(s)	358
BseX3I	CGGCCG	1 cut(s)	28
BseXI	GCAGC	1 cut(s)	68
Bsh1236I	CGCG	1 cut(s)	15
Bsh1285I	CGRYCG	1 cut(s)	31
BshFI	GGCC	3 cut(s)	30, 101, 584
BshNI	GGYRCC	1 cut(s)	514
BshTI	ACCGGT	1 cut(s)	604
BsiEI	CGRYCG	1 cut(s)	31
BsiHKAI	GWGCWC	1 cut(s)	345
BsiSI	CCGG	4 cut(s)	120, 308, 518, 605
BslFI	GGGAC	1 cut(s)	280
BslI	CCNNNNNNNGG	3 cut(s)	264, 447, 561
BsmFI	GGGAC	1 cut(s)	280
BsnI	GGCC	3 cut(s)	30, 101, 584
Bsp1286I	GDGCHC	1 cut(s)	345
Bsp13I	TCCGGA	1 cut(s)	119
Bsp1407I	TGTACA	1 cut(s)	507
Bsp143I	GATC	1 cut(s)	613
BspANI	GGCC	3 cut(s)	30, 101, 584
BspCNI	CTCAG	1 cut(s)	357
BspEI	TCCGGA	1 cut(s)	119
BspFNI	CGCG	1 cut(s)	15
BspLI	GGNNCC	2 cut(s)	172, 516
BspPI	GGATC	1 cut(s)	621
BspT107I	GGYRCC	1 cut(s)	514
BsrBI	CCGCTC	1 cut(s)	597
BsrFI	RCCGGY	1 cut(s)	604
BsrGI	TGTACA	1 cut(s)	507
BssAI	RCCGGY	1 cut(s)	604
BssECI	CCNNGG	1 cut(s)	31
BssMI	GATC	1 cut(s)	613
BssNI	GRCGYC	3 cut(s)	325, 515, 558
Bst2UI	CCWGG	1 cut(s)	410
Bst4CI	ACNGT	3 cut(s)	214, 386, 425
BstACI	GRCGYC	3 cut(s)	325, 515, 558
BstAUI	TGTACA	1 cut(s)	507
BstC8I	GCNNGC	3 cut(s)	305, 453, 595
BstDEI	CTNAG	1 cut(s)	344
BstDSI	CCRYGG	1 cut(s)	31
BstF5I	GGATG	2 cut(s)	186, 360
BstFNI	CGCG	1 cut(s)	15
BstH2I	RGCGCY	1 cut(s)	518
BstHHI	GCGC	1 cut(s)	517
BstKTI	GATC	1 cut(s)	616
BstMBI	GATC	1 cut(s)	613
BstMCI	CGRYCG	1 cut(s)	31
BstMWI	GCNNNNNNNGC	2 cut(s)	461, 590
BstNI	CCWGG	1 cut(s)	410
BstNSI	RCATGY	1 cut(s)	637
BstSCI	CCNGG	1 cut(s)	408
BstUI	CGCG	1 cut(s)	15
BstV1I	GCAGC	1 cut(s)	68
BstZI	CGGCCG	1 cut(s)	28
BsuI	GTATCC	2 cut(s)	116, 127
BsuRI	GGCC	3 cut(s)	30, 101, 584
BtgI	CCRYGG	1 cut(s)	31
BtsCI	GGATG	2 cut(s)	186, 360
BtsIMutI	CAGTG	1 cut(s)	382
Cac8I	GCNNGC	3 cut(s)	305, 453, 595
CfoI	GCGC	1 cut(s)	517
Cfr10I	RCCGGY	1 cut(s)	604
CseI	GACGC	2 cut(s)	309, 333
Csp6I	GTAC	2 cut(s)	253, 508
CspAI	ACCGGT	1 cut(s)	604
CviAII	CATG	2 cut(s)	511, 634
CviJI	RGCY	9 cut(s)	30, 72, 101, 171, 283, 397, 451, 566, 584
CviKI_1	RGCY	9 cut(s)	30, 72, 101, 171, 283, 397, 451, 566, 584
CviQI	GTAC	2 cut(s)	253, 508
DdeI	CTNAG	1 cut(s)	344
DinI	GGCGCC	1 cut(s)	516
DpnI	GATC	1 cut(s)	615
DpnII	GATC	1 cut(s)	613
DrdI	GACNNNNNNGTC	1 cut(s)	212
DseDI	GACNNNNNNGTC	1 cut(s)	212
EaeI	YGGCCR	3 cut(s)	28, 99, 582
EagI	CGGCCG	1 cut(s)	28
EciI	GGCGGA	3 cut(s)	78, 290, 312
EclXI	CGGCCG	1 cut(s)	28
Eco52I	CGGCCG	1 cut(s)	28
Eco57I	CTGAAG	1 cut(s)	383
EcoRI	GAATTC	1 cut(s)	356
EcoRII	CCWGG	1 cut(s)	408
EgeI	GGCGCC	1 cut(s)	516
EheI	GGCGCC	1 cut(s)	516
FaeI	CATG	2 cut(s)	514, 637
FaiI	YATR	2 cut(s)	512, 635
FaqI	GGGAC	1 cut(s)	280
FatI	CATG	2 cut(s)	510, 633
FauI	CCCGC	3 cut(s)	257, 590, 631
Fnu4HI	GCNGC	4 cut(s)	57, 92, 503, 661
FokI	GGATG	2 cut(s)	173, 347
Fsp4HI	GCNGC	4 cut(s)	57, 92, 503, 661
GlaI	GCGC	1 cut(s)	516
GluI	GCNGC	4 cut(s)	57, 92, 503, 661
GsuI	CTGGAG	1 cut(s)	269
HaeII	RGCGCY	1 cut(s)	518
HaeIII	GGCC	3 cut(s)	30, 101, 584
HapII	CCGG	4 cut(s)	120, 308, 518, 605
HgaI	GACGC	2 cut(s)	309, 333
HhaI	GCGC	1 cut(s)	517
Hin1I	GRCGYC	3 cut(s)	325, 515, 558
Hin1II	CATG	2 cut(s)	514, 637
Hin6I	GCGC	1 cut(s)	515
HinP1I	GCGC	1 cut(s)	515
HincII	GTYRAC	1 cut(s)	529
HindII	GTYRAC	1 cut(s)	529
HindIII	AAGCTT	1 cut(s)	395
HinfI	GANTC	7 cut(s)	10, 131, 268, 470, 521, 545, 643
HpaI	GTTAAC	1 cut(s)	529
HpaII	CCGG	4 cut(s)	120, 308, 518, 605
HphI	GGTGA	1 cut(s)	74
Hpy166II	GTNNAC	3 cut(s)	382, 529, 631
Hpy188I	TCNGA	7 cut(s)	130, 191, 347, 402, 475, 556, 648
Hpy188III	TCNNGA	5 cut(s)	120, 139, 217, 248, 640
Hpy8I	GTNNAC	3 cut(s)	382, 529, 631
Hpy99I	CGWCG	5 cut(s)	206, 327, 433, 560, 668
HpyAV	CCTTC	1 cut(s)	95
HpyCH4III	ACNGT	3 cut(s)	214, 386, 425
HpyCH4IV	ACGT	2 cut(s)	405, 558
HpyF10VI	GCNNNNNNNGC	2 cut(s)	461, 590
HpyF3I	CTNAG	1 cut(s)	344
HpySE526I	ACGT	2 cut(s)	405, 558
Hsp92I	GRCGYC	3 cut(s)	325, 515, 558
Hsp92II	CATG	2 cut(s)	514, 637
HspAI	GCGC	1 cut(s)	515
KasI	GGCGCC	1 cut(s)	514
Kpn2I	TCCGGA	1 cut(s)	119
KspAI	GTTAAC	1 cut(s)	529
Kzo9I	GATC	1 cut(s)	613
LmnI	GCTCC	2 cut(s)	176, 557
Lsp1109I	GCAGC	1 cut(s)	68
LweI	GCATC	1 cut(s)	182
MaeII	ACGT	2 cut(s)	405, 558
MaeIII	GTNAC	1 cut(s)	386
MalI	GATC	1 cut(s)	615
MbiI	CCGCTC	1 cut(s)	597
MboI	GATC	1 cut(s)	613
MboII	GAAGA	4 cut(s)	69, 160, 226, 469
MhlI	GDGCHC	1 cut(s)	345
MluCI	AATT	2 cut(s)	311, 356
Mly113I	GGCGCC	1 cut(s)	515
MlyI	GAGTC	2 cut(s)	262, 554
MmeI	TCCRAC	1 cut(s)	579
MnlI	CCTC	4 cut(s)	167, 254, 341, 645
MroI	TCCGGA	1 cut(s)	119
MroXI	GAANNNNTTC	2 cut(s)	233, 635
MseI	TTAA	1 cut(s)	528
MspA1I	CMGCKG	2 cut(s)	94, 505
MspI	CCGG	4 cut(s)	120, 308, 518, 605
MspR9I	CCNGG	1 cut(s)	410
MvaI	CCWGG	1 cut(s)	410
MvnI	CGCG	1 cut(s)	15
MwoI	GCNNNNNNNGC	2 cut(s)	461, 590
NarI	GGCGCC	1 cut(s)	515
NdeII	GATC	1 cut(s)	613
NlaIII	CATG	2 cut(s)	514, 637
NlaIV	GGNNCC	2 cut(s)	172, 516
NmeAIII	GCCGAG	1 cut(s)	610
NmuCI	GTSAC	1 cut(s)	386
NspI	RCATGY	1 cut(s)	637
PciI	ACATGT	1 cut(s)	633
PcsI	WCGNNNNNNNCGW	1 cut(s)	222
PdmI	GAANNNNTTC	2 cut(s)	233, 635
PfeI	GAWTC	5 cut(s)	10, 131, 470, 521, 643
PinAI	ACCGGT	1 cut(s)	604
PkrI	GCNGC	4 cut(s)	58, 93, 504, 662
PleI	GAGTC	2 cut(s)	262, 553
PluTI	GGCGCC	1 cut(s)	518
PpsI	GAGTC	2 cut(s)	262, 553
PscI	ACATGT	1 cut(s)	633
Psp6I	CCWGG	1 cut(s)	408
PspGI	CCWGG	1 cut(s)	408
PspN4I	GGNNCC	2 cut(s)	172, 516
RsaI	GTAC	2 cut(s)	254, 509
RsaNI	GTAC	2 cut(s)	253, 508
SaqAI	TTAA	1 cut(s)	528
SatI	GCNGC	4 cut(s)	57, 92, 503, 661
Sau3AI	GATC	1 cut(s)	613
SchI	GAGTC	2 cut(s)	262, 554
ScrFI	CCNGG	1 cut(s)	410
SduI	GDGCHC	1 cut(s)	345
SetI	ASST	5 cut(s)	87, 285, 399, 408, 561
SfaNI	GCATC	1 cut(s)	182
SfoI	GGCGCC	1 cut(s)	516
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
Sse9I	AATT	2 cut(s)	311, 356
SspDI	GGCGCC	1 cut(s)	514
StyD4I	CCNGG	1 cut(s)	408
TaaI	ACNGT	3 cut(s)	214, 386, 425
TaiI	ACGT	2 cut(s)	408, 561
TaqI	TCGA	4 cut(s)	159, 216, 322, 486
TasI	AATT	2 cut(s)	311, 356
TatI	WGTACW	1 cut(s)	507
TauI	GCSGC	3 cut(s)	94, 505, 663
TfiI	GAWTC	5 cut(s)	10, 131, 470, 521, 643
Tru1I	TTAA	1 cut(s)	528
Tru9I	TTAA	1 cut(s)	528
TscAI	CASTG	1 cut(s)	389
TseFI	GTSAC	1 cut(s)	386
TseI	GCWGC	1 cut(s)	56
Tsp45I	GTSAC	1 cut(s)	386
TspDTI	ATGAA	1 cut(s)	349
TspGWI	ACGGA	1 cut(s)	514
TspRI	CASTG	1 cut(s)	389
XapI	RAATTY	2 cut(s)	311, 356
XceI	RCATGY	1 cut(s)	637
XmnI	GAANNNNTTC	2 cut(s)	233, 635
ZraI	GACGTC	1 cut(s)	559

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.