Rh2BG191600

Serine/Threonine protein kinases, catalytic domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0010933
Physical Location & Seq
Forward (+)
17245250 .. 17246751
1502 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG191600.1

Sequence Viewer

Length: 1161 bp
ATGTCTATAAATAGGCCCTCATGTCTCAATTGGCTGTTCAACTCATTTTGCTTATGTTTTCCTCCTCTCTTTCCCAAAAAATCCTCACAAACTAATCTCATATCAACCATGGAGTGGATTCGAGGCGAGCAACTTGGCCGTGGAAGCTTTGCTACCGTCAGTTCAGCAAAACCCAAAAATCAGTCTACTAAAACCCCATCATTGATGGCCGTCAAGTCTTCTGAAGCTTCCTTCTCTTCTCTGCTCAAGAACGAGAAACAAGTTCTCGACCAAATCGGCTCCTGCCCGCAAGTCGTCCGCTGCTTCGGAGATGATCACACCTTCGAAAACGGCACGGCGTTTTACAACTTGTTCTTGGAGTACGCCAGCGGCGGCTGCTTGGCCGATCAGCTCAAGAAAAACGGCGGCCGGTTAGCGGAGATAGATGTTAAACGATATGCCAGAGCAGTTCTGAAAGGCCTTCGCTTTGTTCATTCAAAAGGGTTTGTTCACTGCGACGTAAAGCTAGCGAATATTCTTGTTTTTGAGAATGGTGCGGCGAAGATTGCCGATTTCGGACTTGCCAAAAAGGCAGGGCCGACCGGAAACAGAGTCGAAGTCCGGGGAACTCCGCTGTACATGTCGCCGGAATCGGTGAACGAGCAAGAGTTCGAGTCGCCGGCCGATATTTGGGCTTTTGGGTGTTTAGTGGCGGAGATGGTGACCGGGAAACCGGTCTGGAATCATGGGCCGGGCTCGACTATGTGTAAGCTTTTGATGAGAATAGGGGGAGATGAGTCGCCGGAAATTCCAGAAGAGTTGAGTGAACAAGGGAAAGATTTTCTTGGAAAGTGTTTTGTGAAGGATCAGAGAAAGAGATGGACGGCTGAGATGCTTTTGGAACATCCCTTTGTTATCTCTGATGATACTGTTCCATTGGAGGATGTTGAAGACGAGTTGTTCTCATCTCCAAGAGGTCCTTTTGATTTCCCTGATTGGGTTTCGATGACTAGTTCGGAAATTTCACCAGAATTTTCTGAGTTGGTGACAAGTGATTTGAATTCCAGCTTTGATTGGTCGTCGGAAACGAGTTCTAATCCGGCGGCCGGTCGTTTGCGGCGGCTGGTGACGGATGAGACACATGATTGGTCGGTTTCCGGAAGTTGGGTGACTATCAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

386

Amino Acids

42.8

Weight (kDa)

5.36

Isoelectric Point (pI)

47.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 41 - 298 3.1e-56 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 42 - 293 2.1e-36 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010933)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G50310 AT4G36950 AT5G67080
fragaria_vesca FvH4_1g16150
malus_domestica MD02G1173600.v1.1 MD15G1285100.v1.1
prunus_persica Prupe.2G016400_v2.0.a1 Prupe.3G259700_v2.0.a1 Prupe.7G132100_v2.0.a1
pyrus_communis pycom02g14000
rosa_chinensis RchiOBHm_Chr2g0105831
rosa_laevigata RLG00000017463
rosa_multiflora Rmu_sc0004386.1_g000026
rosa_roxburghii Rroxscaffold_2G00137860
rosa_rugosa Rorug02G0130700
rosa_samantha Rh2AG181800 Rh2BG191600 Rh2CG186200 Rh2DG188200
rosa_wichuraiana Rw2G014250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 114
AccI GTMKAC 1 cut(s) 185
AccIII TCCGGA 1 cut(s) 1136
AclWI GGATC 1 cut(s) 852
AcoI YGGCCR 6 cut(s) 136, 207, 381, 406, 660, 1083
AcsI RAATTY 4 cut(s) 786, 999, 1010, 1039
AcuI CTGAAG 1 cut(s) 243
AfaI GTAC 2 cut(s) 362, 617
AfiI CCNNNNNNNGG 6 cut(s) 114, 415, 669, 976, 1085, 1143
AflIII ACRYGT 1 cut(s) 618
AgeI ACCGGT 1 cut(s) 712
AgsI TTSAA 4 cut(s) 40, 477, 929, 1039
AhlI ACTAGT 1 cut(s) 989
AluBI AGCT 6 cut(s) 147, 227, 391, 505, 751, 1047
AluI AGCT 6 cut(s) 147, 227, 391, 505, 751, 1047
Alw26I GTCTC 2 cut(s) 29, 1109
AlwI GGATC 1 cut(s) 852
Aor13HI TCCGGA 1 cut(s) 1136
ApeKI GCWGC 2 cut(s) 300, 375
ApoI RAATTY 4 cut(s) 786, 999, 1010, 1039
ArsI GACNNNNNNTTYG 2 cut(s) 1018, 1050
AsiGI ACCGGT 1 cut(s) 712
AspS9I GGNCC 4 cut(s) 15, 575, 728, 956
AsuC2I CCSGG 3 cut(s) 602, 706, 732
AsuHPI GGTGA 6 cut(s) 646, 712, 996, 1036, 1117, 1159
AsuII TTCGAA 1 cut(s) 324
AsuNHI GCTAGC 1 cut(s) 505
AvaII GGWCC 1 cut(s) 956
BanII GRGCYC 1 cut(s) 737
BarI GAAGNNNNNNTAC 2 cut(s) 136, 168
BbsI GAAGAC 2 cut(s) 210, 936
BbvI GCAGC 2 cut(s) 287, 362
BccI CCATC 4 cut(s) 199, 205, 691, 852
BceAI ACGGC 6 cut(s) 123, 194, 346, 351, 418, 879
BclI TGATCA 1 cut(s) 313
BcnI CCSGG 3 cut(s) 602, 706, 732
BcoDI GTCTC 2 cut(s) 29, 1109
BcuI ACTAGT 1 cut(s) 989
BfaI CTAG 2 cut(s) 506, 990
BglI GCCNNNNNGGC 1 cut(s) 569
BisI GCNGC 9 cut(s) 301, 370, 373, 376, 406, 537, 1083, 1097, 1100
BlsI GCNGC 9 cut(s) 302, 371, 374, 377, 407, 538, 1084, 1098, 1101
Bme1390I CCNGG 3 cut(s) 602, 706, 732
Bme18I GGWCC 1 cut(s) 956
BmgT120I GGNCC 4 cut(s) 15, 575, 728, 956
BmiI GGNNCC 1 cut(s) 280
BmrFI CCNGG 3 cut(s) 602, 706, 732
BmsI GCATC 1 cut(s) 861
BmtI GCTAGC 1 cut(s) 509
BpiI GAAGAC 2 cut(s) 210, 936
BplI GAGNNNNNCTC 2 cut(s) 926, 958
Bpu14I TTCGAA 1 cut(s) 324
BpuEI CTTGAG 2 cut(s) 230, 377
BpuMI CCSGG 3 cut(s) 602, 706, 732
BsaJI CCNNGG 3 cut(s) 108, 139, 601
BsaWI WCCGGW 3 cut(s) 581, 712, 1136
Bsc4I CCNNNNNNNGG 6 cut(s) 114, 415, 669, 976, 1085, 1143
Bse118I RCCGGY 4 cut(s) 408, 658, 712, 1085
BseAI TCCGGA 1 cut(s) 1136
BseDI CCNNGG 3 cut(s) 108, 139, 601
BseGI GGATG 3 cut(s) 883, 928, 1117
BseLI CCNNNNNNNGG 6 cut(s) 114, 415, 669, 976, 1085, 1143
BseMII CTCAG 2 cut(s) 858, 1008
BseRI GAGGAG 1 cut(s) 54
BseX3I CGGCCG 3 cut(s) 406, 660, 1083
BseXI GCAGC 2 cut(s) 287, 362
Bsh1285I CGRYCG 5 cut(s) 409, 582, 663, 1086, 1090
BshTI ACCGGT 1 cut(s) 712
BsiEI CGRYCG 5 cut(s) 409, 582, 663, 1086, 1090
BslI CCNNNNNNNGG 6 cut(s) 114, 415, 669, 976, 1085, 1143
BsmAI GTCTC 2 cut(s) 29, 1109
Bsp119I TTCGAA 1 cut(s) 324
Bsp1286I GDGCHC 1 cut(s) 737
Bsp13I TCCGGA 1 cut(s) 1136
Bsp1407I TGTACA 1 cut(s) 615
Bsp143I GATC 3 cut(s) 313, 385, 844
Bsp19I CCATGG 1 cut(s) 108
BspCNI CTCAG 2 cut(s) 859, 1009
BspEI TCCGGA 1 cut(s) 1136
BspLI GGNNCC 1 cut(s) 280
BspOI GCTAGC 1 cut(s) 509
BspPI GGATC 1 cut(s) 852
BspT104I TTCGAA 1 cut(s) 324
BsrFI RCCGGY 4 cut(s) 408, 658, 712, 1085
BsrGI TGTACA 1 cut(s) 615
BssAI RCCGGY 4 cut(s) 408, 658, 712, 1085
BssECI CCNNGG 3 cut(s) 108, 139, 601
BssMI GATC 3 cut(s) 313, 385, 844
BssT1I CCWWGG 1 cut(s) 108
Bst4CI ACNGT 2 cut(s) 157, 910
Bst6I CTCTTC 2 cut(s) 241, 789
BstAUI TGTACA 1 cut(s) 615
BstBI TTCGAA 1 cut(s) 324
BstC8I GCNNGC 5 cut(s) 128, 287, 367, 507, 660
BstDEI CTNAG 2 cut(s) 867, 1017
BstDSI CCRYGG 2 cut(s) 108, 139
BstEII GGTNACC 1 cut(s) 700
BstF5I GGATG 3 cut(s) 883, 928, 1117
BstKTI GATC 3 cut(s) 316, 388, 847
BstMAI GTCTC 2 cut(s) 29, 1109
BstMBI GATC 3 cut(s) 313, 385, 844
BstMCI CGRYCG 5 cut(s) 409, 582, 663, 1086, 1090
BstMWI GCNNNNNNNGC 4 cut(s) 144, 375, 545, 569
BstNSI RCATGY 1 cut(s) 622
BstPI GGTNACC 1 cut(s) 700
BstSCI CCNGG 3 cut(s) 600, 704, 730
BstV1I GCAGC 2 cut(s) 287, 362
BstV2I GAAGAC 2 cut(s) 210, 936
BstZI CGGCCG 3 cut(s) 406, 660, 1083
BtgI CCRYGG 2 cut(s) 108, 139
BtsCI GGATG 3 cut(s) 883, 928, 1117
BtsI GCAGTG 1 cut(s) 490
BtsIMutI CAGTG 1 cut(s) 490
Cac8I GCNNGC 5 cut(s) 128, 287, 367, 507, 660
Cfr10I RCCGGY 4 cut(s) 408, 658, 712, 1085
Cfr13I GGNCC 4 cut(s) 15, 575, 728, 956
Csp6I GTAC 2 cut(s) 361, 616
CspAI ACCGGT 1 cut(s) 712
CviAII CATG 5 cut(s) 21, 109, 619, 725, 1121
CviQI GTAC 2 cut(s) 361, 616
DdeI CTNAG 2 cut(s) 867, 1017
DpnI GATC 3 cut(s) 315, 387, 846
DpnII GATC 3 cut(s) 313, 385, 844
EaeI YGGCCR 6 cut(s) 136, 207, 381, 406, 660, 1083
EagI CGGCCG 3 cut(s) 406, 660, 1083
Eam1104I CTCTTC 2 cut(s) 241, 789
EarI CTCTTC 2 cut(s) 241, 789
EciI GGCGGA 1 cut(s) 707
EclXI CGGCCG 3 cut(s) 406, 660, 1083
Eco130I CCWWGG 1 cut(s) 108
Eco147I AGGCCT 1 cut(s) 459
Eco24I GRGCYC 1 cut(s) 737
Eco47I GGWCC 1 cut(s) 956
Eco52I CGGCCG 3 cut(s) 406, 660, 1083
Eco57I CTGAAG 1 cut(s) 243
Eco91I GGTNACC 1 cut(s) 700
EcoO109I RGGNCCY 2 cut(s) 15, 956
EcoO65I GGTNACC 1 cut(s) 700
EcoRI GAATTC 1 cut(s) 1039
EcoT14I CCWWGG 1 cut(s) 108
EcoT38I GRGCYC 1 cut(s) 737
ErhI CCWWGG 1 cut(s) 108
FaeI CATG 5 cut(s) 24, 112, 622, 728, 1124
FalI AAGNNNNNCTT 4 cut(s) 807, 839, 943, 975
FatI CATG 5 cut(s) 20, 108, 618, 724, 1120
FauI CCCGC 1 cut(s) 294
FbaI TGATCA 1 cut(s) 313
FblI GTMKAC 1 cut(s) 185
Fnu4HI GCNGC 9 cut(s) 301, 370, 373, 376, 406, 537, 1083, 1097, 1100
FokI GGATG 3 cut(s) 870, 935, 1124
FriOI GRGCYC 1 cut(s) 737
Fsp4HI GCNGC 9 cut(s) 301, 370, 373, 376, 406, 537, 1083, 1097, 1100
FspBI CTAG 2 cut(s) 506, 990
GluI GCNGC 9 cut(s) 301, 370, 373, 376, 406, 537, 1083, 1097, 1100
Hin1II CATG 5 cut(s) 24, 112, 622, 728, 1124
HindIII AAGCTT 3 cut(s) 145, 225, 749
HinfI GANTC 6 cut(s) 118, 591, 629, 653, 721, 776
HphI GGTGA 6 cut(s) 646, 712, 996, 1036, 1117, 1159
Hpy166II GTNNAC 4 cut(s) 186, 490, 637, 806
Hpy188I TCNGA 9 cut(s) 223, 308, 453, 557, 849, 901, 997, 1018, 1063
Hpy188III TCNNGA 6 cut(s) 247, 266, 394, 718, 791, 1137
Hpy8I GTNNAC 4 cut(s) 186, 490, 637, 806
Hpy99I CGWCG 2 cut(s) 500, 1063
HpyAV CCTTC 4 cut(s) 241, 331, 470, 835
HpyCH4III ACNGT 2 cut(s) 157, 910
HpyCH4IV ACGT 1 cut(s) 498
HpyF10VI GCNNNNNNNGC 4 cut(s) 144, 375, 545, 569
HpyF3I CTNAG 2 cut(s) 867, 1017
HpySE526I ACGT 1 cut(s) 498
Hsp92II CATG 5 cut(s) 24, 112, 622, 728, 1124
Kpn2I TCCGGA 1 cut(s) 1136
KroI GCCGGC 1 cut(s) 658
KroNI GCCGGC 1 cut(s) 660
Ksp22I TGATCA 1 cut(s) 313
Kzo9I GATC 3 cut(s) 313, 385, 844
LmnI GCTCC 1 cut(s) 284
Lsp1109I GCAGC 2 cut(s) 287, 362
LweI GCATC 1 cut(s) 861
MaeI CTAG 2 cut(s) 506, 990
MaeII ACGT 1 cut(s) 498
MaeIII GTNAC 4 cut(s) 700, 1024, 1105, 1147
MalI GATC 3 cut(s) 315, 387, 846
MboI GATC 3 cut(s) 313, 385, 844
MboII GAAGA 5 cut(s) 210, 228, 553, 806, 941
MfeI CAATTG 1 cut(s) 28
MhlI GDGCHC 1 cut(s) 737
MluCI AATT 5 cut(s) 28, 786, 999, 1010, 1039
MlyI GAGTC 3 cut(s) 600, 662, 785
MmeI TCCRAC 1 cut(s) 1041
MnlI CCTC 7 cut(s) 28, 72, 75, 94, 116, 913, 947
MroI TCCGGA 1 cut(s) 1136
MroNI GCCGGC 1 cut(s) 658
MseI TTAA 1 cut(s) 429
MspA1I CMGCKG 3 cut(s) 300, 369, 613
MspR9I CCNGG 3 cut(s) 602, 706, 732
MunI CAATTG 1 cut(s) 28
MwoI GCNNNNNNNGC 4 cut(s) 144, 375, 545, 569
NaeI GCCGGC 1 cut(s) 660
NciI CCSGG 3 cut(s) 602, 706, 732
NcoI CCATGG 1 cut(s) 108
NdeII GATC 3 cut(s) 313, 385, 844
NgoMIV GCCGGC 1 cut(s) 658
NheI GCTAGC 1 cut(s) 505
NlaIII CATG 5 cut(s) 24, 112, 622, 728, 1124
NlaIV GGNNCC 1 cut(s) 280
NmuCI GTSAC 4 cut(s) 700, 1024, 1105, 1147
NspI RCATGY 1 cut(s) 622
NspV TTCGAA 1 cut(s) 324
PceI AGGCCT 1 cut(s) 459
PciI ACATGT 1 cut(s) 618
PcsI WCGNNNNNNNCGW 1 cut(s) 1064
PdiI GCCGGC 1 cut(s) 660
PfeI GAWTC 3 cut(s) 118, 629, 721
PflMI CCANNNNNTGG 1 cut(s) 114
PinAI ACCGGT 1 cut(s) 712
PkrI GCNGC 9 cut(s) 302, 371, 374, 377, 407, 538, 1084, 1098, 1101
PleI GAGTC 3 cut(s) 599, 661, 784
PpsI GAGTC 3 cut(s) 599, 661, 784
PpuMI RGGWCCY 1 cut(s) 956
PscI ACATGT 1 cut(s) 618
Psp5II RGGWCCY 1 cut(s) 956
PspEI GGTNACC 1 cut(s) 700
PspN4I GGNNCC 1 cut(s) 280
PspPI GGNCC 4 cut(s) 15, 575, 728, 956
PspPPI RGGWCCY 1 cut(s) 956
RsaI GTAC 2 cut(s) 362, 617
RsaNI GTAC 2 cut(s) 361, 616
SaqAI TTAA 1 cut(s) 429
SatI GCNGC 9 cut(s) 301, 370, 373, 376, 406, 537, 1083, 1097, 1100
Sau3AI GATC 3 cut(s) 313, 385, 844
Sau96I GGNCC 4 cut(s) 15, 575, 728, 956
SchI GAGTC 3 cut(s) 600, 662, 785
ScrFI CCNGG 3 cut(s) 602, 706, 732
SduI GDGCHC 1 cut(s) 737
SfaNI GCATC 1 cut(s) 861
SfuI TTCGAA 1 cut(s) 324
SinI GGWCC 1 cut(s) 956
SmlI CTYRAG 2 cut(s) 245, 392
SmoI CTYRAG 2 cut(s) 245, 392
SpeI ACTAGT 1 cut(s) 989
Sse9I AATT 5 cut(s) 28, 786, 999, 1010, 1039
SseBI AGGCCT 1 cut(s) 459
SspI AATATT 1 cut(s) 514
SspMI CTAG 2 cut(s) 506, 990
StuI AGGCCT 1 cut(s) 459
StyD4I CCNGG 3 cut(s) 600, 704, 730
StyI CCWWGG 1 cut(s) 108
TaaI ACNGT 2 cut(s) 157, 910
TaiI ACGT 1 cut(s) 501
TaqI TCGA 7 cut(s) 121, 267, 324, 594, 651, 737, 983
TasI AATT 5 cut(s) 28, 786, 999, 1010, 1039
TatI WGTACW 1 cut(s) 615
TauI GCSGC 7 cut(s) 372, 375, 408, 539, 1085, 1099, 1102
TfiI GAWTC 3 cut(s) 118, 629, 721
Tru1I TTAA 1 cut(s) 429
Tru9I TTAA 1 cut(s) 429
TscAI CASTG 1 cut(s) 497
TseFI GTSAC 4 cut(s) 700, 1024, 1105, 1147
TseI GCWGC 2 cut(s) 300, 375
Tsp45I GTSAC 4 cut(s) 700, 1024, 1105, 1147
TspDTI ATGAA 1 cut(s) 461
TspGWI ACGGA 1 cut(s) 1124
TspRI CASTG 1 cut(s) 497
Van91I CCANNNNNTGG 1 cut(s) 114
VpaK11BI GGWCC 1 cut(s) 956
XapI RAATTY 4 cut(s) 786, 999, 1010, 1039
XceI RCATGY 1 cut(s) 622
XmiI GTMKAC 1 cut(s) 185
XspI CTAG 2 cut(s) 506, 990
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.