AT5G67080

Mitogen-activated protein kinase kinase kinase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
26772644 .. 26773979
1336 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G67080.1

Sequence Viewer

Length: 1035 bp
ATGGAGTGGATTCGAGGAGAAACTATCGGATACGGAACTTTTTCTACAGTAAGTCTAGCGACGCGGTCTAATAACGATTCCGGCGAGTTTCCTCCGTTAATGGCTGTGAAATCTGCAGACTCATACGGCGCTGCTTCTCTGGCAAACGAGAAATCAGTTCTAGATAATCTCGGAGACGATTGCAACGAGATCGTACGGTGTTTCGGCGAGGATCGGACGGTCGAAAACGGTGAAGAGATGCATAATTTGTTCTTGGAATACGCTTCTAGAGGAAGCTTAGAGAGTTATCTTAAGAAATTAGCCGGTGAAGGTGTACCGGAATCCACCGTGCGTCGCCACACAGGATCGGTGCTTAGAGGTCTACGACACATCCACGCTAACGGATTCGCTCACTGTGATTTAAAACTCGGGAATATTCTGTTGTTCGGTGACGGCGCCGTTAAGATTGCGGATTTTGGATTGGCGAAGAGAATTGGGGATTTAACGGCGTTAAATTACGGTGTGCAGATTAGAGGTACGCCGTTGTACATGGCGCCGGAATCTGTTAACGATAACGAGTACGGATCAGAAGGTGACGTGTGGGCTTTAGGATGCGTAGTAGTTGAGATGTTTAGTGGTAAAACGGCATGGAGTTTAAAAGAAGGGTCGAACTTCATGTCGTTGTTGTTACGCATCGGTGTTGGTGACGAGGTTCCGATGATTCCCGAGGAGTTGTCGGAACAAGGAAGAGATTTTTTGTCAAAGTGTTTCGTTAAAGATCCCAAAAAGAGATGGACGGCTGAGATGCTTCTAAACCATCCATTTGTAACCGTCGATGTTGATCACGACGTTTTAGTCAAAGAAGAAGATTTCGTTGTTAATATGAAAACAGAGGACGTCTCGACATCGCCGAGATGCCCATTCGAATTTCCCGATTGGGTTTCGGTTTCTTCCGGTTCACAAACGATCGATTCGCCGGATGAGAGAGTTGCTAGTTTGGTGACTGATATGATCCCTGATTGGTCTGTTACCAATAGCTGGGTCACCGTACGGTGA

Protein Analysis

344

Amino Acids

37.92

Weight (kDa)

4.71

Isoelectric Point (pI)

35.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 5 - 269 1.1e-51 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 6 - 264 2.8e-30 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010933)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 833
AatII GACGTC 1 cut(s) 879
AccB1I GGYRCC 2 cut(s) 434, 532
AccB7I CCANNNNNTGG 1 cut(s) 1017
AccI GTMKAC 1 cut(s) 361
AccII CGCG 1 cut(s) 64
AciI CCGC 2 cut(s) 64, 449
AclWI GGATC 5 cut(s) 219, 352, 571, 752, 985
AcsI RAATTY 1 cut(s) 905
AcyI GRCGYC 3 cut(s) 435, 533, 876
AfaI GTAC 6 cut(s) 195, 315, 517, 527, 560, 1029
AfiI CCNNNNNNNGG 1 cut(s) 1017
AflII CTTAAG 1 cut(s) 290
AflIII ACRYGT 1 cut(s) 576
AjiI CACGTC 1 cut(s) 577
AluBI AGCT 2 cut(s) 276, 1017
AluI AGCT 2 cut(s) 276, 1017
Alw26I GTCTC 2 cut(s) 168, 883
AlwI GGATC 5 cut(s) 219, 352, 571, 752, 985
Ama87I CYCGRG 2 cut(s) 407, 704
ApeKI GCWGC 1 cut(s) 131
ApoI RAATTY 1 cut(s) 905
ArsI GACNNNNNNTTYG 2 cut(s) 641, 673
Asp700I GAANNNNTTC 1 cut(s) 40
AspLEI GCGC 3 cut(s) 131, 437, 535
AsuHPI GGTGA 7 cut(s) 242, 317, 440, 584, 695, 991, 1015
AsuII TTCGAA 1 cut(s) 903
AvaI CYCGRG 2 cut(s) 407, 704
BanI GGYRCC 2 cut(s) 434, 532
BbvI GCAGC 1 cut(s) 118
BccI CCATC 2 cut(s) 765, 804
BceAI ACGGC 7 cut(s) 142, 422, 448, 501, 505, 639, 792
BcgI CGANNNNNNTGC 2 cut(s) 172, 206
BciVI GTATCC 1 cut(s) 23
BclI TGATCA 1 cut(s) 820
BcoDI GTCTC 2 cut(s) 168, 883
BfaI CTAG 4 cut(s) 56, 161, 267, 972
BfmI CTRYAG 2 cut(s) 45, 114
BfoI RGCGCY 3 cut(s) 132, 438, 536
BfrI CTTAAG 1 cut(s) 290
BfuI GTATCC 1 cut(s) 23
BisI GCNGC 1 cut(s) 132
BlsI GCNGC 1 cut(s) 133
BmeT110I CYCGRG 2 cut(s) 407, 704
BmgBI CACGTC 1 cut(s) 577
BmiI GGNNCC 3 cut(s) 436, 534, 693
BmsI GCATC 5 cut(s) 228, 581, 681, 774, 884
BplI GAGNNNNNCTC 2 cut(s) 863, 895
Bpu14I TTCGAA 1 cut(s) 903
Bsa29I ATCGAT 1 cut(s) 948
BsaBI GATNNNNATC 1 cut(s) 819
BsaHI GRCGYC 3 cut(s) 435, 533, 876
BsaJI CCNNGG 1 cut(s) 705
BsaWI WCCGGW 2 cut(s) 316, 932
Bsc4I CCNNNNNNNGG 1 cut(s) 1017
Bse118I RCCGGY 1 cut(s) 302
Bse8I GATNNNNATC 1 cut(s) 819
BseCI ATCGAT 1 cut(s) 948
BseDI CCNNGG 1 cut(s) 705
BseGI GGATG 4 cut(s) 369, 596, 796, 964
BseJI GATNNNNATC 1 cut(s) 819
BseLI CCNNNNNNNGG 1 cut(s) 1017
BseMII CTCAG 1 cut(s) 771
BseRI GAGGAG 2 cut(s) 30, 722
BseXI GCAGC 1 cut(s) 118
BseYI CCCAGC 1 cut(s) 1017
BsgI GTGCAG 1 cut(s) 524
Bsh1236I CGCG 1 cut(s) 64
Bsh1285I CGRYCG 2 cut(s) 222, 948
BshNI GGYRCC 2 cut(s) 434, 532
BshVI ATCGAT 1 cut(s) 948
BsiEI CGRYCG 2 cut(s) 222, 948
BsiHKCI CYCGRG 2 cut(s) 407, 704
BsiSI CCGG 6 cut(s) 81, 303, 317, 536, 933, 956
BsiWI CGTACG 2 cut(s) 193, 1027
BslI CCNNNNNNNGG 1 cut(s) 1017
BsmAI GTCTC 2 cut(s) 168, 883
BsmBI CGTCTC 2 cut(s) 168, 883
BsoBI CYCGRG 2 cut(s) 407, 704
Bsp119I TTCGAA 1 cut(s) 903
Bsp1407I TGTACA 1 cut(s) 525
Bsp143I GATC 8 cut(s) 189, 211, 344, 563, 757, 820, 945, 990
BspACI CCGC 2 cut(s) 64, 449
BspCNI CTCAG 1 cut(s) 772
BspDI ATCGAT 1 cut(s) 948
BspFNI CGCG 1 cut(s) 64
BspLI GGNNCC 3 cut(s) 436, 534, 693
BspMAI CTGCAG 1 cut(s) 118
BspPI GGATC 5 cut(s) 219, 352, 571, 752, 985
BspT104I TTCGAA 1 cut(s) 903
BspT107I GGYRCC 2 cut(s) 434, 532
BspTI CTTAAG 1 cut(s) 290
BsrFI RCCGGY 1 cut(s) 302
BsrGI TGTACA 1 cut(s) 525
BssAI RCCGGY 1 cut(s) 302
BssECI CCNNGG 1 cut(s) 705
BssMI GATC 8 cut(s) 189, 211, 344, 563, 757, 820, 945, 990
BssNI GRCGYC 3 cut(s) 435, 533, 876
Bst6I CTCTTC 3 cut(s) 228, 461, 721
BstACI GRCGYC 3 cut(s) 435, 533, 876
BstAFI CTTAAG 1 cut(s) 290
BstAUI TGTACA 1 cut(s) 525
BstBI TTCGAA 1 cut(s) 903
BstDEI CTNAG 3 cut(s) 277, 353, 780
BstEII GGTNACC 1 cut(s) 1021
BstF5I GGATG 4 cut(s) 369, 596, 796, 964
BstFNI CGCG 1 cut(s) 64
BstH2I RGCGCY 3 cut(s) 132, 438, 536
BstHHI GCGC 3 cut(s) 131, 437, 535
BstKTI GATC 8 cut(s) 192, 214, 347, 566, 760, 823, 948, 993
BstMAI GTCTC 2 cut(s) 168, 883
BstMBI GATC 8 cut(s) 189, 211, 344, 563, 757, 820, 945, 990
BstMCI CGRYCG 2 cut(s) 222, 948
BstMWI GCNNNNNNNGC 1 cut(s) 140
BstPI GGTNACC 1 cut(s) 1021
BstSFI CTRYAG 2 cut(s) 45, 114
BstUI CGCG 1 cut(s) 64
BstV1I GCAGC 1 cut(s) 118
BstX2I RGATCY 1 cut(s) 757
BstYI RGATCY 1 cut(s) 757
Bsu15I ATCGAT 1 cut(s) 948
BsuI GTATCC 1 cut(s) 23
BsuTUI ATCGAT 1 cut(s) 948
BtgZI GCGATG 1 cut(s) 870
BtrI CACGTC 1 cut(s) 577
BtsCI GGATG 4 cut(s) 369, 596, 796, 964
BtsIMutI CAGTG 1 cut(s) 391
CfoI GCGC 3 cut(s) 131, 437, 535
Cfr10I RCCGGY 1 cut(s) 302
ClaI ATCGAT 1 cut(s) 948
CseI GACGC 2 cut(s) 70, 320
Csp6I GTAC 6 cut(s) 194, 314, 516, 526, 559, 1028
CviAII CATG 3 cut(s) 529, 627, 655
CviJI RGCY 6 cut(s) 104, 276, 302, 584, 779, 1017
CviKI_1 RGCY 6 cut(s) 104, 276, 302, 584, 779, 1017
CviQI GTAC 6 cut(s) 194, 314, 516, 526, 559, 1028
DdeI CTNAG 3 cut(s) 277, 353, 780
DinI GGCGCC 2 cut(s) 436, 534
DpnI GATC 8 cut(s) 191, 213, 346, 565, 759, 822, 947, 992
DpnII GATC 8 cut(s) 189, 211, 344, 563, 757, 820, 945, 990
DraI TTTAAA 2 cut(s) 402, 636
DrdI GACNNNNNNGTC 1 cut(s) 833
DseDI GACNNNNNNGTC 1 cut(s) 833
Eam1104I CTCTTC 3 cut(s) 228, 461, 721
EarI CTCTTC 3 cut(s) 228, 461, 721
Eco88I CYCGRG 2 cut(s) 407, 704
Eco91I GGTNACC 1 cut(s) 1021
EcoO65I GGTNACC 1 cut(s) 1021
EcoT22I ATGCAT 1 cut(s) 243
EgeI GGCGCC 2 cut(s) 436, 534
EheI GGCGCC 2 cut(s) 436, 534
Esp3I CGTCTC 2 cut(s) 168, 883
FaeI CATG 3 cut(s) 532, 630, 658
FaiI YATR 7 cut(s) 124, 243, 530, 628, 656, 863, 989
FatI CATG 3 cut(s) 528, 626, 654
FbaI TGATCA 1 cut(s) 820
FblI GTMKAC 1 cut(s) 361
Fnu4HI GCNGC 1 cut(s) 132
FokI GGATG 4 cut(s) 356, 603, 783, 971
Fsp4HI GCNGC 1 cut(s) 132
FspBI CTAG 4 cut(s) 56, 161, 267, 972
GlaI GCGC 3 cut(s) 130, 436, 534
GluI GCNGC 1 cut(s) 132
GsaI CCCAGC 1 cut(s) 1021
HaeII RGCGCY 3 cut(s) 132, 438, 536
HapII CCGG 6 cut(s) 81, 303, 317, 536, 933, 956
HgaI GACGC 2 cut(s) 70, 320
HhaI GCGC 3 cut(s) 131, 437, 535
Hin1I GRCGYC 3 cut(s) 435, 533, 876
Hin1II CATG 3 cut(s) 532, 630, 658
Hin6I GCGC 3 cut(s) 129, 435, 533
HinP1I GCGC 3 cut(s) 129, 435, 533
HincII GTYRAC 1 cut(s) 547
HindII GTYRAC 1 cut(s) 547
HindIII AAGCTT 1 cut(s) 274
HinfI GANTC 8 cut(s) 10, 77, 119, 320, 384, 539, 700, 950
HpaI GTTAAC 1 cut(s) 547
HpaII CCGG 6 cut(s) 81, 303, 317, 536, 933, 956
HphI GGTGA 7 cut(s) 242, 317, 440, 584, 695, 991, 1015
Hpy166II GTNNAC 4 cut(s) 314, 362, 547, 938
Hpy188I TCNGA 6 cut(s) 29, 173, 216, 568, 696, 718
Hpy188III TCNNGA 7 cut(s) 161, 267, 409, 704, 824, 880, 911
Hpy8I GTNNAC 4 cut(s) 314, 362, 547, 938
Hpy99I CGWCG 4 cut(s) 64, 336, 815, 830
HpyAV CCTTC 3 cut(s) 302, 563, 635
HpyCH4IV ACGT 3 cut(s) 576, 828, 876
HpyCH4V TGCA 4 cut(s) 116, 183, 241, 505
HpyF10VI GCNNNNNNNGC 1 cut(s) 140
HpyF3I CTNAG 3 cut(s) 277, 353, 780
HpySE526I ACGT 3 cut(s) 576, 828, 876
Hsp92I GRCGYC 3 cut(s) 435, 533, 876
Hsp92II CATG 3 cut(s) 532, 630, 658
HspAI GCGC 3 cut(s) 129, 435, 533
KasI GGCGCC 2 cut(s) 434, 532
Ksp22I TGATCA 1 cut(s) 820
KspAI GTTAAC 1 cut(s) 547
Kzo9I GATC 8 cut(s) 189, 211, 344, 563, 757, 820, 945, 990
Lsp1109I GCAGC 1 cut(s) 118
LweI GCATC 5 cut(s) 228, 581, 681, 774, 884
MaeI CTAG 4 cut(s) 56, 161, 267, 972
MaeII ACGT 3 cut(s) 576, 828, 876
MaeIII GTNAC 8 cut(s) 428, 572, 666, 683, 805, 979, 1006, 1021
MalI GATC 8 cut(s) 191, 213, 346, 565, 759, 822, 947, 992
MboI GATC 8 cut(s) 189, 211, 344, 563, 757, 820, 945, 990
MboII GAAGA 6 cut(s) 245, 478, 738, 854, 857, 921
MflI RGATCY 1 cut(s) 757
MluCI AATT 5 cut(s) 244, 296, 471, 493, 905
Mly113I GGCGCC 2 cut(s) 435, 533
MlyI GAGTC 1 cut(s) 113
MmeI TCCRAC 1 cut(s) 696
MnlI CCTC 9 cut(s) 8, 102, 202, 263, 350, 506, 682, 700, 865
Mph1103I ATGCAT 1 cut(s) 243
MroXI GAANNNNTTC 1 cut(s) 40
MspCI CTTAAG 1 cut(s) 290
MspI CCGG 6 cut(s) 81, 303, 317, 536, 933, 956
MvnI CGCG 1 cut(s) 64
MwoI GCNNNNNNNGC 1 cut(s) 140
NarI GGCGCC 2 cut(s) 435, 533
NdeII GATC 8 cut(s) 189, 211, 344, 563, 757, 820, 945, 990
NlaIII CATG 3 cut(s) 532, 630, 658
NlaIV GGNNCC 3 cut(s) 436, 534, 693
NmeAIII GCCGAG 1 cut(s) 915
NmuCI GTSAC 5 cut(s) 428, 572, 683, 979, 1021
NsiI ATGCAT 1 cut(s) 243
NspV TTCGAA 1 cut(s) 903
PcsI WCGNNNNNNNCGW 4 cut(s) 81, 183, 887, 909
PdmI GAANNNNTTC 1 cut(s) 40
PfeI GAWTC 7 cut(s) 10, 77, 320, 384, 539, 700, 950
Pfl23II CGTACG 2 cut(s) 193, 1027
PflFI GACNNNGTC 1 cut(s) 64
PflMI CCANNNNNTGG 1 cut(s) 1017
PkrI GCNGC 1 cut(s) 133
Ple19I CGATCG 1 cut(s) 948
PleI GAGTC 1 cut(s) 113
PluTI GGCGCC 2 cut(s) 438, 536
PpsI GAGTC 1 cut(s) 113
PspEI GGTNACC 1 cut(s) 1021
PspFI CCCAGC 1 cut(s) 1017
PspLI CGTACG 2 cut(s) 193, 1027
PspN4I GGNNCC 3 cut(s) 436, 534, 693
PsrI GAACNNNNNNTAC 2 cut(s) 28, 60
PstI CTGCAG 1 cut(s) 118
PsuI RGATCY 1 cut(s) 757
PsyI GACNNNGTC 1 cut(s) 64
PvuI CGATCG 1 cut(s) 948
RsaI GTAC 6 cut(s) 195, 315, 517, 527, 560, 1029
RsaNI GTAC 6 cut(s) 194, 314, 516, 526, 559, 1028
SatI GCNGC 1 cut(s) 132
Sau3AI GATC 8 cut(s) 189, 211, 344, 563, 757, 820, 945, 990
SchI GAGTC 1 cut(s) 113
SfaNI GCATC 5 cut(s) 228, 581, 681, 774, 884
SfcI CTRYAG 2 cut(s) 45, 114
SfoI GGCGCC 2 cut(s) 436, 534
SfuI TTCGAA 1 cut(s) 903
SmlI CTYRAG 1 cut(s) 290
SmoI CTYRAG 1 cut(s) 290
Sse9I AATT 5 cut(s) 244, 296, 471, 493, 905
SsiI CCGC 2 cut(s) 64, 449
SspDI GGCGCC 2 cut(s) 434, 532
SspI AATATT 1 cut(s) 415
SspMI CTAG 4 cut(s) 56, 161, 267, 972
TaiI ACGT 3 cut(s) 579, 831, 879
TaqI TCGA 7 cut(s) 13, 222, 647, 813, 881, 903, 948
TasI AATT 5 cut(s) 244, 296, 471, 493, 905
TatI WGTACW 1 cut(s) 525
TfiI GAWTC 7 cut(s) 10, 77, 320, 384, 539, 700, 950
TscAI CASTG 1 cut(s) 398
TseFI GTSAC 5 cut(s) 428, 572, 683, 979, 1021
TseI GCWGC 1 cut(s) 131
Tsp45I GTSAC 5 cut(s) 428, 572, 683, 979, 1021
TspDTI ATGAA 2 cut(s) 643, 878
TspGWI ACGGA 4 cut(s) 48, 84, 396, 576
TspRI CASTG 1 cut(s) 398
Tth111I GACNNNGTC 1 cut(s) 64
Van91I CCANNNNNTGG 1 cut(s) 1017
Vha464I CTTAAG 1 cut(s) 290
XapI RAATTY 1 cut(s) 905
XbaI TCTAGA 2 cut(s) 160, 266
XmiI GTMKAC 1 cut(s) 361
XmnI GAANNNNTTC 1 cut(s) 40
XspI CTAG 4 cut(s) 56, 161, 267, 972
ZraI GACGTC 1 cut(s) 877
Zsp2I ATGCAT 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.