Rorug02G0130700

Serine/Threonine protein kinases, catalytic domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0010933
Physical Location & Seq
Forward (+)
11298999 .. 11302327
3329 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0130700.1

Sequence Viewer

Length: 1449 bp
ATGACAGAAATAGTAGAAGAAACACTGTGTGAGCTGAGGCAAACCTTCAAGAGTGGTAAAACCAAAAGTGTTGCATGGAGGAAAACCCAACTCAGTGCTCTTCGTCAGCTCGTCAAAGATAATGAGGAAAAGGTCTTTGAAGCACTCTATCAAGATCTTGGCAAGCACCCGATTGAATCTTACAGGGATGAGATTGGAGTTGTGGTGAAATCGATCAATCATACTTTGAGCAATTTAGACAAATGGGTGGCACCTACAAAGGGTAAATTACCGTTGCTTTTTTTTCCGAGTAGGGGAGAGGTGCTGCCGGAACCACTCGGCGTAGTTCTCATCTTTGCATCTTGGAACTTCCCAATATCTTTGGCTTTGGATCCTGTAATAGGAGCAATAGCTGCAGGGAATGCAGTGGTTCTAAAACCTTCAGACCAAGCACCGGCATGCTCTTCTTTAATTGCTAAAACCATACCTCAATACATGGACCCTAAAGCCGTAAGAATCATCGAGGGTGGACCACAAATTTGTGAAAAACTCCTGCAGCATAAGTGGGATAAGATATTCTTTACTGGAAGTCCGCAGGTAGGGCGCGTTGTCATGACTGCAGCTGCCAAGCATTTAACACCTGTTACACTAGAGCTGGGTGGAAAATGCCCTGTCATCCTTGATTCACTCTCCAATCCTTCGGATTTAAAGGTGGCAATCAAAAGAATTGTAAGTGGAAAGTGGGGGCCTTGCAGTGGGCAGGCATGTATAGGAATAGATTATATGCTCGTTGAGGAAAAGCTTGCTCCTACTGTGATCGAATTGTTAAAGAAAACGATGAAGAGATTTTATACTGAAAGCCCAAAAGATGCAAATTGCATAGCCAGAATTGTAAATAAGCACCACTTTCAGAGAGTGCAGAATCTCCTCAAAGACCCTCTTGTTGAAGCTTCCATTGTACATGGTGGTTCACTGGATGAAGAAAACCTGTTCATTGAGCCAATAATCTTGTTAGATCCACCACTTGATGCTGCAATCATGAATGAAGAAATCTTTGGCCCACTACTTCCAGTAATCACTTTGAAGAACATTCAAGAAAGCATCGAATTCATAAATGAAAGGCCAAAACCTCTAACCATTTACGCCTTCACCAAAGATGAAAACTTTAAGAAGAAAATTTTATCAGAAACATCCTCAGGGAGTGTGACTTTCAATGACGTCTTGATTCAATTTCTCTGTGATGCTCTACCCTTTGGTGGTGTTGGTTCCAGTGGATTTGGGAGGTACCATGGGAAGTTTTCTTTTGATACTTTCAGCCATGAGAAAGCAGTTCTGCGAGCAGGCTTCTTCCCTGAACTTGAGCCTAGATATCCTCCTTGGAATAACTTCAAAATGGCATTTATCAAACTTGCCTATGACCTTGACTACTTTGGACTATTTCTGCTCCTTGTTGGACTTAAAAGGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

482

Amino Acids

53.75

Weight (kDa)

7.98

Isoelectric Point (pI)

42.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldedh PF00171 5 - 437 4.9e-81 Aldehyde dehydrogenase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010933)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G50310 AT4G36950 AT5G67080
fragaria_vesca FvH4_1g16150
malus_domestica MD02G1173600.v1.1 MD15G1285100.v1.1
prunus_persica Prupe.2G016400_v2.0.a1 Prupe.3G259700_v2.0.a1 Prupe.7G132100_v2.0.a1
pyrus_communis pycom02g14000
rosa_chinensis RchiOBHm_Chr2g0105831
rosa_laevigata RLG00000017463
rosa_multiflora Rmu_sc0004386.1_g000026
rosa_roxburghii Rroxscaffold_2G00137860
rosa_rugosa Rorug02G0130700
rosa_samantha Rh2AG181800 Rh2BG191600 Rh2CG186200 Rh2DG188200
rosa_wichuraiana Rw2G014250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1200
Acc36I ACCTGC 1 cut(s) 565
Acc65I GGTACC 1 cut(s) 1263
AccB1I GGYRCC 2 cut(s) 250, 1263
AccII CGCG 1 cut(s) 585
AciI CCGC 1 cut(s) 572
AclWI GGATC 3 cut(s) 365, 378, 989
AcsI RAATTY 3 cut(s) 516, 1085, 1155
AcuI CTGAAG 1 cut(s) 405
AcyI GRCGYC 1 cut(s) 1197
AdeI CACNNNGTG 1 cut(s) 29
AfaI GTAC 2 cut(s) 939, 1265
AfiI CCNNNNNNNGG 7 cut(s) 260, 293, 380, 433, 578, 734, 1235
AgsI TTSAA 9 cut(s) 49, 140, 176, 926, 1063, 1073, 1192, 1208, 1369
AjuI GAANNNNNNNTTGG 2 cut(s) 1017, 1049
AluBI AGCT 7 cut(s) 34, 109, 392, 602, 634, 781, 929
AluI AGCT 7 cut(s) 34, 109, 392, 602, 634, 781, 929
Alw21I GWGCWC 1 cut(s) 100
AlwI GGATC 3 cut(s) 365, 378, 989
AoxI GGCC 3 cut(s) 725, 1036, 1100
ApeKI GCWGC 6 cut(s) 304, 392, 535, 599, 602, 1010
ApoI RAATTY 3 cut(s) 516, 1085, 1155
ArsI GACNNNNNNTTYG 2 cut(s) 501, 533
Asp700I GAANNNNTTC 1 cut(s) 1364
Asp718I GGTACC 1 cut(s) 1263
AspLEI GCGC 1 cut(s) 585
AspS9I GGNCC 4 cut(s) 478, 509, 725, 1037
AsuHPI GGTGA 2 cut(s) 217, 1120
AvaII GGWCC 2 cut(s) 478, 509
AxyI CCTNAGG 1 cut(s) 1174
BamHI GGATCC 1 cut(s) 370
BanI GGYRCC 2 cut(s) 250, 1263
Bbv12I GWGCWC 1 cut(s) 100
BbvCI CCTCAGC 1 cut(s) 35
BbvI GCAGC 6 cut(s) 291, 379, 547, 589, 611, 997
BceAI ACGGC 1 cut(s) 473
BfaI CTAG 2 cut(s) 629, 1344
BfmI CTRYAG 3 cut(s) 393, 533, 597
BfuAI ACCTGC 1 cut(s) 565
BglII AGATCT 1 cut(s) 154
BisI GCNGC 6 cut(s) 305, 393, 536, 600, 603, 1011
BlsI GCNGC 6 cut(s) 306, 394, 537, 601, 604, 1012
Bme18I GGWCC 2 cut(s) 478, 509
BmgT120I GGNCC 4 cut(s) 478, 509, 725, 1037
BmiI GGNNCC 7 cut(s) 252, 312, 372, 480, 726, 1246, 1265
BmsI GCATC 5 cut(s) 347, 838, 997, 1089, 1210
Bpu10I CCTNAGC 1 cut(s) 35
BpuEI CTTGAG 1 cut(s) 1358
Bsa29I ATCGAT 1 cut(s) 212
BsaHI GRCGYC 1 cut(s) 1197
BsaJI CCNNGG 2 cut(s) 1267, 1355
BsaXI ACNNNNNCTCC 2 cut(s) 189, 219
Bsc4I CCNNNNNNNGG 7 cut(s) 260, 293, 380, 433, 578, 734, 1235
Bse118I RCCGGY 1 cut(s) 433
Bse1I ACTGG 4 cut(s) 568, 957, 1049, 1248
Bse21I CCTNAGG 1 cut(s) 1174
BseCI ATCGAT 1 cut(s) 212
BseDI CCNNGG 2 cut(s) 1267, 1355
BseGI GGATG 4 cut(s) 193, 654, 961, 1169
BseLI CCNNNNNNNGG 7 cut(s) 260, 293, 380, 433, 578, 734, 1235
BseMII CTCAG 3 cut(s) 26, 106, 1188
BseNI ACTGG 4 cut(s) 568, 957, 1049, 1248
BseRI GAGGAG 1 cut(s) 896
BseXI GCAGC 6 cut(s) 291, 379, 547, 589, 611, 997
BseYI CCCAGC 1 cut(s) 634
BsgI GTGCAG 1 cut(s) 917
Bsh1236I CGCG 1 cut(s) 585
BshFI GGCC 3 cut(s) 727, 1038, 1102
BshNI GGYRCC 2 cut(s) 250, 1263
BshVI ATCGAT 1 cut(s) 212
BsiHKAI GWGCWC 1 cut(s) 100
BsiSI CCGG 2 cut(s) 308, 434
BslI CCNNNNNNNGG 7 cut(s) 260, 293, 380, 433, 578, 734, 1235
BsmI GAATGC 1 cut(s) 406
BsnI GGCC 3 cut(s) 727, 1038, 1102
Bsp1286I GDGCHC 1 cut(s) 100
Bsp1407I TGTACA 1 cut(s) 937
Bsp143I GATC 5 cut(s) 154, 213, 370, 795, 994
Bsp19I CCATGG 1 cut(s) 1267
BspACI CCGC 1 cut(s) 572
BspANI GGCC 3 cut(s) 727, 1038, 1102
BspCNI CTCAG 3 cut(s) 27, 105, 1187
BspDI ATCGAT 1 cut(s) 212
BspFNI CGCG 1 cut(s) 585
BspHI TCATGA 2 cut(s) 591, 1017
BspLI GGNNCC 7 cut(s) 252, 312, 372, 480, 726, 1246, 1265
BspMAI CTGCAG 3 cut(s) 397, 537, 601
BspMI ACCTGC 1 cut(s) 565
BspPI GGATC 3 cut(s) 365, 378, 989
BspQI GCTCTTC 2 cut(s) 105, 448
BspT107I GGYRCC 2 cut(s) 250, 1263
BsrFI RCCGGY 1 cut(s) 433
BsrGI TGTACA 1 cut(s) 937
BsrI ACTGG 4 cut(s) 568, 957, 1049, 1248
BssAI RCCGGY 1 cut(s) 433
BssECI CCNNGG 2 cut(s) 1267, 1355
BssMI GATC 5 cut(s) 154, 213, 370, 795, 994
BssNI GRCGYC 1 cut(s) 1197
BssT1I CCWWGG 2 cut(s) 1267, 1355
Bst4CI ACNGT 3 cut(s) 27, 273, 793
Bst6I CTCTTC 3 cut(s) 105, 448, 815
BstACI GRCGYC 1 cut(s) 1197
BstAPI GCANNNNNTGC 2 cut(s) 392, 401
BstAUI TGTACA 1 cut(s) 937
BstC8I GCNNGC 6 cut(s) 164, 439, 741, 783, 1317, 1321
BstDEI CTNAG 3 cut(s) 35, 92, 1174
BstDSI CCRYGG 1 cut(s) 1267
BstENI CCTNNNNNAGG 1 cut(s) 378
BstF5I GGATG 4 cut(s) 193, 654, 961, 1169
BstFNI CGCG 1 cut(s) 585
BstHHI GCGC 1 cut(s) 585
BstKTI GATC 5 cut(s) 157, 216, 373, 798, 997
BstMBI GATC 5 cut(s) 154, 213, 370, 795, 994
BstMWI GCNNNNNNNGC 3 cut(s) 392, 401, 580
BstNSI RCATGY 2 cut(s) 441, 747
BstSFI CTRYAG 3 cut(s) 393, 533, 597
BstUI CGCG 1 cut(s) 585
BstV1I GCAGC 6 cut(s) 291, 379, 547, 589, 611, 997
BstX2I RGATCY 3 cut(s) 154, 370, 994
BstYI RGATCY 3 cut(s) 154, 370, 994
Bsu15I ATCGAT 1 cut(s) 212
Bsu36I CCTNAGG 1 cut(s) 1174
BsuRI GGCC 3 cut(s) 727, 1038, 1102
BsuTUI ATCGAT 1 cut(s) 212
BtgI CCRYGG 1 cut(s) 1267
BtsCI GGATG 4 cut(s) 193, 654, 961, 1169
BtsI GCAGTG 2 cut(s) 411, 739
BtsIMutI CAGTG 6 cut(s) 23, 100, 411, 739, 950, 1255
BveI ACCTGC 1 cut(s) 565
Cac8I GCNNGC 6 cut(s) 164, 439, 741, 783, 1317, 1321
CciI TCATGA 2 cut(s) 591, 1017
CfoI GCGC 1 cut(s) 585
Cfr10I RCCGGY 1 cut(s) 433
Cfr13I GGNCC 4 cut(s) 478, 509, 725, 1037
ClaI ATCGAT 1 cut(s) 212
Csp6I GTAC 2 cut(s) 938, 1264
CviAII CATG 9 cut(s) 75, 438, 475, 592, 744, 941, 1018, 1268, 1298
CviQI GTAC 2 cut(s) 938, 1264
DdeI CTNAG 3 cut(s) 35, 92, 1174
DpnI GATC 5 cut(s) 156, 215, 372, 797, 996
DpnII GATC 5 cut(s) 154, 213, 370, 795, 994
DraI TTTAAA 1 cut(s) 687
DraIII CACNNNGTG 1 cut(s) 29
Eam1104I CTCTTC 3 cut(s) 105, 448, 815
EarI CTCTTC 3 cut(s) 105, 448, 815
Eco130I CCWWGG 2 cut(s) 1267, 1355
Eco32I GATATC 1 cut(s) 1349
Eco47I GGWCC 2 cut(s) 478, 509
Eco57I CTGAAG 1 cut(s) 405
Eco81I CCTNAGG 1 cut(s) 1174
EcoNI CCTNNNNNAGG 1 cut(s) 378
EcoO109I RGGNCCY 1 cut(s) 725
EcoRI GAATTC 1 cut(s) 1085
EcoRV GATATC 1 cut(s) 1349
EcoT14I CCWWGG 2 cut(s) 1267, 1355
ErhI CCWWGG 2 cut(s) 1267, 1355
FaeI CATG 9 cut(s) 78, 441, 478, 595, 747, 944, 1021, 1271, 1301
FalI AAGNNNNNCTT 6 cut(s) 542, 574, 869, 901, 903, 935
FatI CATG 9 cut(s) 74, 437, 474, 591, 743, 940, 1017, 1267, 1297
Fnu4HI GCNGC 6 cut(s) 305, 393, 536, 600, 603, 1011
FokI GGATG 4 cut(s) 200, 641, 968, 1156
Fsp4HI GCNGC 6 cut(s) 305, 393, 536, 600, 603, 1011
FspBI CTAG 2 cut(s) 629, 1344
GlaI GCGC 1 cut(s) 584
GluI GCNGC 6 cut(s) 305, 393, 536, 600, 603, 1011
GsaI CCCAGC 1 cut(s) 638
HaeIII GGCC 3 cut(s) 727, 1038, 1102
HapII CCGG 2 cut(s) 308, 434
HhaI GCGC 1 cut(s) 585
Hin1I GRCGYC 1 cut(s) 1197
Hin1II CATG 9 cut(s) 78, 441, 478, 595, 747, 944, 1021, 1271, 1301
Hin6I GCGC 1 cut(s) 583
HinP1I GCGC 1 cut(s) 583
HindIII AAGCTT 2 cut(s) 779, 927
HinfI GANTC 5 cut(s) 176, 495, 662, 901, 1204
HpaII CCGG 2 cut(s) 308, 434
HphI GGTGA 2 cut(s) 217, 1120
Hpy166II GTNNAC 2 cut(s) 509, 950
Hpy188I TCNGA 5 cut(s) 288, 424, 682, 891, 1165
Hpy188III TCNNGA 6 cut(s) 49, 152, 592, 1018, 1073, 1201
Hpy8I GTNNAC 2 cut(s) 509, 950
HpyAV CCTTC 4 cut(s) 55, 429, 687, 1135
HpyCH4III ACNGT 3 cut(s) 27, 273, 793
HpyCH4IV ACGT 1 cut(s) 1197
HpyF10VI GCNNNNNNNGC 3 cut(s) 392, 401, 580
HpyF3I CTNAG 3 cut(s) 35, 92, 1174
HpySE526I ACGT 1 cut(s) 1197
Hsp92I GRCGYC 1 cut(s) 1197
Hsp92II CATG 9 cut(s) 78, 441, 478, 595, 747, 944, 1021, 1271, 1301
HspAI GCGC 1 cut(s) 583
KpnI GGTACC 1 cut(s) 1267
Kzo9I GATC 5 cut(s) 154, 213, 370, 795, 994
LguI GCTCTTC 2 cut(s) 105, 448
LmnI GCTCC 3 cut(s) 383, 790, 1428
Lsp1109I GCAGC 6 cut(s) 291, 379, 547, 589, 611, 997
LweI GCATC 5 cut(s) 347, 838, 997, 1089, 1210
MaeI CTAG 2 cut(s) 629, 1344
MaeII ACGT 1 cut(s) 1197
MaeIII GTNAC 2 cut(s) 622, 1183
MalI GATC 5 cut(s) 156, 215, 372, 797, 996
MboI GATC 5 cut(s) 154, 213, 370, 795, 994
MboII GAAGA 9 cut(s) 29, 92, 435, 832, 971, 1037, 1075, 1162, 1318
MflI RGATCY 3 cut(s) 154, 370, 994
MhlI GDGCHC 1 cut(s) 100
MmeI TCCRAC 1 cut(s) 1411
MroXI GAANNNNTTC 1 cut(s) 1364
MseI TTAA 6 cut(s) 449, 614, 686, 806, 1146, 1437
MslI CAYNNNNRTG 1 cut(s) 436
MspA1I CMGCKG 1 cut(s) 602
MspI CCGG 2 cut(s) 308, 434
Mva1269I GAATGC 1 cut(s) 406
MvnI CGCG 1 cut(s) 585
MwoI GCNNNNNNNGC 3 cut(s) 392, 401, 580
NcoI CCATGG 1 cut(s) 1267
NdeII GATC 5 cut(s) 154, 213, 370, 795, 994
NlaIII CATG 9 cut(s) 78, 441, 478, 595, 747, 944, 1021, 1271, 1301
NlaIV GGNNCC 7 cut(s) 252, 312, 372, 480, 726, 1246, 1265
NmeAIII GCCGAG 1 cut(s) 297
NmuCI GTSAC 1 cut(s) 1183
NspI RCATGY 2 cut(s) 441, 747
PaeI GCATGC 1 cut(s) 441
PagI TCATGA 2 cut(s) 591, 1017
PciSI GCTCTTC 2 cut(s) 105, 448
PctI GAATGC 1 cut(s) 406
PdmI GAANNNNTTC 1 cut(s) 1364
PfeI GAWTC 5 cut(s) 176, 495, 662, 901, 1204
PkrI GCNGC 6 cut(s) 306, 394, 537, 601, 604, 1012
PspFI CCCAGC 1 cut(s) 634
PspN4I GGNNCC 7 cut(s) 252, 312, 372, 480, 726, 1246, 1265
PspPI GGNCC 4 cut(s) 478, 509, 725, 1037
PstI CTGCAG 3 cut(s) 397, 537, 601
PsuI RGATCY 3 cut(s) 154, 370, 994
PvuII CAGCTG 1 cut(s) 602
RsaI GTAC 2 cut(s) 939, 1265
RsaNI GTAC 2 cut(s) 938, 1264
RseI CAYNNNNRTG 1 cut(s) 436
SapI GCTCTTC 2 cut(s) 105, 448
SaqAI TTAA 6 cut(s) 449, 614, 686, 806, 1146, 1437
SatI GCNGC 6 cut(s) 305, 393, 536, 600, 603, 1011
Sau3AI GATC 5 cut(s) 154, 213, 370, 795, 994
Sau96I GGNCC 4 cut(s) 478, 509, 725, 1037
SduI GDGCHC 1 cut(s) 100
SfaNI GCATC 5 cut(s) 347, 838, 997, 1089, 1210
SfcI CTRYAG 3 cut(s) 393, 533, 597
SinI GGWCC 2 cut(s) 478, 509
SmiMI CAYNNNNRTG 1 cut(s) 436
SmlI CTYRAG 1 cut(s) 1337
SmoI CTYRAG 1 cut(s) 1337
SphI GCATGC 1 cut(s) 441
SsiI CCGC 1 cut(s) 572
SspMI CTAG 2 cut(s) 629, 1344
StyI CCWWGG 2 cut(s) 1267, 1355
TaaI ACNGT 3 cut(s) 27, 273, 793
TaiI ACGT 1 cut(s) 1200
TaqI TCGA 4 cut(s) 212, 501, 798, 1083
TatI WGTACW 1 cut(s) 937
TfiI GAWTC 5 cut(s) 176, 495, 662, 901, 1204
Tru1I TTAA 6 cut(s) 449, 614, 686, 806, 1146, 1437
Tru9I TTAA 6 cut(s) 449, 614, 686, 806, 1146, 1437
TscAI CASTG 6 cut(s) 30, 100, 411, 739, 957, 1255
TseFI GTSAC 1 cut(s) 1183
TseI GCWGC 6 cut(s) 304, 392, 535, 599, 602, 1010
Tsp45I GTSAC 1 cut(s) 1183
TspDTI ATGAA 8 cut(s) 833, 961, 972, 1034, 1038, 1078, 1110, 1152
TspRI CASTG 6 cut(s) 30, 100, 411, 739, 957, 1255
VpaK11BI GGWCC 2 cut(s) 478, 509
XagI CCTNNNNNAGG 1 cut(s) 378
XapI RAATTY 3 cut(s) 516, 1085, 1155
XceI RCATGY 2 cut(s) 441, 747
XmnI GAANNNNTTC 1 cut(s) 1364
XspI CTAG 2 cut(s) 629, 1344
ZraI GACGTC 1 cut(s) 1198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.