Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012226

Physical Location & Seq

Genomic Coordinates Reverse (-)

18847519 .. 18849430

Gene Structure 1912 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G50720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGGCCATTTCTCCGACGATGATGCTTAATGCGAACTACCCTTTTTTCATGTCAGCGTTTGGCTCAGATGACAATAATGATGAGTCTGATAACCAGTTCGATTTCAATATCAGCAGAGAGTTGCTTCTCAACCCTAAAGACATCATGAGGGGAGAGATGATTGGAGAAGGAGGCAACTCCATCGTTTACAAAGGCCGACTCAAAAACATTGTTCCTGTGGCGGTGAAGATAGTGCAGCCGGGTAAAACATCTGCTGTAAGCATTCAGGACAAACAACAGTTTCAAAAGGAGGTTCTGGTACTATCCTCGATGAAACATGAAAACATTGTCAGGTTTGTTGGAGCTTGCATAGAGCCACAATTGATGATAGTTACCGAACTCGTAAGAGGTGGTACTCTTCAGAGGTTCATGTTGAACTCTCGCCCGAGTCCTCTTGATCTCAAGGTGTCACTAAGCTTTGCTTTGGACATTTCTCGAGCCATGGAGTATTTGCACTCAAAAGGCATCATTCACCGTGACCTAAATCCAAGGAATGTTTTGGTAACTGGTGATATGAAACATGTGAAGTTGGCTGATTTTGGACTTGCAAGAGAAAAGACTCTTGGTGGCATGACTTGTGAGGCGGGCACGTACCGTTGGATGGCTCCAGAGGTATGCAGCCGTGAGCCACTCCGAATTGGGGAGAAAAAACACTACGACCAGAAAATCGATGTGTATAGCTTCGCACTGATTTTCTGGTCCTTGCTCACAAACAAAACACCTTTCAGTGAGATACCTAGCATTTCTATTCCCTATTTTGTGAACCAGGGCAAGAGACCAAGCCTATCGAATATTCCTGATGAGGTCGTCCCCATATTAGAATGTTGTTGGGCAGCGGACTCAAAGACTCGTCTCGAATTCAAAGATATTACAATCTCACTGGAAAGCTTGCTAAAAAGATTCTGCTCAGAGAGAAGTAATAATGAGATAACGATCACCGAAGATGAAGCTTATGATGATGAGATAGAGGAATTGGAGACCACTTGGCTGCTTCCAAAGCGCTATATCAAGCTGAAGAAACCTAAGAAGATCAAGCAGAACGTGATGAAGAAGATACTTCCTTTCTTCAAGAAGTTCATTTCTTCAAAGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04013 ko04064 ko04140 ko04152 ko04214 ko04310 ko04380 ko04520 ko04620 ko04621 ko04622 ko04624 ko04657 ko04660 ko04668 ko05140 ko05145 ko05162 ko05168 ko05169 ko05418 map04010 map04013 map04064 map04140 map04152 map04214 map04310 map04380 map04520 map04620 map04621 map04622 map04624 map04657 map04660 map04668 map05140 map05145 map05162 map05168 map05169 map05418

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

377

Amino Acids

43.1

Weight (kDa)

8.7

Isoelectric Point (pI)

45.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	50 - 305	5.3e-54	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	51 - 303	1.8e-47	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012226)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50720 AT3G50730 AT5G66710
fragaria_vesca	FvH4_1g13890
malus_domestica	MD15G1266800.v1.1
prunus_persica	Prupe.7G150600_v2.0.a1
pyrus_communis	pycom02g11980 pycom12g17500 pycom17g26870
rosa_chinensis	RchiOBHm_Chr2g0102201
rosa_laevigata	RLG00000017138
rosa_multiflora	Rmu_sc0010937.1_g000009
rosa_roxburghii	Rroxscaffold_2G00140690
rosa_rugosa	Rorug02G0105400
rosa_samantha	Rh2AG153500 Rh2BG159400 Rh2CG158900 Rh2DG159100
rosa_wichuraiana	Rw2G011990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	221, 623, 875
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	896
AcuI	CTGAAG	2 cut(s)	383, 1073
AfaI	GTAC	3 cut(s)	300, 394, 632
AfeI	AGCGCT	1 cut(s)	1040
AfiI	CCNNNNNNNGG	2 cut(s)	640, 679
AflIII	ACRYGT	1 cut(s)	559
AgsI	TTSAA	6 cut(s)	106, 284, 415, 901, 1108, 1125
AjnI	CCWGG	1 cut(s)	804
AjuI	GAANNNNNNNTTGG	2 cut(s)	585, 617
AluBI	AGCT	6 cut(s)	344, 456, 720, 927, 989, 1051
AluI	AGCT	6 cut(s)	344, 456, 720, 927, 989, 1051
Alw26I	GTCTC	3 cut(s)	808, 896, 1010
Ama87I	CYCGRG	2 cut(s)	424, 474
Aor51HI	AGCGCT	1 cut(s)	1040
AoxI	GGCC	2 cut(s)	3, 193
ApeKI	GCWGC	4 cut(s)	235, 657, 872, 1027
ApoI	RAATTY	1 cut(s)	896
AspLEI	GCGC	1 cut(s)	1041
AspS9I	GGNCC	1 cut(s)	738
AsuC2I	CCSGG	1 cut(s)	240
AsuHPI	GGTGA	4 cut(s)	235, 503, 560, 967
AvaI	CYCGRG	2 cut(s)	424, 474
AvaII	GGWCC	1 cut(s)	738
BaeGI	GKGCMC	1 cut(s)	629
BalI	TGGCCA	1 cut(s)	5
BbvI	GCAGC	4 cut(s)	247, 669, 884, 1014
BccI	CCATC	2 cut(s)	188, 634
BceAI	ACGGC	1 cut(s)	645
BcgI	CGANNNNNNTGC	4 cut(s)	4, 38, 163, 197
BciT130I	CCWGG	1 cut(s)	806
BcnI	CCSGG	1 cut(s)	240
BcoDI	GTCTC	3 cut(s)	808, 896, 1010
BfaI	CTAG	1 cut(s)	777
BfoI	RGCGCY	1 cut(s)	1042
BisI	GCNGC	4 cut(s)	236, 658, 873, 1028
BlsI	GCNGC	4 cut(s)	237, 659, 874, 1029
Bme1390I	CCNGG	2 cut(s)	240, 806
Bme18I	GGWCC	1 cut(s)	738
BmeT110I	CYCGRG	2 cut(s)	424, 474
BmgT120I	GGNCC	1 cut(s)	738
BmiI	GGNNCC	1 cut(s)	645
BmrFI	CCNGG	2 cut(s)	240, 806
BmsI	GCATC	2 cut(s)	12, 513
BpmI	CTGGAG	1 cut(s)	630
BpuEI	CTTGAG	1 cut(s)	425
BpuMI	CCSGG	1 cut(s)	240
Bsa29I	ATCGAT	1 cut(s)	708
BsaAI	YACGTR	1 cut(s)	630
BsaBI	GATNNNNATC	1 cut(s)	971
BsaI	GGTCTC	2 cut(s)	808, 1010
BsaJI	CCNNGG	3 cut(s)	480, 527, 805
Bsc4I	CCNNNNNNNGG	2 cut(s)	640, 679
Bse1I	ACTGG	3 cut(s)	94, 550, 924
Bse8I	GATNNNNATC	1 cut(s)	971
BseBI	CCWGG	1 cut(s)	806
BseCI	ATCGAT	1 cut(s)	708
BseDI	CCNNGG	3 cut(s)	480, 527, 805
BseGI	GGATG	1 cut(s)	645
BseJI	GATNNNNATC	1 cut(s)	971
BseLI	CCNNNNNNNGG	2 cut(s)	640, 679
BseMII	CTCAG	2 cut(s)	78, 960
BseNI	ACTGG	3 cut(s)	94, 550, 924
BseSI	GKGCMC	1 cut(s)	629
BseXI	GCAGC	4 cut(s)	247, 669, 884, 1014
BsgI	GTGCAG	1 cut(s)	254
BshFI	GGCC	2 cut(s)	5, 195
BshVI	ATCGAT	1 cut(s)	708
BsiHKCI	CYCGRG	2 cut(s)	424, 474
BsiSI	CCGG	1 cut(s)	239
BslFI	GGGAC	1 cut(s)	833
BslI	CCNNNNNNNGG	2 cut(s)	640, 679
BsmAI	GTCTC	3 cut(s)	808, 896, 1010
BsmBI	CGTCTC	1 cut(s)	896
BsmFI	GGGAC	1 cut(s)	833
BsmI	GAATGC	1 cut(s)	261
BsnI	GGCC	2 cut(s)	5, 195
Bso31I	GGTCTC	2 cut(s)	808, 1010
BsoBI	CYCGRG	2 cut(s)	424, 474
Bsp1286I	GDGCHC	1 cut(s)	629
Bsp143I	GATC	3 cut(s)	436, 972, 1068
Bsp19I	CCATGG	1 cut(s)	480
BspACI	CCGC	3 cut(s)	221, 623, 875
BspANI	GGCC	2 cut(s)	5, 195
BspCNI	CTCAG	2 cut(s)	77, 959
BspDI	ATCGAT	1 cut(s)	708
BspHI	TCATGA	1 cut(s)	144
BspLI	GGNNCC	1 cut(s)	645
BspTNI	GGTCTC	2 cut(s)	808, 1010
BsrI	ACTGG	3 cut(s)	94, 550, 924
BssECI	CCNNGG	3 cut(s)	480, 527, 805
BssMI	GATC	3 cut(s)	436, 972, 1068
BssT1I	CCWWGG	2 cut(s)	480, 527
Bst2UI	CCWGG	1 cut(s)	806
Bst4CI	ACNGT	3 cut(s)	279, 515, 635
Bst6I	CTCTTC	1 cut(s)	402
BstBAI	YACGTR	1 cut(s)	630
BstC8I	GCNNGC	3 cut(s)	346, 625, 929
BstDEI	CTNAG	4 cut(s)	64, 452, 946, 1062
BstDSI	CCRYGG	1 cut(s)	480
BstF5I	GGATG	1 cut(s)	645
BstH2I	RGCGCY	1 cut(s)	1042
BstHHI	GCGC	1 cut(s)	1041
BstKTI	GATC	3 cut(s)	439, 975, 1071
BstMAI	GTCTC	3 cut(s)	808, 896, 1010
BstMBI	GATC	3 cut(s)	436, 972, 1068
BstMWI	GCNNNNNNNGC	1 cut(s)	1036
BstNI	CCWGG	1 cut(s)	806
BstNSI	RCATGY	1 cut(s)	563
BstSCI	CCNGG	2 cut(s)	238, 804
BstSLI	GKGCMC	1 cut(s)	629
BstV1I	GCAGC	4 cut(s)	247, 669, 884, 1014
Bsu15I	ATCGAT	1 cut(s)	708
BsuRI	GGCC	2 cut(s)	5, 195
BsuTUI	ATCGAT	1 cut(s)	708
BtgI	CCRYGG	1 cut(s)	480
BtsCI	GGATG	1 cut(s)	645
BtsIMutI	CAGTG	3 cut(s)	725, 772, 917
Cac8I	GCNNGC	3 cut(s)	346, 625, 929
CciI	TCATGA	1 cut(s)	144
CfoI	GCGC	1 cut(s)	1041
Cfr13I	GGNCC	1 cut(s)	738
ClaI	ATCGAT	1 cut(s)	708
Csp6I	GTAC	3 cut(s)	299, 393, 631
CviAII	CATG	7 cut(s)	49, 145, 317, 409, 481, 560, 610
CviQI	GTAC	3 cut(s)	299, 393, 631
DdeI	CTNAG	4 cut(s)	64, 452, 946, 1062
DpnI	GATC	3 cut(s)	438, 974, 1070
DpnII	GATC	3 cut(s)	436, 972, 1068
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	402
EarI	CTCTTC	1 cut(s)	402
Eco130I	CCWWGG	2 cut(s)	480, 527
Eco31I	GGTCTC	2 cut(s)	808, 1010
Eco47I	GGWCC	1 cut(s)	738
Eco47III	AGCGCT	1 cut(s)	1040
Eco57I	CTGAAG	2 cut(s)	383, 1073
Eco88I	CYCGRG	2 cut(s)	424, 474
EcoRI	GAATTC	1 cut(s)	896
EcoRII	CCWGG	1 cut(s)	804
EcoT14I	CCWWGG	2 cut(s)	480, 527
ErhI	CCWWGG	2 cut(s)	480, 527
Esp3I	CGTCTC	1 cut(s)	896
FaeI	CATG	7 cut(s)	52, 148, 320, 412, 484, 563, 613
FalI	AAGNNNNNCTT	2 cut(s)	445, 477
FaqI	GGGAC	1 cut(s)	833
FatI	CATG	7 cut(s)	48, 144, 316, 408, 480, 559, 609
FauI	CCCGC	1 cut(s)	616
Fnu4HI	GCNGC	4 cut(s)	236, 658, 873, 1028
FokI	GGATG	1 cut(s)	652
Fsp4HI	GCNGC	4 cut(s)	236, 658, 873, 1028
FspBI	CTAG	1 cut(s)	777
GlaI	GCGC	1 cut(s)	1040
GluI	GCNGC	4 cut(s)	236, 658, 873, 1028
GsuI	CTGGAG	1 cut(s)	630
HaeII	RGCGCY	1 cut(s)	1042
HaeIII	GGCC	2 cut(s)	5, 195
HapII	CCGG	1 cut(s)	239
HhaI	GCGC	1 cut(s)	1041
Hin1II	CATG	7 cut(s)	52, 148, 320, 412, 484, 563, 613
Hin6I	GCGC	1 cut(s)	1039
HinP1I	GCGC	1 cut(s)	1039
HindIII	AAGCTT	3 cut(s)	454, 925, 987
HinfI	GANTC	7 cut(s)	83, 198, 427, 598, 878, 886, 939
HpaII	CCGG	1 cut(s)	239
HphI	GGTGA	4 cut(s)	235, 503, 560, 967
Hpy166II	GTNNAC	2 cut(s)	187, 802
Hpy188I	TCNGA	6 cut(s)	15, 67, 88, 402, 674, 949
Hpy188III	TCNNGA	8 cut(s)	145, 266, 434, 474, 647, 836, 893, 1108
Hpy8I	GTNNAC	2 cut(s)	187, 802
Hpy99I	CGWCG	1 cut(s)	19
HpyAV	CCTTC	1 cut(s)	161
HpyCH4III	ACNGT	3 cut(s)	279, 515, 635
HpyCH4IV	ACGT	2 cut(s)	629, 1080
HpyCH4V	TGCA	5 cut(s)	235, 348, 493, 587, 657
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1036
HpyF3I	CTNAG	4 cut(s)	64, 452, 946, 1062
HpySE526I	ACGT	2 cut(s)	629, 1080
Hsp92II	CATG	7 cut(s)	52, 148, 320, 412, 484, 563, 613
HspAI	GCGC	1 cut(s)	1039
Kzo9I	GATC	3 cut(s)	436, 972, 1068
LmnI	GCTCC	2 cut(s)	341, 649
Lsp1109I	GCAGC	4 cut(s)	247, 669, 884, 1014
LweI	GCATC	2 cut(s)	12, 513
MaeI	CTAG	1 cut(s)	777
MaeII	ACGT	2 cut(s)	629, 1080
MaeIII	GTNAC	4 cut(s)	370, 447, 515, 541
MalI	GATC	3 cut(s)	438, 974, 1070
MboI	GATC	3 cut(s)	436, 972, 1068
MboII	GAAGA	9 cut(s)	238, 389, 992, 1066, 1078, 1096, 1099, 1102, 1113
MfeI	CAATTG	1 cut(s)	359
MhlI	GDGCHC	1 cut(s)	629
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	359, 675, 896, 1010
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	6 cut(s)	92, 192, 436, 592, 872, 880
MmeI	TCCRAC	3 cut(s)	38, 319, 617
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	27
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	875
MspI	CCGG	1 cut(s)	239
MspR9I	CCNGG	2 cut(s)	240, 806
MunI	CAATTG	1 cut(s)	359
Mva1269I	GAATGC	1 cut(s)	261
MvaI	CCWGG	1 cut(s)	806
MwoI	GCNNNNNNNGC	1 cut(s)	1036
NciI	CCSGG	1 cut(s)	240
NcoI	CCATGG	1 cut(s)	480
NdeII	GATC	3 cut(s)	436, 972, 1068
NlaIII	CATG	7 cut(s)	52, 148, 320, 412, 484, 563, 613
NlaIV	GGNNCC	1 cut(s)	645
NmuCI	GTSAC	2 cut(s)	447, 515
NspI	RCATGY	1 cut(s)	563
PaeR7I	CTCGAG	1 cut(s)	474
PagI	TCATGA	1 cut(s)	144
PciI	ACATGT	1 cut(s)	559
PctI	GAATGC	1 cut(s)	261
PfeI	GAWTC	1 cut(s)	939
PkrI	GCNGC	4 cut(s)	237, 659, 874, 1029
PleI	GAGTC	6 cut(s)	91, 192, 435, 592, 872, 880
PpsI	GAGTC	6 cut(s)	91, 192, 435, 592, 872, 880
Ppu21I	YACGTR	1 cut(s)	630
PscI	ACATGT	1 cut(s)	559
Psp6I	CCWGG	1 cut(s)	804
PspGI	CCWGG	1 cut(s)	804
PspN4I	GGNNCC	1 cut(s)	645
PspPI	GGNCC	1 cut(s)	738
RsaI	GTAC	3 cut(s)	300, 394, 632
RsaNI	GTAC	3 cut(s)	299, 393, 631
SaqAI	TTAA	1 cut(s)	27
SatI	GCNGC	4 cut(s)	236, 658, 873, 1028
Sau3AI	GATC	3 cut(s)	436, 972, 1068
Sau96I	GGNCC	1 cut(s)	738
SchI	GAGTC	6 cut(s)	92, 192, 436, 592, 872, 880
ScrFI	CCNGG	2 cut(s)	240, 806
SduI	GDGCHC	1 cut(s)	629
SfaNI	GCATC	2 cut(s)	12, 513
Sfr274I	CTCGAG	1 cut(s)	474
SinI	GGWCC	1 cut(s)	738
SlaI	CTCGAG	1 cut(s)	474
SmlI	CTYRAG	2 cut(s)	440, 474
SmoI	CTYRAG	2 cut(s)	440, 474
Sse9I	AATT	4 cut(s)	359, 675, 896, 1010
SsiI	CCGC	3 cut(s)	221, 623, 875
SspI	AATATT	1 cut(s)	832
SspMI	CTAG	1 cut(s)	777
StyD4I	CCNGG	2 cut(s)	238, 804
StyI	CCWWGG	2 cut(s)	480, 527
TaaI	ACNGT	3 cut(s)	279, 515, 635
TaiI	ACGT	2 cut(s)	632, 1083
TaqI	TCGA	6 cut(s)	99, 308, 475, 708, 827, 894
TasI	AATT	4 cut(s)	359, 675, 896, 1010
TfiI	GAWTC	1 cut(s)	939
Tru1I	TTAA	1 cut(s)	27
Tru9I	TTAA	1 cut(s)	27
TscAI	CASTG	3 cut(s)	732, 772, 924
TseFI	GTSAC	2 cut(s)	447, 515
TseI	GCWGC	4 cut(s)	235, 657, 872, 1027
Tsp45I	GTSAC	2 cut(s)	447, 515
TspDTI	ATGAA	8 cut(s)	37, 326, 333, 397, 569, 999, 1100, 1105
TspRI	CASTG	3 cut(s)	732, 772, 924
VpaK11BI	GGWCC	1 cut(s)	738
XapI	RAATTY	1 cut(s)	896
XceI	RCATGY	1 cut(s)	563
XhoI	CTCGAG	1 cut(s)	474
XspI	CTAG	1 cut(s)	777

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.