Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0012226

Physical Location & Seq

Genomic Coordinates Reverse (-)

12188935 .. 12193385

Gene Structure 4451 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G011990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGGCGGGACATGGCGTGTTCACTGTCACCGATAACGAACTCTTCGACTACTACCCGGTCTGCTATCTCAAGAACAACGCCAGCAACGATGATGAGAATTGTGTTGCAGCTAAAGGCAAAGGCAACAACTTTGTGTTCAATTTGGACCCAAGTTTGCTTATTGACCCAAGCTGCGTTGTGGTTGGTGAAATGCTCGGAGAAGGGCCGCAGGCGATTGTCTATGAAGGATTGTACAATTCCAAACCTGTTGCTGTGAAAATCATACAGCCAGATGAAACAGGTGTTATCAGTCCTGAACGCAAGGAAAAATTTCAGAGGGAGGTGACGTTGCTGTCAAAGGCAAGACATGAAAACATTGTGAAGTTTATCGGTGCGTCTGTGAAACCAACTATGATGATAGTTACTGAGCTTATGAGAGGTGGCACAATTCAGAAGTACTTGTGGAACACCCGCCCCGTAATTCCTGACTTGAAGCTTTCAATAAGTTTTGCATTGGATATATGTCGAGCTATGGAGTACTTGCATGCAAATGGCATCATACACCGTGACTTGAAGCCAAGCAATCTACTTCTTACAGAAAACATGAAACAAGTGAAGCTGGCTGACTTTGGGCTTGCTAGAGAGCAGATAGAAGGTGCAATGACTAGTGAGGCTGGAACATATCGGTGGATGGCTCCTGAGTTGTTCAGCACAGAACCAGTTCCAAGAGGTGCAAAGATAGATTATGATCACAAGGCAGATGTCTACAGTTTCTCAATAGTTCTGTGGGAGTTGCTCACGAACAAAACTCCATACAAGGGAAGGAATAACGTAATGGTGGCATATGCTACAGCTAACAATGTACGGCCTAACCTGGAGGACATTCCTGAGGGTATTATTCCTCTACTGGAGTCCTGCTGGGCAGAAGACCCCAAGGACCGACCAGAATTTATGGAAGTCACTGATTATCTCTCTAACTTCTACCAGGAACATTGCTTACAGGAGACCAAACCTCCTCCTAAGGTCATTGAGACTGAAGATAATGAAAGGAACATTAAAGAAGAAGATTCGCCAAGCACCACCCAGCAACATGTGATTGAGACACCTGAAGAAGAGAAAAGGGTTAAAAGGCGCAAGAAGAGTTGGAAGAGTTGGTCATCGGGGTGGTTCTGTTTCTCTTGTTTGGCTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04013 ko04064 ko04140 ko04152 ko04214 ko04310 ko04380 ko04520 ko04620 ko04621 ko04622 ko04624 ko04657 ko04660 ko04668 ko05140 ko05145 ko05162 ko05168 ko05169 ko05418 map04010 map04013 map04064 map04140 map04152 map04214 map04310 map04380 map04520 map04620 map04621 map04622 map04624 map04657 map04660 map04668 map05140 map05145 map05162 map05168 map05169 map05418

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

390

Amino Acids

44.35

Weight (kDa)

5.38

Isoelectric Point (pI)

43.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	61 - 316	7.7e-56	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	61 - 314	8.7e-51	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012226)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50720 AT3G50730 AT5G66710
fragaria_vesca	FvH4_1g13890
malus_domestica	MD15G1266800.v1.1
prunus_persica	Prupe.7G150600_v2.0.a1
pyrus_communis	pycom02g11980 pycom12g17500 pycom17g26870
rosa_chinensis	RchiOBHm_Chr2g0102201
rosa_laevigata	RLG00000017138
rosa_multiflora	Rmu_sc0010937.1_g000009
rosa_roxburghii	Rroxscaffold_2G00140690
rosa_rugosa	Rorug02G0105400
rosa_samantha	Rh2AG153500 Rh2BG159400 Rh2CG158900 Rh2DG159100
rosa_wichuraiana	Rw2G011990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	331
AccI	GTMKAC	1 cut(s)	744
AciI	CCGC	3 cut(s)	5, 206, 451
AcsI	RAATTY	2 cut(s)	308, 926
AcuI	CTGAAG	2 cut(s)	1035, 1107
AfaI	GTAC	4 cut(s)	233, 437, 518, 843
AfiI	CCNNNNNNNGG	1 cut(s)	797
AflIII	ACRYGT	1 cut(s)	1069
AgsI	TTSAA	4 cut(s)	139, 472, 480, 553
AhlI	ACTAGT	1 cut(s)	644
AjnI	CCWGG	2 cut(s)	852, 963
AluBI	AGCT	7 cut(s)	110, 171, 409, 475, 509, 598, 833
AluI	AGCT	7 cut(s)	110, 171, 409, 475, 509, 598, 833
Alw26I	GTCTC	3 cut(s)	977, 1004, 1073
AoxI	GGCC	2 cut(s)	203, 845
ApeKI	GCWGC	2 cut(s)	107, 171
ApoI	RAATTY	2 cut(s)	308, 926
Asp700I	GAANNNNTTC	2 cut(s)	309, 699
AspLEI	GCGC	1 cut(s)	1113
AspS9I	GGNCC	3 cut(s)	145, 203, 916
AsuC2I	CCSGG	1 cut(s)	56
AsuHPI	GGTGA	3 cut(s)	19, 197, 334
AvaII	GGWCC	2 cut(s)	145, 916
AxyI	CCTNAGG	2 cut(s)	867, 999
BbsI	GAAGAC	1 cut(s)	912
BbvI	GCAGC	2 cut(s)	119, 158
BccI	CCATC	1 cut(s)	664
BceAI	ACGGC	1 cut(s)	860
BciT130I	CCWGG	2 cut(s)	854, 965
BclI	TGATCA	1 cut(s)	727
BcnI	CCSGG	1 cut(s)	56
BcoDI	GTCTC	3 cut(s)	977, 1004, 1073
BcuI	ACTAGT	1 cut(s)	644
BfaI	CTAG	2 cut(s)	618, 645
BfmI	CTRYAG	2 cut(s)	745, 828
BisI	GCNGC	3 cut(s)	108, 172, 206
BlsI	GCNGC	3 cut(s)	109, 173, 207
BmcAI	AGTACT	2 cut(s)	437, 518
Bme1390I	CCNGG	3 cut(s)	56, 854, 965
Bme18I	GGWCC	2 cut(s)	145, 916
BmgT120I	GGNCC	3 cut(s)	145, 203, 916
BmiI	GGNNCC	2 cut(s)	147, 675
BmrFI	CCNGG	3 cut(s)	56, 854, 965
BmsI	GCATC	1 cut(s)	543
BpiI	GAAGAC	1 cut(s)	912
BpmI	CTGGAG	2 cut(s)	875, 908
BpuEI	CTTGAG	1 cut(s)	53
BpuMI	CCSGG	1 cut(s)	56
BsaBI	GATNNNNATC	1 cut(s)	726
BsaI	GGTCTC	1 cut(s)	977
BsaJI	CCNNGG	1 cut(s)	912
BsaXI	ACNNNNNCTCC	4 cut(s)	311, 341, 976, 1006
Bsc4I	CCNNNNNNNGG	1 cut(s)	797
Bse1I	ACTGG	2 cut(s)	698, 891
Bse21I	CCTNAGG	2 cut(s)	867, 999
Bse3DI	GCAATG	2 cut(s)	645, 970
Bse8I	GATNNNNATC	1 cut(s)	726
BseBI	CCWGG	2 cut(s)	854, 965
BseDI	CCNNGG	1 cut(s)	912
BseGI	GGATG	1 cut(s)	675
BseJI	GATNNNNATC	1 cut(s)	726
BseLI	CCNNNNNNNGG	1 cut(s)	797
BseMI	GCAATG	2 cut(s)	645, 970
BseMII	CTCAG	3 cut(s)	396, 669, 858
BseNI	ACTGG	2 cut(s)	698, 891
BseRI	GAGGAG	1 cut(s)	984
BseXI	GCAGC	2 cut(s)	119, 158
BseYI	CCCAGC	2 cut(s)	897, 1062
BshFI	GGCC	2 cut(s)	205, 847
BsiSI	CCGG	1 cut(s)	56
BslFI	GGGAC	1 cut(s)	21
BslI	CCNNNNNNNGG	1 cut(s)	797
BsmAI	GTCTC	3 cut(s)	977, 1004, 1073
BsmFI	GGGAC	1 cut(s)	21
BsnI	GGCC	2 cut(s)	205, 847
Bso31I	GGTCTC	1 cut(s)	977
Bsp1407I	TGTACA	1 cut(s)	231
Bsp143I	GATC	1 cut(s)	727
BspACI	CCGC	3 cut(s)	5, 206, 451
BspANI	GGCC	2 cut(s)	205, 847
BspCNI	CTCAG	3 cut(s)	397, 670, 859
BspLI	GGNNCC	2 cut(s)	147, 675
BspTNI	GGTCTC	1 cut(s)	977
BsrDI	GCAATG	2 cut(s)	645, 970
BsrGI	TGTACA	1 cut(s)	231
BsrI	ACTGG	2 cut(s)	698, 891
BssECI	CCNNGG	1 cut(s)	912
BssMI	GATC	1 cut(s)	727
BssT1I	CCWWGG	1 cut(s)	912
Bst2UI	CCWGG	2 cut(s)	854, 965
Bst4CI	ACNGT	3 cut(s)	25, 545, 749
Bst6I	CTCTTC	4 cut(s)	47, 1086, 1112, 1121
BstAUI	TGTACA	1 cut(s)	231
BstC8I	GCNNGC	5 cut(s)	82, 210, 525, 600, 615
BstDEI	CTNAG	4 cut(s)	405, 678, 867, 999
BstF5I	GGATG	1 cut(s)	675
BstHHI	GCGC	1 cut(s)	1113
BstKTI	GATC	1 cut(s)	730
BstMAI	GTCTC	3 cut(s)	977, 1004, 1073
BstMBI	GATC	1 cut(s)	727
BstNI	CCWGG	2 cut(s)	854, 965
BstNSI	RCATGY	2 cut(s)	527, 1073
BstSCI	CCNGG	3 cut(s)	54, 852, 963
BstSFI	CTRYAG	2 cut(s)	745, 828
BstV1I	GCAGC	2 cut(s)	119, 158
BstV2I	GAAGAC	1 cut(s)	912
Bsu36I	CCTNAGG	2 cut(s)	867, 999
BsuRI	GGCC	2 cut(s)	205, 847
BtsCI	GGATG	1 cut(s)	675
BtsIMutI	CAGTG	2 cut(s)	21, 939
Cac8I	GCNNGC	5 cut(s)	82, 210, 525, 600, 615
CfoI	GCGC	1 cut(s)	1113
Cfr13I	GGNCC	3 cut(s)	145, 203, 916
CseI	GACGC	1 cut(s)	363
Csp6I	GTAC	4 cut(s)	232, 436, 517, 842
CviAII	CATG	5 cut(s)	11, 347, 524, 583, 1070
CviQI	GTAC	4 cut(s)	232, 436, 517, 842
DdeI	CTNAG	4 cut(s)	405, 678, 867, 999
DpnI	GATC	1 cut(s)	729
DpnII	GATC	1 cut(s)	727
DrdI	GACNNNNNNGTC	1 cut(s)	331
DseDI	GACNNNNNNGTC	1 cut(s)	331
Eam1104I	CTCTTC	4 cut(s)	47, 1086, 1112, 1121
EarI	CTCTTC	4 cut(s)	47, 1086, 1112, 1121
Eco130I	CCWWGG	1 cut(s)	912
Eco31I	GGTCTC	1 cut(s)	977
Eco47I	GGWCC	2 cut(s)	145, 916
Eco57I	CTGAAG	2 cut(s)	1035, 1107
Eco81I	CCTNAGG	2 cut(s)	867, 999
EcoRII	CCWGG	2 cut(s)	852, 963
EcoT14I	CCWWGG	1 cut(s)	912
ErhI	CCWWGG	1 cut(s)	912
FaeI	CATG	5 cut(s)	14, 350, 527, 586, 1073
FaqI	GGGAC	1 cut(s)	21
FatI	CATG	5 cut(s)	10, 346, 523, 582, 1069
FauI	CCCGC	1 cut(s)	458
FauNDI	CATATG	1 cut(s)	823
FbaI	TGATCA	1 cut(s)	727
FblI	GTMKAC	1 cut(s)	744
Fnu4HI	GCNGC	3 cut(s)	108, 172, 206
FokI	GGATG	1 cut(s)	682
Fsp4HI	GCNGC	3 cut(s)	108, 172, 206
FspBI	CTAG	2 cut(s)	618, 645
GlaI	GCGC	1 cut(s)	1112
GluI	GCNGC	3 cut(s)	108, 172, 206
GsaI	CCCAGC	2 cut(s)	901, 1066
GsuI	CTGGAG	2 cut(s)	875, 908
HaeIII	GGCC	2 cut(s)	205, 847
HapII	CCGG	1 cut(s)	56
HgaI	GACGC	1 cut(s)	363
HhaI	GCGC	1 cut(s)	1113
Hin1II	CATG	5 cut(s)	14, 350, 527, 586, 1073
Hin6I	GCGC	1 cut(s)	1111
HinP1I	GCGC	1 cut(s)	1111
HindIII	AAGCTT	1 cut(s)	473
HinfI	GANTC	2 cut(s)	890, 1046
HpaII	CCGG	1 cut(s)	56
HphI	GGTGA	3 cut(s)	19, 197, 334
Hpy166II	GTNNAC	2 cut(s)	21, 745
Hpy188I	TCNGA	3 cut(s)	197, 315, 432
Hpy188III	TCNNGA	6 cut(s)	70, 293, 464, 677, 778, 866
Hpy8I	GTNNAC	2 cut(s)	21, 745
HpyAV	CCTTC	4 cut(s)	194, 218, 626, 795
HpyCH4III	ACNGT	3 cut(s)	25, 545, 749
HpyCH4IV	ACGT	2 cut(s)	326, 810
HpyCH4V	TGCA	6 cut(s)	107, 491, 523, 527, 638, 713
HpyF3I	CTNAG	4 cut(s)	405, 678, 867, 999
HpySE526I	ACGT	2 cut(s)	326, 810
Hsp92II	CATG	5 cut(s)	14, 350, 527, 586, 1073
HspAI	GCGC	1 cut(s)	1111
Ksp22I	TGATCA	1 cut(s)	727
Kzo9I	GATC	1 cut(s)	727
LmnI	GCTCC	1 cut(s)	679
Lsp1109I	GCAGC	2 cut(s)	119, 158
LweI	GCATC	1 cut(s)	543
MaeI	CTAG	2 cut(s)	618, 645
MaeII	ACGT	2 cut(s)	326, 810
MaeIII	GTNAC	5 cut(s)	25, 322, 400, 545, 937
MalI	GATC	1 cut(s)	729
MboI	GATC	1 cut(s)	727
MboII	GAAGA	9 cut(s)	34, 917, 1028, 1052, 1055, 1100, 1103, 1129, 1138
MluCI	AATT	7 cut(s)	97, 139, 235, 308, 426, 459, 926
MlyI	GAGTC	1 cut(s)	899
MmeI	TCCRAC	1 cut(s)	1103
MroXI	GAANNNNTTC	2 cut(s)	309, 699
MseI	TTAA	2 cut(s)	1035, 1104
MslI	CAYNNNNRTG	3 cut(s)	528, 664, 1141
MspI	CCGG	1 cut(s)	56
MspR9I	CCNGG	3 cut(s)	56, 854, 965
MvaI	CCWGG	2 cut(s)	854, 965
NciI	CCSGG	1 cut(s)	56
NdeI	CATATG	1 cut(s)	823
NdeII	GATC	1 cut(s)	727
NlaIII	CATG	5 cut(s)	14, 350, 527, 586, 1073
NlaIV	GGNNCC	2 cut(s)	147, 675
NmuCI	GTSAC	4 cut(s)	25, 322, 545, 937
NspI	RCATGY	2 cut(s)	527, 1073
PaeI	GCATGC	1 cut(s)	527
PciI	ACATGT	1 cut(s)	1069
PcsI	WCGNNNNNNNCGW	2 cut(s)	42, 84
PdmI	GAANNNNTTC	2 cut(s)	309, 699
PfeI	GAWTC	1 cut(s)	1046
PkrI	GCNGC	3 cut(s)	109, 173, 207
PleI	GAGTC	1 cut(s)	898
PpsI	GAGTC	1 cut(s)	898
PscI	ACATGT	1 cut(s)	1069
Psp6I	CCWGG	2 cut(s)	852, 963
PspFI	CCCAGC	2 cut(s)	897, 1062
PspGI	CCWGG	2 cut(s)	852, 963
PspN4I	GGNNCC	2 cut(s)	147, 675
PspPI	GGNCC	3 cut(s)	145, 203, 916
PsrI	GAACNNNNNNTAC	2 cut(s)	960, 992
RsaI	GTAC	4 cut(s)	233, 437, 518, 843
RsaNI	GTAC	4 cut(s)	232, 436, 517, 842
RseI	CAYNNNNRTG	3 cut(s)	528, 664, 1141
SaqAI	TTAA	2 cut(s)	1035, 1104
SatI	GCNGC	3 cut(s)	108, 172, 206
Sau3AI	GATC	1 cut(s)	727
Sau96I	GGNCC	3 cut(s)	145, 203, 916
ScaI	AGTACT	2 cut(s)	437, 518
SchI	GAGTC	1 cut(s)	899
ScrFI	CCNGG	3 cut(s)	56, 854, 965
SfaNI	GCATC	1 cut(s)	543
SfcI	CTRYAG	2 cut(s)	745, 828
SinI	GGWCC	2 cut(s)	145, 916
SmiMI	CAYNNNNRTG	3 cut(s)	528, 664, 1141
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
SpeI	ACTAGT	1 cut(s)	644
SphI	GCATGC	1 cut(s)	527
Sse9I	AATT	7 cut(s)	97, 139, 235, 308, 426, 459, 926
SsiI	CCGC	3 cut(s)	5, 206, 451
SspMI	CTAG	2 cut(s)	618, 645
StyD4I	CCNGG	3 cut(s)	54, 852, 963
StyI	CCWWGG	1 cut(s)	912
TaaI	ACNGT	3 cut(s)	25, 545, 749
TaiI	ACGT	2 cut(s)	329, 813
TaqI	TCGA	2 cut(s)	45, 505
TaqII	GACCGA	1 cut(s)	933
TasI	AATT	7 cut(s)	97, 139, 235, 308, 426, 459, 926
TatI	WGTACW	3 cut(s)	231, 435, 516
TauI	GCSGC	1 cut(s)	208
TfiI	GAWTC	1 cut(s)	1046
Tru1I	TTAA	2 cut(s)	1035, 1104
Tru9I	TTAA	2 cut(s)	1035, 1104
TscAI	CASTG	2 cut(s)	28, 946
TseFI	GTSAC	4 cut(s)	25, 322, 545, 937
TseI	GCWGC	2 cut(s)	107, 171
Tsp45I	GTSAC	4 cut(s)	25, 322, 545, 937
TspDTI	ATGAA	5 cut(s)	237, 288, 363, 599, 1038
TspRI	CASTG	2 cut(s)	28, 946
VpaK11BI	GGWCC	2 cut(s)	145, 916
XapI	RAATTY	2 cut(s)	308, 926
XceI	RCATGY	2 cut(s)	527, 1073
XmiI	GTMKAC	1 cut(s)	744
XmnI	GAANNNNTTC	2 cut(s)	309, 699
XspI	CTAG	2 cut(s)	618, 645
ZrmI	AGTACT	2 cut(s)	437, 518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.