Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0012226

Physical Location & Seq

Genomic Coordinates Reverse (-)

8557724 .. 8559121

Gene Structure 1398 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g11980.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGAATACTTGCATGCAAATGGAATTATCCACCGTGACCTGAAACCAGCCAACCTACTCCTTACAGAAGACCTGAACAAGATTAAGGTGGCTGACTTTGGCCACGCAAGGGAGGTAATATCCGGGGACATGACATCTGAGGCTGGGACCTACAGATGGATGGCTCCCGAGCTATTCAGCAAGGAGCCAGTTCCAAAAGGAACGAAGAAGGAATATGATCACAAGGCAGATGTGTACAGCTTTTCGATAGTTCTGTGGGAACTGATTGTAAACCGAATTCCTTTCTCTGGACGGACTAATATATTGGTTGCATATGCATCGGCGAATCAAATACGGCCAGAGCTGGACGACATTCCTCAGGACCTCGTGCCGCTATTGGAGTCCTGTTGGGCAGATGACCCAAGGATCCGACCTGAGTTCATGGAGATCACGAGCCATCTTTCCAACTATCACAAGCAACTGTGTGCAGCTGAGACGGAACCTCCAGCAGTCAATGTGCCGGAAGCTGAACATCAAGAGAGCAACGTGAAGGAACAAGAGCCTCCCGAAGTCCAACTGATTGACAGGTCCGAAAAGAAAAAGAAAGCTAAAAGGAGAAAGAAGTGCAGATCAAGTTTCTTCTTGTTTTGCTGTCGACCTGTAGCGGTGCATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04013 ko04064 ko04140 ko04152 ko04214 ko04310 ko04380 ko04520 ko04620 ko04621 ko04622 ko04624 ko04657 ko04660 ko04668 ko05140 ko05145 ko05162 ko05168 ko05169 ko05418 map04010 map04013 map04064 map04140 map04152 map04214 map04310 map04380 map04520 map04620 map04621 map04622 map04624 map04657 map04660 map04668 map05140 map05145 map05162 map05168 map05169 map05418

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

219

Amino Acids

25.02

Weight (kDa)

6.09

Isoelectric Point (pI)

57.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012226)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50720 AT3G50730 AT5G66710
fragaria_vesca	FvH4_1g13890
malus_domestica	MD15G1266800.v1.1
prunus_persica	Prupe.7G150600_v2.0.a1
pyrus_communis	pycom02g11980 pycom12g17500 pycom17g26870
rosa_chinensis	RchiOBHm_Chr2g0102201
rosa_laevigata	RLG00000017138
rosa_multiflora	Rmu_sc0010937.1_g000009
rosa_roxburghii	Rroxscaffold_2G00140690
rosa_rugosa	Rorug02G0105400
rosa_samantha	Rh2AG153500 Rh2BG159400 Rh2CG158900 Rh2DG159100
rosa_wichuraiana	Rw2G011990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	634
AciI	CCGC	2 cut(s)	371, 644
AclWI	GGATC	2 cut(s)	400, 413
AcoI	YGGCCR	2 cut(s)	100, 335
AcsI	RAATTY	1 cut(s)	276
AfaI	GTAC	1 cut(s)	236
AfiI	CCNNNNNNNGG	3 cut(s)	109, 156, 287
AluBI	AGCT	6 cut(s)	172, 240, 343, 470, 506, 587
AluI	AGCT	6 cut(s)	172, 240, 343, 470, 506, 587
Alw26I	GTCTC	1 cut(s)	467
AlwI	GGATC	2 cut(s)	400, 413
Ama87I	CYCGRG	1 cut(s)	167
AoxI	GGCC	2 cut(s)	100, 335
ApeKI	GCWGC	1 cut(s)	467
ApoI	RAATTY	1 cut(s)	276
AspS9I	GGNCC	3 cut(s)	147, 361, 567
AsuC2I	CCSGG	1 cut(s)	124
AvaI	CYCGRG	1 cut(s)	167
AvaII	GGWCC	3 cut(s)	147, 361, 567
AxyI	CCTNAGG	1 cut(s)	357
BalI	TGGCCA	1 cut(s)	102
BamHI	GGATCC	1 cut(s)	405
BauI	CACGAG	2 cut(s)	365, 430
BbsI	GAAGAC	1 cut(s)	75
BbvI	GCAGC	1 cut(s)	479
BccI	CCATC	3 cut(s)	150, 154, 444
BceAI	ACGGC	1 cut(s)	350
BcgI	CGANNNNNNTGC	2 cut(s)	300, 334
BclI	TGATCA	1 cut(s)	217
BcnI	CCSGG	1 cut(s)	124
BcoDI	GTCTC	1 cut(s)	467
BfmI	CTRYAG	2 cut(s)	151, 639
BisI	GCNGC	2 cut(s)	371, 468
BlsI	GCNGC	2 cut(s)	372, 469
Bme1390I	CCNGG	1 cut(s)	124
Bme18I	GGWCC	3 cut(s)	147, 361, 567
BmeT110I	CYCGRG	1 cut(s)	167
BmgT120I	GGNCC	3 cut(s)	147, 361, 567
BmiI	GGNNCC	5 cut(s)	148, 165, 186, 407, 480
BmrFI	CCNGG	1 cut(s)	124
BmsI	GCATC	1 cut(s)	326
BpiI	GAAGAC	1 cut(s)	75
BpmI	CTGGAG	1 cut(s)	468
BpuMI	CCSGG	1 cut(s)	124
BsaJI	CCNNGG	2 cut(s)	123, 401
BsaXI	ACNNNNNCTCC	2 cut(s)	466, 496
Bsc4I	CCNNNNNNNGG	3 cut(s)	109, 156, 287
Bse1I	ACTGG	1 cut(s)	188
Bse21I	CCTNAGG	1 cut(s)	357
BseDI	CCNNGG	2 cut(s)	123, 401
BseGI	GGATG	1 cut(s)	165
BseLI	CCNNNNNNNGG	3 cut(s)	109, 156, 287
BseMII	CTCAG	4 cut(s)	129, 371, 405, 462
BseNI	ACTGG	1 cut(s)	188
BseXI	GCAGC	1 cut(s)	479
BseYI	CCCAGC	1 cut(s)	143
BsgI	GTGCAG	2 cut(s)	486, 625
BshFI	GGCC	2 cut(s)	102, 337
BsiHKCI	CYCGRG	1 cut(s)	167
BsiSI	CCGG	2 cut(s)	123, 500
BslFI	GGGAC	2 cut(s)	140, 160
BslI	CCNNNNNNNGG	3 cut(s)	109, 156, 287
BsmAI	GTCTC	1 cut(s)	467
BsmBI	CGTCTC	1 cut(s)	467
BsmFI	GGGAC	2 cut(s)	140, 160
BsnI	GGCC	2 cut(s)	102, 337
BsoBI	CYCGRG	1 cut(s)	167
Bsp1407I	TGTACA	1 cut(s)	234
Bsp143I	GATC	4 cut(s)	217, 405, 426, 608
BspACI	CCGC	2 cut(s)	371, 644
BspANI	GGCC	2 cut(s)	102, 337
BspCNI	CTCAG	4 cut(s)	130, 370, 406, 463
BspLI	GGNNCC	5 cut(s)	148, 165, 186, 407, 480
BspPI	GGATC	2 cut(s)	400, 413
BsrGI	TGTACA	1 cut(s)	234
BsrI	ACTGG	1 cut(s)	188
BssECI	CCNNGG	2 cut(s)	123, 401
BssMI	GATC	4 cut(s)	217, 405, 426, 608
BssSI	CACGAG	2 cut(s)	365, 430
BssT1I	CCWWGG	1 cut(s)	401
Bst2BI	CACGAG	2 cut(s)	365, 430
Bst4CI	ACNGT	2 cut(s)	35, 462
BstAUI	TGTACA	1 cut(s)	234
BstC8I	GCNNGC	1 cut(s)	15
BstDEI	CTNAG	4 cut(s)	138, 357, 414, 471
BstF5I	GGATG	1 cut(s)	165
BstKTI	GATC	4 cut(s)	220, 408, 429, 611
BstMAI	GTCTC	1 cut(s)	467
BstMBI	GATC	4 cut(s)	217, 405, 426, 608
BstNSI	RCATGY	1 cut(s)	17
BstSCI	CCNGG	1 cut(s)	122
BstSFI	CTRYAG	2 cut(s)	151, 639
BstV1I	GCAGC	1 cut(s)	479
BstV2I	GAAGAC	1 cut(s)	75
BstX2I	RGATCY	1 cut(s)	405
BstYI	RGATCY	1 cut(s)	405
Bsu36I	CCTNAGG	1 cut(s)	357
BsuRI	GGCC	2 cut(s)	102, 337
BtsCI	GGATG	1 cut(s)	165
Cac8I	GCNNGC	1 cut(s)	15
Cfr13I	GGNCC	3 cut(s)	147, 361, 567
Csp6I	GTAC	1 cut(s)	235
CviAII	CATG	4 cut(s)	14, 130, 421, 650
CviQI	GTAC	1 cut(s)	235
DdeI	CTNAG	4 cut(s)	138, 357, 414, 471
DpnI	GATC	4 cut(s)	219, 407, 428, 610
DpnII	GATC	4 cut(s)	217, 405, 426, 608
EaeI	YGGCCR	2 cut(s)	100, 335
Eco130I	CCWWGG	1 cut(s)	401
Eco47I	GGWCC	3 cut(s)	147, 361, 567
Eco81I	CCTNAGG	1 cut(s)	357
Eco88I	CYCGRG	1 cut(s)	167
EcoO109I	RGGNCCY	2 cut(s)	147, 361
EcoRI	GAATTC	1 cut(s)	276
EcoT14I	CCWWGG	1 cut(s)	401
EcoT22I	ATGCAT	1 cut(s)	319
ErhI	CCWWGG	1 cut(s)	401
Esp3I	CGTCTC	1 cut(s)	467
FaeI	CATG	4 cut(s)	17, 133, 424, 653
FaiI	YATR	8 cut(s)	15, 131, 216, 302, 313, 315, 422, 651
FaqI	GGGAC	2 cut(s)	140, 160
FatI	CATG	4 cut(s)	13, 129, 420, 649
FauNDI	CATATG	1 cut(s)	313
FbaI	TGATCA	1 cut(s)	217
FblI	GTMKAC	1 cut(s)	634
Fnu4HI	GCNGC	2 cut(s)	371, 468
FokI	GGATG	1 cut(s)	172
Fsp4HI	GCNGC	2 cut(s)	371, 468
GluI	GCNGC	2 cut(s)	371, 468
GsaI	CCCAGC	1 cut(s)	147
GsuI	CTGGAG	1 cut(s)	468
HaeIII	GGCC	2 cut(s)	102, 337
HapII	CCGG	2 cut(s)	123, 500
Hin1II	CATG	4 cut(s)	17, 133, 424, 653
HincII	GTYRAC	1 cut(s)	635
HindII	GTYRAC	1 cut(s)	635
HinfI	GANTC	2 cut(s)	325, 380
HpaII	CCGG	2 cut(s)	123, 500
Hpy166II	GTNNAC	3 cut(s)	235, 271, 635
Hpy188I	TCNGA	3 cut(s)	139, 410, 571
Hpy188III	TCNNGA	6 cut(s)	167, 288, 359, 430, 515, 545
Hpy8I	GTNNAC	3 cut(s)	235, 271, 635
HpyAV	CCTTC	2 cut(s)	202, 523
HpyCH4III	ACNGT	2 cut(s)	35, 462
HpyCH4IV	ACGT	1 cut(s)	525
HpyCH4V	TGCA	7 cut(s)	13, 17, 311, 317, 467, 606, 649
HpyF3I	CTNAG	4 cut(s)	138, 357, 414, 471
HpySE526I	ACGT	1 cut(s)	525
Hsp92II	CATG	4 cut(s)	17, 133, 424, 653
Ksp22I	TGATCA	1 cut(s)	217
Kzo9I	GATC	4 cut(s)	217, 405, 426, 608
LmnI	GCTCC	2 cut(s)	169, 184
Lsp1109I	GCAGC	1 cut(s)	479
LweI	GCATC	1 cut(s)	326
MaeII	ACGT	1 cut(s)	525
MaeIII	GTNAC	1 cut(s)	35
MalI	GATC	4 cut(s)	219, 407, 428, 610
MboI	GATC	4 cut(s)	217, 405, 426, 608
MboII	GAAGA	3 cut(s)	80, 217, 610
MflI	RGATCY	1 cut(s)	405
MlsI	TGGCCA	1 cut(s)	102
MluCI	AATT	2 cut(s)	24, 276
MluNI	TGGCCA	1 cut(s)	102
MlyI	GAGTC	1 cut(s)	389
MmeI	TCCRAC	3 cut(s)	433, 468, 577
MnlI	CCTC	6 cut(s)	106, 133, 366, 374, 492, 552
Mox20I	TGGCCA	1 cut(s)	102
Mph1103I	ATGCAT	1 cut(s)	319
MscI	TGGCCA	1 cut(s)	102
MseI	TTAA	1 cut(s)	84
MslI	CAYNNNNRTG	1 cut(s)	18
Msp20I	TGGCCA	1 cut(s)	102
MspA1I	CMGCKG	1 cut(s)	470
MspI	CCGG	2 cut(s)	123, 500
MspR9I	CCNGG	1 cut(s)	124
NciI	CCSGG	1 cut(s)	124
NdeI	CATATG	1 cut(s)	313
NdeII	GATC	4 cut(s)	217, 405, 426, 608
NlaIII	CATG	4 cut(s)	17, 133, 424, 653
NlaIV	GGNNCC	5 cut(s)	148, 165, 186, 407, 480
NmuCI	GTSAC	1 cut(s)	35
NsiI	ATGCAT	1 cut(s)	319
NspI	RCATGY	1 cut(s)	17
PaeI	GCATGC	1 cut(s)	17
PfeI	GAWTC	1 cut(s)	325
PkrI	GCNGC	2 cut(s)	372, 469
PleI	GAGTC	1 cut(s)	388
PpsI	GAGTC	1 cut(s)	388
PpuMI	RGGWCCY	2 cut(s)	147, 361
Psp5II	RGGWCCY	2 cut(s)	147, 361
PspFI	CCCAGC	1 cut(s)	143
PspN4I	GGNNCC	5 cut(s)	148, 165, 186, 407, 480
PspPI	GGNCC	3 cut(s)	147, 361, 567
PspPPI	RGGWCCY	2 cut(s)	147, 361
PsuI	RGATCY	1 cut(s)	405
PvuII	CAGCTG	1 cut(s)	470
RsaI	GTAC	1 cut(s)	236
RsaNI	GTAC	1 cut(s)	235
RseI	CAYNNNNRTG	1 cut(s)	18
SalI	GTCGAC	1 cut(s)	633
SaqAI	TTAA	1 cut(s)	84
SatI	GCNGC	2 cut(s)	371, 468
Sau3AI	GATC	4 cut(s)	217, 405, 426, 608
Sau96I	GGNCC	3 cut(s)	147, 361, 567
SchI	GAGTC	1 cut(s)	389
ScrFI	CCNGG	1 cut(s)	124
SfaNI	GCATC	1 cut(s)	326
SfcI	CTRYAG	2 cut(s)	151, 639
SinI	GGWCC	3 cut(s)	147, 361, 567
SmiMI	CAYNNNNRTG	1 cut(s)	18
SphI	GCATGC	1 cut(s)	17
Sse9I	AATT	2 cut(s)	24, 276
SsiI	CCGC	2 cut(s)	371, 644
StyD4I	CCNGG	1 cut(s)	122
StyI	CCWWGG	1 cut(s)	401
TaaI	ACNGT	2 cut(s)	35, 462
TaiI	ACGT	1 cut(s)	528
TaqI	TCGA	2 cut(s)	245, 634
TasI	AATT	2 cut(s)	24, 276
TatI	WGTACW	1 cut(s)	234
TauI	GCSGC	1 cut(s)	373
TfiI	GAWTC	1 cut(s)	325
Tru1I	TTAA	1 cut(s)	84
Tru9I	TTAA	1 cut(s)	84
TseFI	GTSAC	1 cut(s)	35
TseI	GCWGC	1 cut(s)	467
Tsp45I	GTSAC	1 cut(s)	35
TspDTI	ATGAA	1 cut(s)	409
TspGWI	ACGGA	2 cut(s)	307, 491
VpaK11BI	GGWCC	3 cut(s)	147, 361, 567
XapI	RAATTY	1 cut(s)	276
XceI	RCATGY	1 cut(s)	17
XmiI	GTMKAC	1 cut(s)	634
Zsp2I	ATGCAT	1 cut(s)	319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.