pycom12g17500
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
Physical Location & Seq
Forward (+)
19899900 .. 19900579
680 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g17500.2

Sequence Viewer

Length: 396 bp
ATGAGTTGCAGAGTGAGGAGCGGCGGAAGGGAAGAGAGGGAGCGTGAGCAAGCGGTTTTGAGGAACTCTGTGGAGGGTGTCGAGCCTAAATCAGGCACGCAGAATGGTTTGATTGCTGCCCAGAAGCTGACAATCGACGACAATTTGCTGGTGGACCCGAAATTGTTGTTTATCGGGGCAAAAATTGGTGAGGGAGCGCATGGGAAGGTTTATGAAGGAAGGTACGGAAATCAAATTGTGGCTGTCAAAGTCCTCCATCGTGGTAGCACTACCGAAGAAAGAGCTGCACTTGAGGGTCGTTTTGCCCGTGAAGTTAATATGATGTCGCGAGTAAAACATGAAAATCTTGTTAAGGTAAGCCGTTGGCTTTCAAGTTGGTTTCAGTGGAATTCTTAA

Protein Analysis

132

Amino Acids

14.72

Weight (kDa)

9.66

Isoelectric Point (pI)

28.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012226)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 21
AccII CGCG 1 cut(s) 328
AciI CCGC 3 cut(s) 21, 24, 53
AcsI RAATTY 1 cut(s) 388
AfaI GTAC 1 cut(s) 224
AfiI CCNNNNNNNGG 1 cut(s) 92
AgsI TTSAA 1 cut(s) 372
AluBI AGCT 2 cut(s) 127, 284
AluI AGCT 2 cut(s) 127, 284
AlwNI CAGNNNCTG 1 cut(s) 127
ApeKI GCWGC 2 cut(s) 116, 284
ApoI RAATTY 1 cut(s) 388
AspLEI GCGC 1 cut(s) 199
AspS9I GGNCC 1 cut(s) 154
AsuHPI GGTGA 1 cut(s) 200
AvaII GGWCC 1 cut(s) 154
BbvI GCAGC 2 cut(s) 103, 271
BccI CCATC 1 cut(s) 264
BceAI ACGGC 1 cut(s) 345
BisI GCNGC 3 cut(s) 22, 117, 285
BlsI GCNGC 3 cut(s) 23, 118, 286
Bme18I GGWCC 1 cut(s) 154
BmgT120I GGNCC 1 cut(s) 154
BmiI GGNNCC 1 cut(s) 156
BpuEI CTTGAG 1 cut(s) 311
Bsc4I CCNNNNNNNGG 1 cut(s) 92
BseLI CCNNNNNNNGG 1 cut(s) 92
BseRI GAGGAG 1 cut(s) 31
BseXI GCAGC 2 cut(s) 103, 271
BsgI GTGCAG 1 cut(s) 270
Bsh1236I CGCG 1 cut(s) 328
BslI CCNNNNNNNGG 1 cut(s) 92
Bsp68I TCGCGA 1 cut(s) 328
BspACI CCGC 3 cut(s) 21, 24, 53
BspFNI CGCG 1 cut(s) 328
BspLI GGNNCC 1 cut(s) 156
BsrBI CCGCTC 1 cut(s) 21
Bst6I CTCTTC 1 cut(s) 27
BstC8I GCNNGC 2 cut(s) 51, 98
BstENI CCTNNNNNAGG 1 cut(s) 90
BstFNI CGCG 1 cut(s) 328
BstHHI GCGC 1 cut(s) 199
BstUI CGCG 1 cut(s) 328
BstV1I GCAGC 2 cut(s) 103, 271
BtsIMutI CAGTG 1 cut(s) 389
BtuMI TCGCGA 1 cut(s) 328
Cac8I GCNNGC 2 cut(s) 51, 98
CaiI CAGNNNCTG 1 cut(s) 127
CfoI GCGC 1 cut(s) 199
Cfr13I GGNCC 1 cut(s) 154
Csp6I GTAC 1 cut(s) 223
CviAII CATG 2 cut(s) 200, 338
CviJI RGCY 6 cut(s) 85, 127, 242, 284, 360, 367
CviKI_1 RGCY 6 cut(s) 85, 127, 242, 284, 360, 367
CviQI GTAC 1 cut(s) 223
Eam1104I CTCTTC 1 cut(s) 27
EarI CTCTTC 1 cut(s) 27
EciI GGCGGA 1 cut(s) 39
Eco47I GGWCC 1 cut(s) 154
EcoNI CCTNNNNNAGG 1 cut(s) 90
EcoRI GAATTC 1 cut(s) 388
FaeI CATG 2 cut(s) 203, 341
FaiI YATR 4 cut(s) 201, 213, 320, 339
FatI CATG 2 cut(s) 199, 337
Fnu4HI GCNGC 3 cut(s) 22, 117, 285
Fsp4HI GCNGC 3 cut(s) 22, 117, 285
GlaI GCGC 1 cut(s) 198
GluI GCNGC 3 cut(s) 22, 117, 285
HhaI GCGC 1 cut(s) 199
Hin1II CATG 2 cut(s) 203, 341
Hin6I GCGC 1 cut(s) 197
HinP1I GCGC 1 cut(s) 197
HphI GGTGA 1 cut(s) 200
Hpy166II GTNNAC 1 cut(s) 154
Hpy188III TCNNGA 1 cut(s) 327
Hpy8I GTNNAC 1 cut(s) 154
Hpy99I CGWCG 1 cut(s) 140
HpyAV CCTTC 4 cut(s) 21, 199, 209, 213
HpyCH4V TGCA 2 cut(s) 9, 287
Hsp92II CATG 2 cut(s) 203, 341
HspAI GCGC 1 cut(s) 197
LmnI GCTCC 3 cut(s) 18, 40, 194
LpnPI CCDG 3 cut(s) 78, 134, 134
Lsp1109I GCAGC 2 cut(s) 103, 271
MbiI CCGCTC 1 cut(s) 21
MboII GAAGA 2 cut(s) 44, 287
MluCI AATT 5 cut(s) 142, 161, 183, 234, 388
MnlI CCTC 7 cut(s) 9, 30, 54, 67, 184, 263, 286
MseI TTAA 3 cut(s) 315, 351, 394
MvnI CGCG 1 cut(s) 328
NlaIII CATG 2 cut(s) 203, 341
NlaIV GGNNCC 1 cut(s) 156
NruI TCGCGA 1 cut(s) 328
PcsI WCGNNNNNNNCGW 1 cut(s) 304
PkrI GCNGC 3 cut(s) 23, 118, 286
PspN4I GGNNCC 1 cut(s) 156
PspPI GGNCC 1 cut(s) 154
PstNI CAGNNNCTG 1 cut(s) 127
RruI TCGCGA 1 cut(s) 328
RsaI GTAC 1 cut(s) 224
RsaNI GTAC 1 cut(s) 223
SaqAI TTAA 3 cut(s) 315, 351, 394
SatI GCNGC 3 cut(s) 22, 117, 285
Sau96I GGNCC 1 cut(s) 154
SetI ASST 5 cut(s) 129, 210, 224, 286, 357
SinI GGWCC 1 cut(s) 154
SmlI CTYRAG 1 cut(s) 290
SmoI CTYRAG 1 cut(s) 290
Sse9I AATT 5 cut(s) 142, 161, 183, 234, 388
SsiI CCGC 3 cut(s) 21, 24, 53
TaqI TCGA 2 cut(s) 81, 135
TasI AATT 5 cut(s) 142, 161, 183, 234, 388
TauI GCSGC 1 cut(s) 24
Tru1I TTAA 3 cut(s) 315, 351, 394
Tru9I TTAA 3 cut(s) 315, 351, 394
TscAI CASTG 1 cut(s) 389
TseI GCWGC 2 cut(s) 116, 284
TspDTI ATGAA 2 cut(s) 228, 354
TspGWI ACGGA 1 cut(s) 240
TspRI CASTG 1 cut(s) 389
VpaK11BI GGWCC 1 cut(s) 154
XagI CCTNNNNNAGG 1 cut(s) 90
XapI RAATTY 1 cut(s) 388
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.