Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0012226

Physical Location & Seq

Genomic Coordinates Forward (+)

78987341 .. 78991624

Gene Structure 4284 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00140690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGCAAGCTCCAGCAATGGCGGGACATGGCGTGTTCACTGTCACCGATAACGAACTCTTCGACTACTACCCGGTCTGCTATCTCAAGAACGACGCCAGCAACGATGATGAGAATTGTGTTCCAGCTAAAGGCAAAGGCAACAACTTTGTGTTCAATTTGGACCCAAGTTTGCTTATTGACCCAAGCTGCGTTATGGTTGGTGAAATGCTCGGAGAAGGGCCGCAGGCGATTGTCTATGAAGGATTGTACAATTACAAACCTGTTGCTGTGAAAATCATACAGCCAGATGAAACAGGTGTTATCAGTCCTGAACGCAAGGAAAAATTTCAGAGGGAGGTGACGTTGCTGTCAAAGGCGAGACATGAAAACATTGTGAAGTTTATCGGTGCGTCTGTGAAACCAACTATGATGATAGTTACTGAGCTTATGAGAGGTGGCACAATTCAGAAGTACTTGTGGAACACCCGCCCCGTAATTCCTGACTTGAAGCTTTCAATAAGTTTTGCATTGGATATATGTCGAGCTATGGAGTACTTGCATGCAAACGGCATCATACACCGTGACTTGAAGCCAAGCAATCTACTTCTTACAGAAAACATGAAACAAGTGAAGCTGGCTGACTTTGGGCTTGCTAGAGAGCAGATAGAAGGTGCAATGACTAGTGAGGCTGGAACATACCGGTGGATGGCTCCTGAGTTATTCAGCACAGAACCAGTTCCAAGAGGTGCAAAGATAGATTATGATCACAAGGCAGATGTCTACAGTTTCTCAATAGTTCTGTGGGAGTTGCTCACGAACAAAACTCCATACAAGGGAAGGAATAACGTAATGGTGGCATATGCTACAGCTAACAATGTACGGCCTAACCTGGAGGACATTCCCGAGGGTATTATTCCTCTACTGGAGTCCTGCTGGGCAGAAGACCCCAAGGACAGACCAGAATTTATGGAAGTCACCGATTATCTCTCCAACTTCTACCAGGAACATTGCTTACAGGAGACCAAACCTCCTCCTAAGGTCATTGAGACTGAAGATAATGAGAGGAACATAAAGGTCATTAAGACTGAAGATAATGAGAGGAACATTAAAGAAGAAGATTCGCCAAGCACCACTCAACAACATGTGATTGAGACACCTGAAGAAGAGAAAAGGGTTAAAAGGCGCAAGAAGAGTTGGAAGAGTTGGTCATCGGGGTGGTTCTGTTTCTCTTGTTTGGCTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04013 ko04064 ko04140 ko04152 ko04214 ko04310 ko04380 ko04520 ko04620 ko04621 ko04622 ko04624 ko04657 ko04660 ko04668 ko05140 ko05145 ko05162 ko05168 ko05169 ko05418 map04010 map04013 map04064 map04140 map04152 map04214 map04310 map04380 map04520 map04620 map04621 map04622 map04624 map04657 map04660 map04668 map05140 map05145 map05162 map05168 map05169 map05418

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

407

Amino Acids

46.42

Weight (kDa)

5.33

Isoelectric Point (pI)

45.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	66 - 321	2.1e-55	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	67 - 319	3.3e-50	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012226)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50720 AT3G50730 AT5G66710
fragaria_vesca	FvH4_1g13890
malus_domestica	MD15G1266800.v1.1
prunus_persica	Prupe.7G150600_v2.0.a1
pyrus_communis	pycom02g11980 pycom12g17500 pycom17g26870
rosa_chinensis	RchiOBHm_Chr2g0102201
rosa_laevigata	RLG00000017138
rosa_multiflora	Rmu_sc0010937.1_g000009
rosa_roxburghii	Rroxscaffold_2G00140690
rosa_rugosa	Rorug02G0105400
rosa_samantha	Rh2AG153500 Rh2BG159400 Rh2CG158900 Rh2DG159100
rosa_wichuraiana	Rw2G011990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	346
AccI	GTMKAC	1 cut(s)	759
AciI	CCGC	3 cut(s)	20, 221, 466
AcsI	RAATTY	2 cut(s)	323, 941
AcuI	CTGAAG	3 cut(s)	1050, 1086, 1158
AcyI	GRCGYC	1 cut(s)	93
AfaI	GTAC	4 cut(s)	248, 452, 533, 858
AfiI	CCNNNNNNNGG	3 cut(s)	128, 685, 812
AflIII	ACRYGT	1 cut(s)	1120
AgeI	ACCGGT	1 cut(s)	678
AgsI	TTSAA	4 cut(s)	154, 487, 495, 568
AhlI	ACTAGT	1 cut(s)	659
AjnI	CCWGG	2 cut(s)	867, 978
AluBI	AGCT	8 cut(s)	8, 125, 186, 424, 490, 524, 613, 848
AluI	AGCT	8 cut(s)	8, 125, 186, 424, 490, 524, 613, 848
Alw26I	GTCTC	4 cut(s)	352, 992, 1019, 1124
Ama87I	CYCGRG	1 cut(s)	881
AoxI	GGCC	2 cut(s)	218, 860
ApeKI	GCWGC	1 cut(s)	186
ApoI	RAATTY	2 cut(s)	323, 941
AsiGI	ACCGGT	1 cut(s)	678
Asp700I	GAANNNNTTC	2 cut(s)	324, 714
AspLEI	GCGC	1 cut(s)	1164
AspS9I	GGNCC	2 cut(s)	160, 218
AsuC2I	CCSGG	1 cut(s)	71
AsuHPI	GGTGA	4 cut(s)	34, 212, 349, 946
AvaI	CYCGRG	1 cut(s)	881
AvaII	GGWCC	1 cut(s)	160
AxyI	CCTNAGG	1 cut(s)	1014
BbsI	GAAGAC	1 cut(s)	927
BbvI	GCAGC	1 cut(s)	173
BccI	CCATC	1 cut(s)	679
BceAI	ACGGC	2 cut(s)	562, 875
BciT130I	CCWGG	2 cut(s)	869, 980
BclI	TGATCA	1 cut(s)	742
BcnI	CCSGG	1 cut(s)	71
BcoDI	GTCTC	4 cut(s)	352, 992, 1019, 1124
BcuI	ACTAGT	1 cut(s)	659
BfaI	CTAG	2 cut(s)	633, 660
BfmI	CTRYAG	2 cut(s)	760, 843
BisI	GCNGC	2 cut(s)	187, 221
BlsI	GCNGC	2 cut(s)	188, 222
BmcAI	AGTACT	2 cut(s)	452, 533
Bme1390I	CCNGG	3 cut(s)	71, 869, 980
Bme18I	GGWCC	1 cut(s)	160
BmeT110I	CYCGRG	1 cut(s)	881
BmgT120I	GGNCC	2 cut(s)	160, 218
BmiI	GGNNCC	2 cut(s)	162, 690
BmrFI	CCNGG	3 cut(s)	71, 869, 980
BmsI	GCATC	1 cut(s)	558
BpiI	GAAGAC	1 cut(s)	927
BpmI	CTGGAG	2 cut(s)	890, 923
BpuEI	CTTGAG	1 cut(s)	68
BpuMI	CCSGG	1 cut(s)	71
BsaBI	GATNNNNATC	1 cut(s)	741
BsaHI	GRCGYC	1 cut(s)	93
BsaI	GGTCTC	1 cut(s)	992
BsaJI	CCNNGG	2 cut(s)	882, 927
BsaWI	WCCGGW	1 cut(s)	678
BsaXI	ACNNNNNCTCC	4 cut(s)	326, 356, 991, 1021
Bsc4I	CCNNNNNNNGG	3 cut(s)	128, 685, 812
Bse118I	RCCGGY	1 cut(s)	678
Bse1I	ACTGG	2 cut(s)	713, 906
Bse21I	CCTNAGG	1 cut(s)	1014
Bse3DI	GCAATG	3 cut(s)	21, 660, 985
Bse8I	GATNNNNATC	1 cut(s)	741
BseBI	CCWGG	2 cut(s)	869, 980
BseDI	CCNNGG	2 cut(s)	882, 927
BseGI	GGATG	1 cut(s)	690
BseJI	GATNNNNATC	1 cut(s)	741
BseLI	CCNNNNNNNGG	3 cut(s)	128, 685, 812
BseMI	GCAATG	3 cut(s)	21, 660, 985
BseMII	CTCAG	2 cut(s)	411, 684
BseNI	ACTGG	2 cut(s)	713, 906
BseRI	GAGGAG	1 cut(s)	999
BseXI	GCAGC	1 cut(s)	173
BseYI	CCCAGC	1 cut(s)	912
BshFI	GGCC	2 cut(s)	220, 862
BshTI	ACCGGT	1 cut(s)	678
BsiHKCI	CYCGRG	1 cut(s)	881
BsiSI	CCGG	2 cut(s)	71, 679
BslFI	GGGAC	1 cut(s)	36
BslI	CCNNNNNNNGG	3 cut(s)	128, 685, 812
BsmAI	GTCTC	4 cut(s)	352, 992, 1019, 1124
BsmFI	GGGAC	1 cut(s)	36
BsnI	GGCC	2 cut(s)	220, 862
Bso31I	GGTCTC	1 cut(s)	992
BsoBI	CYCGRG	1 cut(s)	881
Bsp1407I	TGTACA	1 cut(s)	246
Bsp143I	GATC	1 cut(s)	742
BspACI	CCGC	3 cut(s)	20, 221, 466
BspANI	GGCC	2 cut(s)	220, 862
BspCNI	CTCAG	2 cut(s)	412, 685
BspLI	GGNNCC	2 cut(s)	162, 690
BspTNI	GGTCTC	1 cut(s)	992
BsrDI	GCAATG	3 cut(s)	21, 660, 985
BsrFI	RCCGGY	1 cut(s)	678
BsrGI	TGTACA	1 cut(s)	246
BsrI	ACTGG	2 cut(s)	713, 906
BssAI	RCCGGY	1 cut(s)	678
BssECI	CCNNGG	2 cut(s)	882, 927
BssMI	GATC	1 cut(s)	742
BssNI	GRCGYC	1 cut(s)	93
BssT1I	CCWWGG	1 cut(s)	927
Bst2UI	CCWGG	2 cut(s)	869, 980
Bst4CI	ACNGT	3 cut(s)	40, 560, 764
Bst6I	CTCTTC	4 cut(s)	62, 1137, 1163, 1172
BstACI	GRCGYC	1 cut(s)	93
BstAUI	TGTACA	1 cut(s)	246
BstC8I	GCNNGC	6 cut(s)	6, 97, 225, 540, 615, 630
BstDEI	CTNAG	3 cut(s)	420, 693, 1014
BstF5I	GGATG	1 cut(s)	690
BstHHI	GCGC	1 cut(s)	1164
BstKTI	GATC	1 cut(s)	745
BstMAI	GTCTC	4 cut(s)	352, 992, 1019, 1124
BstMBI	GATC	1 cut(s)	742
BstNI	CCWGG	2 cut(s)	869, 980
BstNSI	RCATGY	2 cut(s)	542, 1124
BstSCI	CCNGG	3 cut(s)	69, 867, 978
BstSFI	CTRYAG	2 cut(s)	760, 843
BstV1I	GCAGC	1 cut(s)	173
BstV2I	GAAGAC	1 cut(s)	927
Bsu36I	CCTNAGG	1 cut(s)	1014
BsuRI	GGCC	2 cut(s)	220, 862
BtsCI	GGATG	1 cut(s)	690
BtsIMutI	CAGTG	1 cut(s)	36
Cac8I	GCNNGC	6 cut(s)	6, 97, 225, 540, 615, 630
CfoI	GCGC	1 cut(s)	1164
Cfr10I	RCCGGY	1 cut(s)	678
Cfr13I	GGNCC	2 cut(s)	160, 218
CseI	GACGC	2 cut(s)	101, 378
Csp6I	GTAC	4 cut(s)	247, 451, 532, 857
CspAI	ACCGGT	1 cut(s)	678
CviAII	CATG	5 cut(s)	26, 362, 539, 598, 1121
CviQI	GTAC	4 cut(s)	247, 451, 532, 857
DdeI	CTNAG	3 cut(s)	420, 693, 1014
DpnI	GATC	1 cut(s)	744
DpnII	GATC	1 cut(s)	742
DrdI	GACNNNNNNGTC	1 cut(s)	346
DseDI	GACNNNNNNGTC	1 cut(s)	346
Eam1104I	CTCTTC	4 cut(s)	62, 1137, 1163, 1172
EarI	CTCTTC	4 cut(s)	62, 1137, 1163, 1172
Eco130I	CCWWGG	1 cut(s)	927
Eco31I	GGTCTC	1 cut(s)	992
Eco47I	GGWCC	1 cut(s)	160
Eco57I	CTGAAG	3 cut(s)	1050, 1086, 1158
Eco81I	CCTNAGG	1 cut(s)	1014
Eco88I	CYCGRG	1 cut(s)	881
EcoRII	CCWGG	2 cut(s)	867, 978
EcoT14I	CCWWGG	1 cut(s)	927
ErhI	CCWWGG	1 cut(s)	927
FaeI	CATG	5 cut(s)	29, 365, 542, 601, 1124
FaqI	GGGAC	1 cut(s)	36
FatI	CATG	5 cut(s)	25, 361, 538, 597, 1120
FauI	CCCGC	2 cut(s)	13, 473
FauNDI	CATATG	1 cut(s)	838
FbaI	TGATCA	1 cut(s)	742
FblI	GTMKAC	1 cut(s)	759
Fnu4HI	GCNGC	2 cut(s)	187, 221
FokI	GGATG	1 cut(s)	697
Fsp4HI	GCNGC	2 cut(s)	187, 221
FspBI	CTAG	2 cut(s)	633, 660
GlaI	GCGC	1 cut(s)	1163
GluI	GCNGC	2 cut(s)	187, 221
GsaI	CCCAGC	1 cut(s)	916
GsuI	CTGGAG	2 cut(s)	890, 923
HaeIII	GGCC	2 cut(s)	220, 862
HapII	CCGG	2 cut(s)	71, 679
HgaI	GACGC	2 cut(s)	101, 378
HhaI	GCGC	1 cut(s)	1164
Hin1I	GRCGYC	1 cut(s)	93
Hin1II	CATG	5 cut(s)	29, 365, 542, 601, 1124
Hin6I	GCGC	1 cut(s)	1162
HinP1I	GCGC	1 cut(s)	1162
HindIII	AAGCTT	1 cut(s)	488
HinfI	GANTC	2 cut(s)	905, 1097
HpaII	CCGG	2 cut(s)	71, 679
HphI	GGTGA	4 cut(s)	34, 212, 349, 946
Hpy166II	GTNNAC	2 cut(s)	36, 760
Hpy188I	TCNGA	3 cut(s)	212, 330, 447
Hpy188III	TCNNGA	6 cut(s)	85, 308, 479, 692, 793, 881
Hpy8I	GTNNAC	2 cut(s)	36, 760
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	4 cut(s)	209, 233, 641, 810
HpyCH4III	ACNGT	3 cut(s)	40, 560, 764
HpyCH4IV	ACGT	2 cut(s)	341, 825
HpyCH4V	TGCA	6 cut(s)	4, 506, 538, 542, 653, 728
HpyF3I	CTNAG	3 cut(s)	420, 693, 1014
HpySE526I	ACGT	2 cut(s)	341, 825
Hsp92I	GRCGYC	1 cut(s)	93
Hsp92II	CATG	5 cut(s)	29, 365, 542, 601, 1124
HspAI	GCGC	1 cut(s)	1162
Ksp22I	TGATCA	1 cut(s)	742
Kzo9I	GATC	1 cut(s)	742
LmnI	GCTCC	2 cut(s)	13, 694
Lsp1109I	GCAGC	1 cut(s)	173
LweI	GCATC	1 cut(s)	558
MaeI	CTAG	2 cut(s)	633, 660
MaeII	ACGT	2 cut(s)	341, 825
MaeIII	GTNAC	5 cut(s)	40, 337, 415, 560, 952
MalI	GATC	1 cut(s)	744
MboI	GATC	1 cut(s)	742
MluCI	AATT	7 cut(s)	112, 154, 250, 323, 441, 474, 941
MlyI	GAGTC	1 cut(s)	914
MmeI	TCCRAC	2 cut(s)	993, 1154
MroXI	GAANNNNTTC	2 cut(s)	324, 714
MseI	TTAA	3 cut(s)	1059, 1086, 1155
MslI	CAYNNNNRTG	2 cut(s)	679, 1192
MspI	CCGG	2 cut(s)	71, 679
MspR9I	CCNGG	3 cut(s)	71, 869, 980
MvaI	CCWGG	2 cut(s)	869, 980
NciI	CCSGG	1 cut(s)	71
NdeI	CATATG	1 cut(s)	838
NdeII	GATC	1 cut(s)	742
NlaIII	CATG	5 cut(s)	29, 365, 542, 601, 1124
NlaIV	GGNNCC	2 cut(s)	162, 690
NmuCI	GTSAC	4 cut(s)	40, 337, 560, 952
NspI	RCATGY	2 cut(s)	542, 1124
PaeI	GCATGC	1 cut(s)	542
PciI	ACATGT	1 cut(s)	1120
PcsI	WCGNNNNNNNCGW	2 cut(s)	57, 99
PdmI	GAANNNNTTC	2 cut(s)	324, 714
PfeI	GAWTC	1 cut(s)	1097
PinAI	ACCGGT	1 cut(s)	678
PkrI	GCNGC	2 cut(s)	188, 222
PleI	GAGTC	1 cut(s)	913
PpsI	GAGTC	1 cut(s)	913
PscI	ACATGT	1 cut(s)	1120
Psp6I	CCWGG	2 cut(s)	867, 978
PspFI	CCCAGC	1 cut(s)	912
PspGI	CCWGG	2 cut(s)	867, 978
PspN4I	GGNNCC	2 cut(s)	162, 690
PspPI	GGNCC	2 cut(s)	160, 218
PsrI	GAACNNNNNNTAC	2 cut(s)	975, 1007
RsaI	GTAC	4 cut(s)	248, 452, 533, 858
RsaNI	GTAC	4 cut(s)	247, 451, 532, 857
RseI	CAYNNNNRTG	2 cut(s)	679, 1192
SaqAI	TTAA	3 cut(s)	1059, 1086, 1155
SatI	GCNGC	2 cut(s)	187, 221
Sau3AI	GATC	1 cut(s)	742
Sau96I	GGNCC	2 cut(s)	160, 218
ScaI	AGTACT	2 cut(s)	452, 533
SchI	GAGTC	1 cut(s)	914
ScrFI	CCNGG	3 cut(s)	71, 869, 980
SfaNI	GCATC	1 cut(s)	558
SfcI	CTRYAG	2 cut(s)	760, 843
SinI	GGWCC	1 cut(s)	160
SmiMI	CAYNNNNRTG	2 cut(s)	679, 1192
SmlI	CTYRAG	1 cut(s)	83
SmoI	CTYRAG	1 cut(s)	83
SpeI	ACTAGT	1 cut(s)	659
SphI	GCATGC	1 cut(s)	542
Sse9I	AATT	7 cut(s)	112, 154, 250, 323, 441, 474, 941
SsiI	CCGC	3 cut(s)	20, 221, 466
SspMI	CTAG	2 cut(s)	633, 660
StyD4I	CCNGG	3 cut(s)	69, 867, 978
StyI	CCWWGG	1 cut(s)	927
TaaI	ACNGT	3 cut(s)	40, 560, 764
TaiI	ACGT	2 cut(s)	344, 828
TaqI	TCGA	2 cut(s)	60, 520
TasI	AATT	7 cut(s)	112, 154, 250, 323, 441, 474, 941
TatI	WGTACW	3 cut(s)	246, 450, 531
TauI	GCSGC	1 cut(s)	223
TfiI	GAWTC	1 cut(s)	1097
Tru1I	TTAA	3 cut(s)	1059, 1086, 1155
Tru9I	TTAA	3 cut(s)	1059, 1086, 1155
TscAI	CASTG	1 cut(s)	43
TseFI	GTSAC	4 cut(s)	40, 337, 560, 952
TseI	GCWGC	1 cut(s)	186
Tsp45I	GTSAC	4 cut(s)	40, 337, 560, 952
TspDTI	ATGAA	4 cut(s)	252, 303, 378, 614
TspRI	CASTG	1 cut(s)	43
VpaK11BI	GGWCC	1 cut(s)	160
XapI	RAATTY	2 cut(s)	323, 941
XceI	RCATGY	2 cut(s)	542, 1124
XmiI	GTMKAC	1 cut(s)	759
XmnI	GAANNNNTTC	2 cut(s)	324, 714
XspI	CTAG	2 cut(s)	633, 660
ZrmI	AGTACT	2 cut(s)	452, 533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.