pycom17g26870
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Forward (+)
25176266 .. 25176541
276 bp
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UTR
Exon/CDS
Intron
pycom17g26870.1

Sequence Viewer

Length: 276 bp
ATGAGTTGCAGAGTGAGGAGAAGCGGGAGGGAAGAGAGGGAGCGTGAGCAAGCGGTTTTGAGGAACTATGTAGAGGCTGTTGAGCCGAAGTTGGGCACGCAGAATATTTTGATTGCTGCCCAGCAGCTGACAATCGACGAGAATTTGCTGGTGGACCCGAAATTGTTGTTTATCGGGGTGAAATTTGGTGAGGGAGCGCATGGGAAGGTTTATGAAGGAAGGTCAGTCTCAATTCCTTTTCAGTCAACTCTTATGCTCAAACTTGGTTGCTCTTAA

Protein Analysis

92

Amino Acids

10.19

Weight (kDa)

8.71

Isoelectric Point (pI)

46.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012226)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 24, 53
AcsI RAATTY 2 cut(s) 142, 182
AfiI CCNNNNNNNGG 1 cut(s) 92
AluBI AGCT 1 cut(s) 127
AluI AGCT 1 cut(s) 127
Alw26I GTCTC 1 cut(s) 232
AlwNI CAGNNNCTG 1 cut(s) 127
ApeKI GCWGC 2 cut(s) 116, 124
ApoI RAATTY 2 cut(s) 142, 182
AspLEI GCGC 1 cut(s) 199
AspS9I GGNCC 1 cut(s) 154
AsuHPI GGTGA 2 cut(s) 190, 200
AvaII GGWCC 1 cut(s) 154
BaeGI GKGCMC 1 cut(s) 98
BbvI GCAGC 2 cut(s) 103, 136
BcoDI GTCTC 1 cut(s) 232
BisI GCNGC 2 cut(s) 117, 125
BlsI GCNGC 2 cut(s) 118, 126
Bme18I GGWCC 1 cut(s) 154
BmgT120I GGNCC 1 cut(s) 154
BmiI GGNNCC 1 cut(s) 156
Bsc4I CCNNNNNNNGG 1 cut(s) 92
BseLI CCNNNNNNNGG 1 cut(s) 92
BseRI GAGGAG 1 cut(s) 31
BseSI GKGCMC 1 cut(s) 98
BseXI GCAGC 2 cut(s) 103, 136
BseYI CCCAGC 1 cut(s) 120
BslI CCNNNNNNNGG 1 cut(s) 92
BsmAI GTCTC 1 cut(s) 232
Bsp1286I GDGCHC 1 cut(s) 98
BspACI CCGC 2 cut(s) 24, 53
BspLI GGNNCC 1 cut(s) 156
Bst6I CTCTTC 1 cut(s) 27
BstC8I GCNNGC 2 cut(s) 51, 98
BstHHI GCGC 1 cut(s) 199
BstMAI GTCTC 1 cut(s) 232
BstSLI GKGCMC 1 cut(s) 98
BstV1I GCAGC 2 cut(s) 103, 136
Cac8I GCNNGC 2 cut(s) 51, 98
CaiI CAGNNNCTG 1 cut(s) 127
CfoI GCGC 1 cut(s) 199
Cfr13I GGNCC 1 cut(s) 154
CviAII CATG 1 cut(s) 200
CviJI RGCY 3 cut(s) 77, 85, 127
CviKI_1 RGCY 3 cut(s) 77, 85, 127
Eam1104I CTCTTC 1 cut(s) 27
EarI CTCTTC 1 cut(s) 27
Eco47I GGWCC 1 cut(s) 154
FaeI CATG 1 cut(s) 203
FaiI YATR 4 cut(s) 69, 201, 213, 254
FatI CATG 1 cut(s) 199
FauI CCCGC 1 cut(s) 17
Fnu4HI GCNGC 2 cut(s) 117, 125
Fsp4HI GCNGC 2 cut(s) 117, 125
GlaI GCGC 1 cut(s) 198
GluI GCNGC 2 cut(s) 117, 125
GsaI CCCAGC 1 cut(s) 124
HhaI GCGC 1 cut(s) 199
Hin1II CATG 1 cut(s) 203
Hin6I GCGC 1 cut(s) 197
HinP1I GCGC 1 cut(s) 197
HincII GTYRAC 1 cut(s) 246
HindII GTYRAC 1 cut(s) 246
HphI GGTGA 2 cut(s) 190, 200
Hpy166II GTNNAC 2 cut(s) 154, 246
Hpy8I GTNNAC 2 cut(s) 154, 246
Hpy99I CGWCG 1 cut(s) 140
HpyAV CCTTC 3 cut(s) 199, 209, 213
HpyCH4V TGCA 1 cut(s) 9
Hsp92II CATG 1 cut(s) 203
HspAI GCGC 1 cut(s) 197
LmnI GCTCC 2 cut(s) 40, 194
LpnPI CCDG 2 cut(s) 134, 134
Lsp1109I GCAGC 2 cut(s) 103, 136
MboII GAAGA 1 cut(s) 44
MhlI GDGCHC 1 cut(s) 98
MluCI AATT 4 cut(s) 142, 161, 182, 231
MnlI CCTC 6 cut(s) 9, 21, 30, 54, 67, 184
MseI TTAA 1 cut(s) 274
MspA1I CMGCKG 1 cut(s) 127
NlaIII CATG 1 cut(s) 203
NlaIV GGNNCC 1 cut(s) 156
PkrI GCNGC 2 cut(s) 118, 126
PspFI CCCAGC 1 cut(s) 120
PspN4I GGNNCC 1 cut(s) 156
PspPI GGNCC 1 cut(s) 154
PstNI CAGNNNCTG 1 cut(s) 127
PvuII CAGCTG 1 cut(s) 127
SaqAI TTAA 1 cut(s) 274
SatI GCNGC 2 cut(s) 117, 125
Sau96I GGNCC 1 cut(s) 154
SduI GDGCHC 1 cut(s) 98
SetI ASST 3 cut(s) 129, 210, 224
SinI GGWCC 1 cut(s) 154
Sse9I AATT 4 cut(s) 142, 161, 182, 231
SsiI CCGC 2 cut(s) 24, 53
SspI AATATT 1 cut(s) 106
TaqI TCGA 1 cut(s) 135
TasI AATT 4 cut(s) 142, 161, 182, 231
Tru1I TTAA 1 cut(s) 274
Tru9I TTAA 1 cut(s) 274
TseI GCWGC 2 cut(s) 116, 124
TspDTI ATGAA 1 cut(s) 228
VpaK11BI GGWCC 1 cut(s) 154
XapI RAATTY 2 cut(s) 142, 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.