Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012226

Physical Location & Seq

Genomic Coordinates Reverse (-)

18851533 .. 18853137

Gene Structure 1605 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G50730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGATATCTCGAATGATTTTCAGAAACTATCCTTCTCACAATGAGTCCGACGACGAGCCATTCCATTTCAGTATCAGCAGAGAATTGCTTCTCGACCGAAACGATGTCGTAGTGGGAGAGATGATTGGAGAAGGAGCTTACTCCATCGTCTACAAAGGATTGCTAAGAAACCAATTTCCCGTGGCGGTGAAGATCATGGATCCGAGTACAACTTCCGCTGTAACCAAAGCGCACAAAAAAACGTTTCAAAAGGAAGTTCTGTTACTATCCAAGATGAAACATGACAACATTGTGAAGTTTGTTGGAGCTTGCATAGAACCACAATTGATTATAGTTACCGAACTCGTTGAAGGCGGCACTCTACAGAGGTTCATGCACTCTCGTCCGGGTCCTCTTGACCTAAAGATGTCACTAAGCTTTGCTTTGGATATTTCACGAGCCATGGAGTTTGTGCACTCAAATGGCATCATTCACCGTGATTTAAATCCAAGGAATTTGTTGGTAACCGGTGATCTGAAACATGTGAAATTGGCTGACTTTGGAATTGCAAGAGAAGAAACTAGAGGTGGCATGACCTGTGAGGCTGGCACCTCTAAATGGATGGCTCCTGAGGTAGTGTATAGCCCTGAGCCGCTGAGAGTTGGGGAGAAGAAGGAATATGACCATAAGGCTGATATTTACAGCTTTGCCATAGTATTATGGCAGCTGGTTACGAACGAAGAACCATTCCCTGACGTGCCTAATAGCCTCTTTGTTCCCTATCTTGTTAGCCAAGGTCGGAGACCAATACTTACGAAGACTCCCGACGTGTTTGTCCCAATCGTTGAATCATGTTGGGCACAAGACCCGGATGCGCGTCCGGAATTTAAAGAGATTTCGGTTATGCTGACAAACTTGCTAAGAAGAATGAGCTCAGACAGTAGCATTGGCACAACACTACCGGATGGGGAAGCTTATGAAGGTGAGATGGAGGAATCAGAGAACTCTCCTCTTCTTCAAGAGCATTTTTGCAAGGTGAAGAAACCTAAGGAGAAGAAGAAGAAGAAGAAACTGGTGAAGATGAGATTTCCTTTCTTTAAGAAGTTCAAGGTTTGGTTGTACAACTACAAGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04013 ko04064 ko04140 ko04152 ko04214 ko04310 ko04380 ko04520 ko04620 ko04621 ko04622 ko04624 ko04657 ko04660 ko04668 ko05140 ko05145 ko05162 ko05168 ko05169 ko05418 map04010 map04013 map04064 map04140 map04152 map04214 map04310 map04380 map04520 map04620 map04621 map04622 map04624 map04657 map04660 map04668 map05140 map05145 map05162 map05168 map05169 map05418

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

371

Amino Acids

42.43

Weight (kDa)

8.45

Isoelectric Point (pI)

46.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	38 - 294	1.1e-57	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	38 - 292	1.1e-47	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012226)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50720 AT3G50730 AT5G66710
fragaria_vesca	FvH4_1g13890
malus_domestica	MD15G1266800.v1.1
prunus_persica	Prupe.7G150600_v2.0.a1
pyrus_communis	pycom02g11980 pycom12g17500 pycom17g26870
rosa_chinensis	RchiOBHm_Chr2g0102201
rosa_laevigata	RLG00000017138
rosa_multiflora	Rmu_sc0010937.1_g000009
rosa_roxburghii	Rroxscaffold_2G00140690
rosa_rugosa	Rorug02G0105400
rosa_samantha	Rh2AG153500 Rh2BG159400 Rh2CG158900 Rh2DG159100
rosa_wichuraiana	Rw2G011990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	812
AccB1I	GGYRCC	1 cut(s)	587
AccI	GTMKAC	1 cut(s)	150
AccII	CGCG	1 cut(s)	856
AccIII	TCCGGA	1 cut(s)	859
AciI	CCGC	4 cut(s)	185, 216, 354, 632
AclI	AACGTT	1 cut(s)	242
AclWI	GGATC	2 cut(s)	194, 207
AcsI	RAATTY	2 cut(s)	493, 863
AfaI	GTAC	2 cut(s)	208, 1100
AfiI	CCNNNNNNNGG	1 cut(s)	597
AflIII	ACRYGT	2 cut(s)	520, 807
AgeI	ACCGGT	1 cut(s)	506
AgsI	TTSAA	5 cut(s)	248, 350, 827, 998, 1087
AjiI	CACGTC	2 cut(s)	736, 808
AluBI	AGCT	7 cut(s)	137, 308, 417, 684, 706, 912, 953
AluI	AGCT	7 cut(s)	137, 308, 417, 684, 706, 912, 953
Alw21I	GWGCWC	2 cut(s)	456, 914
Alw26I	GTCTC	1 cut(s)	775
Alw44I	GTGCAC	1 cut(s)	452
AlwI	GGATC	2 cut(s)	194, 207
Aor13HI	TCCGGA	1 cut(s)	859
ApaLI	GTGCAC	1 cut(s)	452
ApeKI	GCWGC	1 cut(s)	703
ApoI	RAATTY	2 cut(s)	493, 863
AsiGI	ACCGGT	1 cut(s)	506
Asp700I	GAANNNNTTC	1 cut(s)	87
AspLEI	GCGC	2 cut(s)	232, 856
AspS9I	GGNCC	1 cut(s)	389
AsuC2I	CCSGG	2 cut(s)	387, 848
AsuHPI	GGTGA	6 cut(s)	199, 464, 521, 974, 1027, 1066
AvaII	GGWCC	1 cut(s)	389
AxyI	CCTNAGG	2 cut(s)	609, 1026
BaeGI	GKGCMC	2 cut(s)	456, 841
BamHI	GGATCC	1 cut(s)	199
BanI	GGYRCC	1 cut(s)	587
BanII	GRGCYC	1 cut(s)	914
BarI	GAAGNNNNNNTAC	2 cut(s)	246, 278
BauI	CACGAG	1 cut(s)	435
BbsI	GAAGAC	1 cut(s)	803
Bbv12I	GWGCWC	2 cut(s)	456, 914
BbvI	GCAGC	1 cut(s)	715
BccI	CCATC	4 cut(s)	152, 595, 938, 961
BcnI	CCSGG	2 cut(s)	387, 848
BcoDI	GTCTC	1 cut(s)	775
BfaI	CTAG	1 cut(s)	561
BfmI	CTRYAG	1 cut(s)	362
BisI	GCNGC	3 cut(s)	355, 632, 704
BlsI	GCNGC	3 cut(s)	356, 633, 705
Bme1390I	CCNGG	2 cut(s)	387, 848
Bme18I	GGWCC	1 cut(s)	389
BmgBI	CACGTC	2 cut(s)	736, 808
BmgT120I	GGNCC	1 cut(s)	389
BmiI	GGNNCC	4 cut(s)	201, 390, 589, 606
BmrFI	CCNGG	2 cut(s)	387, 848
BmsI	GCATC	2 cut(s)	474, 841
BpiI	GAAGAC	1 cut(s)	803
Bpu10I	CCTNAGC	1 cut(s)	627
BpuMI	CCSGG	2 cut(s)	387, 848
BsaBI	GATNNNNATC	1 cut(s)	483
BsaI	GGTCTC	1 cut(s)	775
BsaJI	CCNNGG	4 cut(s)	180, 441, 488, 772
BsaWI	WCCGGW	3 cut(s)	506, 859, 940
BsaXI	ACNNNNNCTCC	2 cut(s)	784, 814
Bsc4I	CCNNNNNNNGG	1 cut(s)	597
Bse118I	RCCGGY	1 cut(s)	506
Bse1I	ACTGG	1 cut(s)	1056
Bse21I	CCTNAGG	2 cut(s)	609, 1026
Bse8I	GATNNNNATC	1 cut(s)	483
BseAI	TCCGGA	1 cut(s)	859
BseDI	CCNNGG	4 cut(s)	180, 441, 488, 772
BseGI	GGATG	3 cut(s)	606, 856, 949
BseJI	GATNNNNATC	1 cut(s)	483
BseLI	CCNNNNNNNGG	1 cut(s)	597
BseMII	CTCAG	4 cut(s)	600, 618, 626, 927
BseNI	ACTGG	1 cut(s)	1056
BseRI	GAGGAG	1 cut(s)	978
BseSI	GKGCMC	2 cut(s)	456, 841
BseXI	GCAGC	1 cut(s)	715
Bsh1236I	CGCG	1 cut(s)	856
Bsh1285I	CGRYCG	1 cut(s)	97
BshNI	GGYRCC	1 cut(s)	587
BshTI	ACCGGT	1 cut(s)	506
BsiEI	CGRYCG	1 cut(s)	97
BsiHKAI	GWGCWC	2 cut(s)	456, 914
BsiSI	CCGG	5 cut(s)	386, 507, 848, 860, 941
BslFI	GGGAC	1 cut(s)	800
BslI	CCNNNNNNNGG	1 cut(s)	597
BsmAI	GTCTC	1 cut(s)	775
BsmFI	GGGAC	1 cut(s)	800
Bso31I	GGTCTC	1 cut(s)	775
Bsp1286I	GDGCHC	3 cut(s)	456, 841, 914
Bsp13I	TCCGGA	1 cut(s)	859
Bsp1407I	TGTACA	1 cut(s)	1098
Bsp143I	GATC	3 cut(s)	192, 199, 511
Bsp19I	CCATGG	1 cut(s)	441
BspACI	CCGC	4 cut(s)	185, 216, 354, 632
BspCNI	CTCAG	4 cut(s)	601, 619, 627, 926
BspEI	TCCGGA	1 cut(s)	859
BspFNI	CGCG	1 cut(s)	856
BspLI	GGNNCC	4 cut(s)	201, 390, 589, 606
BspPI	GGATC	2 cut(s)	194, 207
BspT107I	GGYRCC	1 cut(s)	587
BspTNI	GGTCTC	1 cut(s)	775
BsrFI	RCCGGY	1 cut(s)	506
BsrGI	TGTACA	1 cut(s)	1098
BsrI	ACTGG	1 cut(s)	1056
BssAI	RCCGGY	1 cut(s)	506
BssECI	CCNNGG	4 cut(s)	180, 441, 488, 772
BssMI	GATC	3 cut(s)	192, 199, 511
BssSI	CACGAG	1 cut(s)	435
BssT1I	CCWWGG	3 cut(s)	441, 488, 772
Bst2BI	CACGAG	1 cut(s)	435
Bst4CI	ACNGT	2 cut(s)	476, 920
Bst6I	CTCTTC	1 cut(s)	996
BstAUI	TGTACA	1 cut(s)	1098
BstC8I	GCNNGC	2 cut(s)	310, 586
BstDEI	CTNAG	8 cut(s)	164, 413, 609, 627, 635, 899, 913, 1026
BstDSI	CCRYGG	2 cut(s)	180, 441
BstEII	GGTNACC	1 cut(s)	502
BstF5I	GGATG	3 cut(s)	606, 856, 949
BstFNI	CGCG	1 cut(s)	856
BstHHI	GCGC	2 cut(s)	232, 856
BstKTI	GATC	3 cut(s)	195, 202, 514
BstMAI	GTCTC	1 cut(s)	775
BstMBI	GATC	3 cut(s)	192, 199, 511
BstMCI	CGRYCG	1 cut(s)	97
BstNSI	RCATGY	1 cut(s)	524
BstPI	GGTNACC	1 cut(s)	502
BstSCI	CCNGG	2 cut(s)	385, 846
BstSFI	CTRYAG	1 cut(s)	362
BstSLI	GKGCMC	2 cut(s)	456, 841
BstUI	CGCG	1 cut(s)	856
BstV1I	GCAGC	1 cut(s)	715
BstV2I	GAAGAC	1 cut(s)	803
BstX2I	RGATCY	1 cut(s)	199
BstYI	RGATCY	1 cut(s)	199
Bsu36I	CCTNAGG	2 cut(s)	609, 1026
BtgI	CCRYGG	2 cut(s)	180, 441
BtrI	CACGTC	2 cut(s)	736, 808
BtsCI	GGATG	3 cut(s)	606, 856, 949
Cac8I	GCNNGC	2 cut(s)	310, 586
CfoI	GCGC	2 cut(s)	232, 856
Cfr10I	RCCGGY	1 cut(s)	506
Cfr13I	GGNCC	1 cut(s)	389
CseI	GACGC	1 cut(s)	845
Csp6I	GTAC	2 cut(s)	207, 1099
CspAI	ACCGGT	1 cut(s)	506
CviAII	CATG	8 cut(s)	196, 281, 373, 442, 521, 571, 831, 1113
CviQI	GTAC	2 cut(s)	207, 1099
DdeI	CTNAG	8 cut(s)	164, 413, 609, 627, 635, 899, 913, 1026
DpnI	GATC	3 cut(s)	194, 201, 513
DpnII	GATC	3 cut(s)	192, 199, 511
DraI	TTTAAA	2 cut(s)	483, 868
DrdI	GACNNNNNNGTC	1 cut(s)	812
DseDI	GACNNNNNNGTC	1 cut(s)	812
Eam1104I	CTCTTC	1 cut(s)	996
EarI	CTCTTC	1 cut(s)	996
Ecl136II	GAGCTC	1 cut(s)	912
Eco130I	CCWWGG	3 cut(s)	441, 488, 772
Eco24I	GRGCYC	1 cut(s)	914
Eco31I	GGTCTC	1 cut(s)	775
Eco32I	GATATC	1 cut(s)	6
Eco47I	GGWCC	1 cut(s)	389
Eco53kI	GAGCTC	1 cut(s)	912
Eco81I	CCTNAGG	2 cut(s)	609, 1026
Eco91I	GGTNACC	1 cut(s)	502
EcoICRI	GAGCTC	1 cut(s)	912
EcoO109I	RGGNCCY	1 cut(s)	389
EcoO65I	GGTNACC	1 cut(s)	502
EcoRV	GATATC	1 cut(s)	6
EcoT14I	CCWWGG	3 cut(s)	441, 488, 772
EcoT38I	GRGCYC	1 cut(s)	914
ErhI	CCWWGG	3 cut(s)	441, 488, 772
FaeI	CATG	8 cut(s)	199, 284, 376, 445, 524, 574, 834, 1116
FalI	AAGNNNNNCTT	2 cut(s)	406, 438
FaqI	GGGAC	1 cut(s)	800
FatI	CATG	8 cut(s)	195, 280, 372, 441, 520, 570, 830, 1112
FblI	GTMKAC	1 cut(s)	150
Fnu4HI	GCNGC	3 cut(s)	355, 632, 704
FokI	GGATG	3 cut(s)	613, 863, 956
FriOI	GRGCYC	1 cut(s)	914
Fsp4HI	GCNGC	3 cut(s)	355, 632, 704
FspBI	CTAG	1 cut(s)	561
GlaI	GCGC	2 cut(s)	231, 855
GluI	GCNGC	3 cut(s)	355, 632, 704
HapII	CCGG	5 cut(s)	386, 507, 848, 860, 941
HgaI	GACGC	1 cut(s)	845
HhaI	GCGC	2 cut(s)	232, 856
Hin1II	CATG	8 cut(s)	199, 284, 376, 445, 524, 574, 834, 1116
Hin6I	GCGC	2 cut(s)	230, 854
HinP1I	GCGC	2 cut(s)	230, 854
HindIII	AAGCTT	2 cut(s)	415, 951
HinfI	GANTC	4 cut(s)	44, 799, 827, 974
HpaII	CCGG	5 cut(s)	386, 507, 848, 860, 941
HphI	GGTGA	6 cut(s)	199, 464, 521, 974, 1027, 1066
Hpy166II	GTNNAC	2 cut(s)	151, 454
Hpy188I	TCNGA	7 cut(s)	23, 49, 204, 516, 780, 916, 979
Hpy188III	TCNNGA	8 cut(s)	9, 92, 395, 435, 608, 803, 860, 998
Hpy8I	GTNNAC	2 cut(s)	151, 454
Hpy99I	CGWCG	3 cut(s)	53, 56, 809
HpyAV	CCTTC	5 cut(s)	42, 125, 344, 646, 953
HpyCH4III	ACNGT	2 cut(s)	476, 920
HpyCH4IV	ACGT	3 cut(s)	242, 735, 807
HpyCH4V	TGCA	5 cut(s)	312, 376, 454, 548, 1011
HpyF3I	CTNAG	8 cut(s)	164, 413, 609, 627, 635, 899, 913, 1026
HpySE526I	ACGT	3 cut(s)	242, 735, 807
Hsp92II	CATG	8 cut(s)	199, 284, 376, 445, 524, 574, 834, 1116
HspAI	GCGC	2 cut(s)	230, 854
Kpn2I	TCCGGA	1 cut(s)	859
Kzo9I	GATC	3 cut(s)	192, 199, 511
LmnI	GCTCC	3 cut(s)	134, 305, 610
Lsp1109I	GCAGC	1 cut(s)	715
LweI	GCATC	2 cut(s)	474, 841
MaeI	CTAG	1 cut(s)	561
MaeII	ACGT	3 cut(s)	242, 735, 807
MaeIII	GTNAC	6 cut(s)	220, 261, 334, 408, 502, 709
MalI	GATC	3 cut(s)	194, 201, 513
MboI	GATC	3 cut(s)	192, 199, 511
MfeI	CAATTG	1 cut(s)	323
MflI	RGATCY	1 cut(s)	199
MhlI	GDGCHC	3 cut(s)	456, 841, 914
MluCI	AATT	7 cut(s)	83, 173, 323, 493, 527, 543, 863
MlyI	GAGTC	2 cut(s)	53, 793
MmeI	TCCRAC	3 cut(s)	72, 283, 758
MnlI	CCTC	9 cut(s)	360, 402, 557, 574, 601, 604, 758, 964, 999
MroI	TCCGGA	1 cut(s)	859
MroXI	GAANNNNTTC	1 cut(s)	87
MseI	TTAA	3 cut(s)	482, 867, 1077
MslI	CAYNNNNRTG	1 cut(s)	459
MspA1I	CMGCKG	3 cut(s)	218, 634, 706
MspI	CCGG	5 cut(s)	386, 507, 848, 860, 941
MspR9I	CCNGG	2 cut(s)	387, 848
MunI	CAATTG	1 cut(s)	323
MvnI	CGCG	1 cut(s)	856
NciI	CCSGG	2 cut(s)	387, 848
NcoI	CCATGG	1 cut(s)	441
NdeII	GATC	3 cut(s)	192, 199, 511
NlaIII	CATG	8 cut(s)	199, 284, 376, 445, 524, 574, 834, 1116
NlaIV	GGNNCC	4 cut(s)	201, 390, 589, 606
NmuCI	GTSAC	1 cut(s)	408
NspI	RCATGY	1 cut(s)	524
PciI	ACATGT	1 cut(s)	520
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PdmI	GAANNNNTTC	1 cut(s)	87
PfeI	GAWTC	2 cut(s)	827, 974
PinAI	ACCGGT	1 cut(s)	506
PkrI	GCNGC	3 cut(s)	356, 633, 705
PleI	GAGTC	2 cut(s)	52, 793
PpsI	GAGTC	2 cut(s)	52, 793
PpuMI	RGGWCCY	1 cut(s)	389
PscI	ACATGT	1 cut(s)	520
Psp124BI	GAGCTC	1 cut(s)	914
Psp1406I	AACGTT	1 cut(s)	242
Psp5II	RGGWCCY	1 cut(s)	389
PspEI	GGTNACC	1 cut(s)	502
PspN4I	GGNNCC	4 cut(s)	201, 390, 589, 606
PspPI	GGNCC	1 cut(s)	389
PspPPI	RGGWCCY	1 cut(s)	389
PsuI	RGATCY	1 cut(s)	199
PvuII	CAGCTG	1 cut(s)	706
RsaI	GTAC	2 cut(s)	208, 1100
RsaNI	GTAC	2 cut(s)	207, 1099
RseI	CAYNNNNRTG	1 cut(s)	459
SacI	GAGCTC	1 cut(s)	914
SaqAI	TTAA	3 cut(s)	482, 867, 1077
SatI	GCNGC	3 cut(s)	355, 632, 704
Sau3AI	GATC	3 cut(s)	192, 199, 511
Sau96I	GGNCC	1 cut(s)	389
SchI	GAGTC	2 cut(s)	53, 793
ScrFI	CCNGG	2 cut(s)	387, 848
SduI	GDGCHC	3 cut(s)	456, 841, 914
SfaNI	GCATC	2 cut(s)	474, 841
SfcI	CTRYAG	1 cut(s)	362
SinI	GGWCC	1 cut(s)	389
SmiI	ATTTAAAT	1 cut(s)	483
SmiMI	CAYNNNNRTG	1 cut(s)	459
Sse9I	AATT	7 cut(s)	83, 173, 323, 493, 527, 543, 863
SsiI	CCGC	4 cut(s)	185, 216, 354, 632
SspMI	CTAG	1 cut(s)	561
SstI	GAGCTC	1 cut(s)	914
StyD4I	CCNGG	2 cut(s)	385, 846
StyI	CCWWGG	3 cut(s)	441, 488, 772
SwaI	ATTTAAAT	1 cut(s)	483
TaaI	ACNGT	2 cut(s)	476, 920
TaiI	ACGT	3 cut(s)	245, 738, 810
TaqI	TCGA	2 cut(s)	10, 93
TaqII	GACCGA	1 cut(s)	111
TasI	AATT	7 cut(s)	83, 173, 323, 493, 527, 543, 863
TatI	WGTACW	2 cut(s)	206, 1098
TauI	GCSGC	2 cut(s)	357, 634
TfiI	GAWTC	2 cut(s)	827, 974
Tru1I	TTAA	3 cut(s)	482, 867, 1077
Tru9I	TTAA	3 cut(s)	482, 867, 1077
TseFI	GTSAC	1 cut(s)	408
TseI	GCWGC	1 cut(s)	703
Tsp45I	GTSAC	1 cut(s)	408
TspDTI	ATGAA	3 cut(s)	290, 361, 972
VneI	GTGCAC	1 cut(s)	452
VpaK11BI	GGWCC	1 cut(s)	389
XapI	RAATTY	2 cut(s)	493, 863
XceI	RCATGY	1 cut(s)	524
XmiI	GTMKAC	1 cut(s)	150
XmnI	GAANNNNTTC	1 cut(s)	87
XspI	CTAG	1 cut(s)	561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.