Rorug02G0105400

Serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
8970317 .. 8971196
880 bp
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UTR
Exon/CDS
Intron
Rorug02G0105400.1

Sequence Viewer

Length: 360 bp
ATGGGTCACATGAGCTACAACAGAGTTGGGAATGTTAGGGCAAACAGAGGATTCAGGCTAAACCCAAGAAGATTTTCGGTCTCCAGACTGCGCACGAGGTTCTTGTGCTTCTTCAAGTTCTTGAGCAGATGGAGATGTTCATGCATGAGAAGAGCTAGTACTACAAGTTCTAATGGAAGCAGCAGTAGAAGAGGTTTGGTCAGAAAGAAGTTACAAAACAAGGGTAGTCGAGTTGATTGTGGAAGATTGAGATCATATGGAAGGTCGAATTCTTTCTATGCAGAAGCCATTGCTGATTGCTTGGAGTTCATCAAGAGGTCTTCTATTTCTGTGGATCAGAAAAGTAAAACAACCCAGTAG

Protein Analysis

119

Amino Acids

13.79

Weight (kDa)

11.72

Isoelectric Point (pI)

65.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012226)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 92
AclWI GGATC 1 cut(s) 342
AcsI RAATTY 1 cut(s) 268
AfaI GTAC 1 cut(s) 160
AgsI TTSAA 1 cut(s) 115
AjuI GAANNNNNNNTTGG 2 cut(s) 58, 90
AluBI AGCT 2 cut(s) 15, 155
AluI AGCT 2 cut(s) 15, 155
Alw26I GTCTC 1 cut(s) 85
AlwI GGATC 1 cut(s) 342
ApeKI GCWGC 1 cut(s) 180
ApoI RAATTY 1 cut(s) 268
Asp700I GAANNNNTTC 2 cut(s) 73, 272
AspLEI GCGC 1 cut(s) 93
BarI GAAGNNNNNNTAC 2 cut(s) 142, 174
BauI CACGAG 1 cut(s) 94
BbsI GAAGAC 1 cut(s) 312
BbvI GCAGC 1 cut(s) 192
BccI CCATC 1 cut(s) 123
BcoDI GTCTC 1 cut(s) 85
BfaI CTAG 1 cut(s) 156
BisI GCNGC 1 cut(s) 181
BlsI GCNGC 1 cut(s) 182
BmcAI AGTACT 1 cut(s) 160
BmrI ACTGGG 1 cut(s) 349
BmuI ACTGGG 1 cut(s) 349
BpiI GAAGAC 1 cut(s) 312
BpmI CTGGAG 1 cut(s) 67
BpuEI CTTGAG 1 cut(s) 142
BsaBI GATNNNNATC 1 cut(s) 250
BsaI GGTCTC 1 cut(s) 85
Bse1I ACTGG 1 cut(s) 355
Bse3DI GCAATG 1 cut(s) 288
Bse8I GATNNNNATC 1 cut(s) 250
BseJI GATNNNNATC 1 cut(s) 250
BseMI GCAATG 1 cut(s) 288
BseNI ACTGG 1 cut(s) 355
BseXI GCAGC 1 cut(s) 192
BsmAI GTCTC 1 cut(s) 85
Bso31I GGTCTC 1 cut(s) 85
Bsp143I GATC 2 cut(s) 251, 334
BspPI GGATC 1 cut(s) 342
BspQI GCTCTTC 1 cut(s) 145
BspTNI GGTCTC 1 cut(s) 85
BsrDI GCAATG 1 cut(s) 288
BsrI ACTGG 1 cut(s) 355
BssMI GATC 2 cut(s) 251, 334
BssSI CACGAG 1 cut(s) 94
Bst2BI CACGAG 1 cut(s) 94
Bst6I CTCTTC 2 cut(s) 145, 184
BstHHI GCGC 1 cut(s) 93
BstKTI GATC 2 cut(s) 254, 337
BstMAI GTCTC 1 cut(s) 85
BstMBI GATC 2 cut(s) 251, 334
BstV1I GCAGC 1 cut(s) 192
BstV2I GAAGAC 1 cut(s) 312
CfoI GCGC 1 cut(s) 93
Csp6I GTAC 1 cut(s) 159
CviAII CATG 3 cut(s) 10, 141, 145
CviJI RGCY 4 cut(s) 15, 58, 155, 287
CviKI_1 RGCY 4 cut(s) 15, 58, 155, 287
CviQI GTAC 1 cut(s) 159
DpnI GATC 2 cut(s) 253, 336
DpnII GATC 2 cut(s) 251, 334
Eam1104I CTCTTC 2 cut(s) 145, 184
EarI CTCTTC 2 cut(s) 145, 184
Eco31I GGTCTC 1 cut(s) 85
EcoRI GAATTC 1 cut(s) 268
EcoT22I ATGCAT 1 cut(s) 146
FaeI CATG 3 cut(s) 13, 144, 148
FaiI YATR 6 cut(s) 11, 142, 146, 256, 258, 279
FatI CATG 3 cut(s) 9, 140, 144
FauNDI CATATG 1 cut(s) 256
Fnu4HI GCNGC 1 cut(s) 181
Fsp4HI GCNGC 1 cut(s) 181
FspBI CTAG 1 cut(s) 156
FspI TGCGCA 1 cut(s) 92
GlaI GCGC 1 cut(s) 92
GluI GCNGC 1 cut(s) 181
GsuI CTGGAG 1 cut(s) 67
HhaI GCGC 1 cut(s) 93
Hin1II CATG 3 cut(s) 13, 144, 148
Hin6I GCGC 1 cut(s) 91
HinP1I GCGC 1 cut(s) 91
HinfI GANTC 1 cut(s) 51
Hpy188I TCNGA 2 cut(s) 203, 339
Hpy188III TCNNGA 3 cut(s) 84, 121, 313
HpyAV CCTTC 1 cut(s) 255
HpyCH4V TGCA 2 cut(s) 144, 281
Hsp92II CATG 3 cut(s) 13, 144, 148
HspAI GCGC 1 cut(s) 91
Kzo9I GATC 2 cut(s) 251, 334
LguI GCTCTTC 1 cut(s) 145
LpnPI CCDG 2 cut(s) 40, 97
Lsp1109I GCAGC 1 cut(s) 192
MaeI CTAG 1 cut(s) 156
MaeIII GTNAC 2 cut(s) 5, 210
MalI GATC 2 cut(s) 253, 336
MboI GATC 2 cut(s) 251, 334
MboII GAAGA 6 cut(s) 81, 103, 162, 201, 255, 312
MluCI AATT 1 cut(s) 268
MnlI CCTC 4 cut(s) 41, 90, 185, 309
Mph1103I ATGCAT 1 cut(s) 146
MroXI GAANNNNTTC 2 cut(s) 73, 272
NdeI CATATG 1 cut(s) 256
NdeII GATC 2 cut(s) 251, 334
NlaIII CATG 3 cut(s) 13, 144, 148
NmuCI GTSAC 1 cut(s) 5
NsbI TGCGCA 1 cut(s) 92
NsiI ATGCAT 1 cut(s) 146
PciSI GCTCTTC 1 cut(s) 145
PdmI GAANNNNTTC 2 cut(s) 73, 272
PfeI GAWTC 1 cut(s) 51
PkrI GCNGC 1 cut(s) 182
PsrI GAACNNNNNNTAC 2 cut(s) 151, 183
RsaI GTAC 1 cut(s) 160
RsaNI GTAC 1 cut(s) 159
SapI GCTCTTC 1 cut(s) 145
SatI GCNGC 1 cut(s) 181
Sau3AI GATC 2 cut(s) 251, 334
ScaI AGTACT 1 cut(s) 160
SetI ASST 6 cut(s) 17, 101, 157, 196, 266, 320
SmlI CTYRAG 1 cut(s) 121
SmoI CTYRAG 1 cut(s) 121
Sse9I AATT 1 cut(s) 268
SspMI CTAG 1 cut(s) 156
TaqI TCGA 2 cut(s) 229, 266
TaqII GACCGA 1 cut(s) 67
TasI AATT 1 cut(s) 268
TatI WGTACW 1 cut(s) 158
TfiI GAWTC 1 cut(s) 51
TseFI GTSAC 1 cut(s) 5
TseI GCWGC 1 cut(s) 180
Tsp45I GTSAC 1 cut(s) 5
TspDTI ATGAA 2 cut(s) 129, 298
XapI RAATTY 1 cut(s) 268
XmnI GAANNNNTTC 2 cut(s) 73, 272
XspI CTAG 1 cut(s) 156
ZrmI AGTACT 1 cut(s) 160
Zsp2I ATGCAT 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.