Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0012226

Physical Location & Seq

Genomic Coordinates Reverse (-)

7635158 .. 7639856

Gene Structure 4699 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g13890.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGGCGGGTTCAGGCGTCTTCACTGTCACCGATAACGACCTCTTCGACTACTTCCCCGAGAACAACGCCGGAAAAGACGATGAGGGTTGTGTTCTTTCAGCTAAAGGCAGCAACTTTGTGTTCAATTTGGACCAGAGTCTGCTCATCGACGCAAGCTGTGTTGTGATTGGTCAGGTGCTCGGAGAAGGGCCGCAGTCGATTGTCTATGAAGGATTGTACAATTCCAAGCCTGTCGCCGTGAAAATCATACAGCCAGACGAAACAGGTTTAATCAATCCTGAACGCAAGGAAAAGTTTCAGAGGGAGGTGACTTTACTGTCAAAGGCGAAACATGACAACATTGTGAAGTTTATCGGTGCATCTGTGGAACCAATTATGATGATAGTTACTGAGCTTATGAGAGGTGGTACAATTCAGAAGTACTTGTGGGGCACCCGCCCTGTAGTTCTGGACTTGAAGCTTTCAATAAGTTTTGCTTTGGATATATGTCGAGCTATGGAATACTTGCATGCAAATGGCATCATACACCGTGACTTGAAGCCAAGCAATCTACTTCTTTCAGAAAACAAGAAGCAAGTGAAGCTGGCTGACTTTGGGCTTGCTAGAGAGCAGATAGAAGGTGCAATGACTAGTGAGGCTGGAACATACCGGTGGATGGCTCCTGAGTTATTCAGCATAGAACCAGTTCCGAAAGGTGCAATGAAAGAGTATGACCACAAGGCTGACGTGTACAGCTTCTCAATAGTTCTGTGGGAGCTGCTCACGAACAAAACTCCATTCAAGGGAAGAAATAACATAATGGTGGCCTATGCTACAGCTAATAATGTAAGACCTAACCTGGAGGACATCCCCAAGGAGATTACCCCTCTGCTGAAGTCCTGCTGGGCAGAGGACCCCAAGGACCGACCAGAATTTATGGAAGTCACAGATTTTCTCTCCAAATTCTACCAGGAACATTGCTTAAAGGAGACCAAACCTCCTCCTAAGGCCATTGAGACTGAAAGTAATGAGAGGAACATTGAGGAACATAATGAGAAGAGCATTAAGGAAGAAGAATCGCTGAGTACCTCCAAACCACATGTGAATGAGAAACTTGAAGAAGAGAAATGGGTTAAAAGGCGCAAGAAGAGTTGGTCATCTAGTTGGTTCTGTTTCTCTTGCTTAGCTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04013 ko04064 ko04140 ko04152 ko04214 ko04310 ko04380 ko04520 ko04620 ko04621 ko04622 ko04624 ko04657 ko04660 ko04668 ko05140 ko05145 ko05162 ko05168 ko05169 ko05418 map04010 map04013 map04064 map04140 map04152 map04214 map04310 map04380 map04520 map04620 map04621 map04622 map04624 map04657 map04660 map04668 map05140 map05145 map05162 map05168 map05169 map05418

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

391

Amino Acids

44.24

Weight (kDa)

5.57

Isoelectric Point (pI)

43.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	56 - 311	1.6e-55	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	57 - 309	8e-53	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012226)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50720 AT3G50730 AT5G66710
fragaria_vesca	FvH4_1g13890
malus_domestica	MD15G1266800.v1.1
prunus_persica	Prupe.7G150600_v2.0.a1
pyrus_communis	pycom02g11980 pycom12g17500 pycom17g26870
rosa_chinensis	RchiOBHm_Chr2g0102201
rosa_laevigata	RLG00000017138
rosa_multiflora	Rmu_sc0010937.1_g000009
rosa_roxburghii	Rroxscaffold_2G00140690
rosa_rugosa	Rorug02G0105400
rosa_samantha	Rh2AG153500 Rh2BG159400 Rh2CG158900 Rh2DG159100
rosa_wichuraiana	Rw2G011990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	316
AccB1I	GGYRCC	1 cut(s)	431
AciI	CCGC	3 cut(s)	5, 191, 436
AcsI	RAATTY	2 cut(s)	911, 941
AcuI	CTGAAG	1 cut(s)	893
AcyI	GRCGYC	1 cut(s)	15
AfaI	GTAC	5 cut(s)	218, 409, 422, 731, 1066
AfiI	CCNNNNNNNGG	2 cut(s)	655, 782
AflIII	ACRYGT	2 cut(s)	726, 1078
AgeI	ACCGGT	1 cut(s)	648
AgsI	TTSAA	6 cut(s)	124, 457, 465, 538, 781, 1097
AhlI	ACTAGT	1 cut(s)	629
AjiI	CACGTC	1 cut(s)	727
AjnI	CCWGG	2 cut(s)	837, 948
Alw21I	GWGCWC	1 cut(s)	180
Alw26I	GTCTC	2 cut(s)	962, 989
AlwNI	CAGNNNCTG	1 cut(s)	139
Ama87I	CYCGRG	1 cut(s)	56
AoxI	GGCC	3 cut(s)	188, 804, 987
ApeKI	GCWGC	2 cut(s)	108, 757
ApoI	RAATTY	2 cut(s)	911, 941
AsiGI	ACCGGT	1 cut(s)	648
Asp700I	GAANNNNTTC	2 cut(s)	294, 684
AspLEI	GCGC	1 cut(s)	1122
AspS9I	GGNCC	4 cut(s)	130, 188, 892, 901
AsuHPI	GGTGA	2 cut(s)	19, 319
AvaI	CYCGRG	1 cut(s)	56
AvaII	GGWCC	3 cut(s)	130, 892, 901
AxyI	CCTNAGG	1 cut(s)	984
BaeGI	GKGCMC	1 cut(s)	434
BanI	GGYRCC	1 cut(s)	431
BbsI	GAAGAC	1 cut(s)	10
Bbv12I	GWGCWC	1 cut(s)	180
BbvI	GCAGC	2 cut(s)	120, 744
BccI	CCATC	1 cut(s)	649
BceAI	ACGGC	1 cut(s)	221
BciT130I	CCWGG	2 cut(s)	839, 950
BcoDI	GTCTC	2 cut(s)	962, 989
BcuI	ACTAGT	1 cut(s)	629
BfaI	CTAG	3 cut(s)	603, 630, 1140
BfmI	CTRYAG	2 cut(s)	441, 813
BisI	GCNGC	3 cut(s)	109, 191, 758
BlpI	GCTNAGC	1 cut(s)	1162
BlsI	GCNGC	3 cut(s)	110, 192, 759
BmcAI	AGTACT	1 cut(s)	422
Bme1390I	CCNGG	2 cut(s)	839, 950
Bme18I	GGWCC	3 cut(s)	130, 892, 901
BmeT110I	CYCGRG	1 cut(s)	56
BmgBI	CACGTC	1 cut(s)	727
BmgT120I	GGNCC	4 cut(s)	130, 188, 892, 901
BmiI	GGNNCC	4 cut(s)	369, 433, 660, 894
BmrFI	CCNGG	2 cut(s)	839, 950
BmsI	GCATC	2 cut(s)	368, 528
BoxI	GACNNNNGTC	1 cut(s)	135
BpiI	GAAGAC	1 cut(s)	10
BpmI	CTGGAG	1 cut(s)	860
Bpu1102I	GCTNAGC	1 cut(s)	1162
BsaHI	GRCGYC	1 cut(s)	15
BsaI	GGTCTC	1 cut(s)	962
BsaJI	CCNNGG	2 cut(s)	852, 897
BsaWI	WCCGGW	1 cut(s)	648
BsaXI	ACNNNNNCTCC	2 cut(s)	961, 991
Bsc4I	CCNNNNNNNGG	2 cut(s)	655, 782
Bse118I	RCCGGY	1 cut(s)	648
Bse1I	ACTGG	1 cut(s)	683
Bse21I	CCTNAGG	1 cut(s)	984
Bse3DI	GCAATG	3 cut(s)	630, 705, 955
BseBI	CCWGG	2 cut(s)	839, 950
BseDI	CCNNGG	2 cut(s)	852, 897
BseGI	GGATG	2 cut(s)	660, 846
BseLI	CCNNNNNNNGG	2 cut(s)	655, 782
BseMI	GCAATG	3 cut(s)	630, 705, 955
BseMII	CTCAG	3 cut(s)	381, 654, 1052
BseNI	ACTGG	1 cut(s)	683
BseRI	GAGGAG	1 cut(s)	969
BseSI	GKGCMC	1 cut(s)	434
BseXI	GCAGC	2 cut(s)	120, 744
BseYI	CCCAGC	1 cut(s)	882
BshFI	GGCC	3 cut(s)	190, 806, 989
BshNI	GGYRCC	1 cut(s)	431
BshTI	ACCGGT	1 cut(s)	648
BsiHKAI	GWGCWC	1 cut(s)	180
BsiHKCI	CYCGRG	1 cut(s)	56
BsiSI	CCGG	2 cut(s)	69, 649
BslI	CCNNNNNNNGG	2 cut(s)	655, 782
BsmAI	GTCTC	2 cut(s)	962, 989
BsnI	GGCC	3 cut(s)	190, 806, 989
Bso31I	GGTCTC	1 cut(s)	962
BsoBI	CYCGRG	1 cut(s)	56
Bsp1286I	GDGCHC	2 cut(s)	180, 434
Bsp1407I	TGTACA	2 cut(s)	216, 729
Bsp1720I	GCTNAGC	1 cut(s)	1162
BspACI	CCGC	3 cut(s)	5, 191, 436
BspANI	GGCC	3 cut(s)	190, 806, 989
BspCNI	CTCAG	3 cut(s)	382, 655, 1053
BspLI	GGNNCC	4 cut(s)	369, 433, 660, 894
BspQI	GCTCTTC	1 cut(s)	1031
BspT107I	GGYRCC	1 cut(s)	431
BspTNI	GGTCTC	1 cut(s)	962
BsrDI	GCAATG	3 cut(s)	630, 705, 955
BsrFI	RCCGGY	1 cut(s)	648
BsrGI	TGTACA	2 cut(s)	216, 729
BsrI	ACTGG	1 cut(s)	683
BssAI	RCCGGY	1 cut(s)	648
BssECI	CCNNGG	2 cut(s)	852, 897
BssNI	GRCGYC	1 cut(s)	15
BssT1I	CCWWGG	2 cut(s)	852, 897
Bst2UI	CCWGG	2 cut(s)	839, 950
Bst4CI	ACNGT	3 cut(s)	25, 318, 530
Bst6I	CTCTTC	4 cut(s)	47, 1031, 1095, 1121
BstACI	GRCGYC	1 cut(s)	15
BstAUI	TGTACA	2 cut(s)	216, 729
BstC8I	GCNNGC	4 cut(s)	154, 510, 585, 600
BstDEI	CTNAG	5 cut(s)	390, 663, 984, 1061, 1162
BstF5I	GGATG	2 cut(s)	660, 846
BstHHI	GCGC	1 cut(s)	1122
BstMAI	GTCTC	2 cut(s)	962, 989
BstMWI	GCNNNNNNNGC	1 cut(s)	580
BstNI	CCWGG	2 cut(s)	839, 950
BstNSI	RCATGY	2 cut(s)	512, 1082
BstPAI	GACNNNNGTC	1 cut(s)	135
BstSCI	CCNGG	2 cut(s)	837, 948
BstSFI	CTRYAG	2 cut(s)	441, 813
BstSLI	GKGCMC	1 cut(s)	434
BstV1I	GCAGC	2 cut(s)	120, 744
BstV2I	GAAGAC	1 cut(s)	10
Bsu36I	CCTNAGG	1 cut(s)	984
BsuRI	GGCC	3 cut(s)	190, 806, 989
BtrI	CACGTC	1 cut(s)	727
BtsCI	GGATG	2 cut(s)	660, 846
BtsIMutI	CAGTG	1 cut(s)	21
Cac8I	GCNNGC	4 cut(s)	154, 510, 585, 600
CaiI	CAGNNNCTG	1 cut(s)	139
CfoI	GCGC	1 cut(s)	1122
Cfr10I	RCCGGY	1 cut(s)	648
Cfr13I	GGNCC	4 cut(s)	130, 188, 892, 901
CseI	GACGC	2 cut(s)	4, 158
Csp6I	GTAC	5 cut(s)	217, 408, 421, 730, 1065
CspAI	ACCGGT	1 cut(s)	648
CviAII	CATG	3 cut(s)	332, 509, 1079
CviQI	GTAC	5 cut(s)	217, 408, 421, 730, 1065
DdeI	CTNAG	5 cut(s)	390, 663, 984, 1061, 1162
DrdI	GACNNNNNNGTC	1 cut(s)	316
DseDI	GACNNNNNNGTC	1 cut(s)	316
Eam1104I	CTCTTC	4 cut(s)	47, 1031, 1095, 1121
EarI	CTCTTC	4 cut(s)	47, 1031, 1095, 1121
Eco130I	CCWWGG	2 cut(s)	852, 897
Eco31I	GGTCTC	1 cut(s)	962
Eco47I	GGWCC	3 cut(s)	130, 892, 901
Eco57I	CTGAAG	1 cut(s)	893
Eco81I	CCTNAGG	1 cut(s)	984
Eco88I	CYCGRG	1 cut(s)	56
EcoO109I	RGGNCCY	1 cut(s)	892
EcoRII	CCWGG	2 cut(s)	837, 948
EcoT14I	CCWWGG	2 cut(s)	852, 897
ErhI	CCWWGG	2 cut(s)	852, 897
FaeI	CATG	3 cut(s)	335, 512, 1082
FalI	AAGNNNNNCTT	2 cut(s)	460, 492
FatI	CATG	3 cut(s)	331, 508, 1078
FauI	CCCGC	1 cut(s)	443
Fnu4HI	GCNGC	3 cut(s)	109, 191, 758
FokI	GGATG	2 cut(s)	667, 833
Fsp4HI	GCNGC	3 cut(s)	109, 191, 758
FspBI	CTAG	3 cut(s)	603, 630, 1140
GlaI	GCGC	1 cut(s)	1121
GluI	GCNGC	3 cut(s)	109, 191, 758
GsaI	CCCAGC	1 cut(s)	886
GsuI	CTGGAG	1 cut(s)	860
HaeIII	GGCC	3 cut(s)	190, 806, 989
HapII	CCGG	2 cut(s)	69, 649
HgaI	GACGC	2 cut(s)	4, 158
HhaI	GCGC	1 cut(s)	1122
Hin1I	GRCGYC	1 cut(s)	15
Hin1II	CATG	3 cut(s)	335, 512, 1082
Hin6I	GCGC	1 cut(s)	1120
HinP1I	GCGC	1 cut(s)	1120
HindIII	AAGCTT	1 cut(s)	458
HinfI	GANTC	2 cut(s)	136, 1055
HpaII	CCGG	2 cut(s)	69, 649
HphI	GGTGA	2 cut(s)	19, 319
Hpy166II	GTNNAC	1 cut(s)	730
Hpy188I	TCNGA	5 cut(s)	182, 300, 417, 562, 690
Hpy188III	TCNNGA	4 cut(s)	278, 449, 662, 763
Hpy8I	GTNNAC	1 cut(s)	730
Hpy99I	CGWCG	1 cut(s)	152
HpyAV	CCTTC	3 cut(s)	179, 203, 611
HpyCH4III	ACNGT	3 cut(s)	25, 318, 530
HpyCH4IV	ACGT	1 cut(s)	726
HpyCH4V	TGCA	5 cut(s)	359, 508, 512, 623, 698
HpyF10VI	GCNNNNNNNGC	1 cut(s)	580
HpyF3I	CTNAG	5 cut(s)	390, 663, 984, 1061, 1162
HpySE526I	ACGT	1 cut(s)	726
Hsp92I	GRCGYC	1 cut(s)	15
Hsp92II	CATG	3 cut(s)	335, 512, 1082
HspAI	GCGC	1 cut(s)	1120
LguI	GCTCTTC	1 cut(s)	1031
LmnI	GCTCC	2 cut(s)	664, 754
Lsp1109I	GCAGC	2 cut(s)	120, 744
LweI	GCATC	2 cut(s)	368, 528
MaeI	CTAG	3 cut(s)	603, 630, 1140
MaeII	ACGT	1 cut(s)	726
MaeIII	GTNAC	5 cut(s)	25, 307, 385, 530, 922
MboII	GAAGA	9 cut(s)	10, 34, 798, 1048, 1061, 1064, 1109, 1112, 1138
MhlI	GDGCHC	2 cut(s)	180, 434
MluCI	AATT	6 cut(s)	124, 220, 372, 411, 911, 941
MlyI	GAGTC	1 cut(s)	145
MroXI	GAANNNNTTC	2 cut(s)	294, 684
MseI	TTAA	4 cut(s)	269, 962, 1044, 1113
MslI	CAYNNNNRTG	4 cut(s)	513, 649, 800, 1083
MspI	CCGG	2 cut(s)	69, 649
MspR9I	CCNGG	2 cut(s)	839, 950
MvaI	CCWGG	2 cut(s)	839, 950
MwoI	GCNNNNNNNGC	1 cut(s)	580
NlaIII	CATG	3 cut(s)	335, 512, 1082
NlaIV	GGNNCC	4 cut(s)	369, 433, 660, 894
NmuCI	GTSAC	4 cut(s)	25, 307, 530, 922
NspI	RCATGY	2 cut(s)	512, 1082
PaeI	GCATGC	1 cut(s)	512
PciI	ACATGT	1 cut(s)	1078
PciSI	GCTCTTC	1 cut(s)	1031
PcsI	WCGNNNNNNNCGW	1 cut(s)	42
PdmI	GAANNNNTTC	2 cut(s)	294, 684
PfeI	GAWTC	1 cut(s)	1055
PinAI	ACCGGT	1 cut(s)	648
PkrI	GCNGC	3 cut(s)	110, 192, 759
PleI	GAGTC	1 cut(s)	144
PpsI	GAGTC	1 cut(s)	144
PpuMI	RGGWCCY	1 cut(s)	892
PscI	ACATGT	1 cut(s)	1078
PshAI	GACNNNNGTC	1 cut(s)	135
Psp5II	RGGWCCY	1 cut(s)	892
Psp6I	CCWGG	2 cut(s)	837, 948
PspFI	CCCAGC	1 cut(s)	882
PspGI	CCWGG	2 cut(s)	837, 948
PspN4I	GGNNCC	4 cut(s)	369, 433, 660, 894
PspPI	GGNCC	4 cut(s)	130, 188, 892, 901
PspPPI	RGGWCCY	1 cut(s)	892
PstNI	CAGNNNCTG	1 cut(s)	139
RsaI	GTAC	5 cut(s)	218, 409, 422, 731, 1066
RsaNI	GTAC	5 cut(s)	217, 408, 421, 730, 1065
RseI	CAYNNNNRTG	4 cut(s)	513, 649, 800, 1083
SapI	GCTCTTC	1 cut(s)	1031
SaqAI	TTAA	4 cut(s)	269, 962, 1044, 1113
SatI	GCNGC	3 cut(s)	109, 191, 758
Sau96I	GGNCC	4 cut(s)	130, 188, 892, 901
ScaI	AGTACT	1 cut(s)	422
SchI	GAGTC	1 cut(s)	145
ScrFI	CCNGG	2 cut(s)	839, 950
SduI	GDGCHC	2 cut(s)	180, 434
SfaNI	GCATC	2 cut(s)	368, 528
SfcI	CTRYAG	2 cut(s)	441, 813
SinI	GGWCC	3 cut(s)	130, 892, 901
SmiMI	CAYNNNNRTG	4 cut(s)	513, 649, 800, 1083
SpeI	ACTAGT	1 cut(s)	629
SphI	GCATGC	1 cut(s)	512
Sse9I	AATT	6 cut(s)	124, 220, 372, 411, 911, 941
SsiI	CCGC	3 cut(s)	5, 191, 436
SspMI	CTAG	3 cut(s)	603, 630, 1140
StyD4I	CCNGG	2 cut(s)	837, 948
StyI	CCWWGG	2 cut(s)	852, 897
TaaI	ACNGT	3 cut(s)	25, 318, 530
TaiI	ACGT	1 cut(s)	729
TaqI	TCGA	4 cut(s)	45, 147, 197, 490
TaqII	GACCGA	1 cut(s)	918
TasI	AATT	6 cut(s)	124, 220, 372, 411, 911, 941
TatI	WGTACW	3 cut(s)	216, 420, 729
TauI	GCSGC	1 cut(s)	193
TfiI	GAWTC	1 cut(s)	1055
Tru1I	TTAA	4 cut(s)	269, 962, 1044, 1113
Tru9I	TTAA	4 cut(s)	269, 962, 1044, 1113
TscAI	CASTG	1 cut(s)	28
TseFI	GTSAC	4 cut(s)	25, 307, 530, 922
TseI	GCWGC	2 cut(s)	108, 757
Tsp45I	GTSAC	4 cut(s)	25, 307, 530, 922
TspDTI	ATGAA	2 cut(s)	222, 716
TspRI	CASTG	1 cut(s)	28
VpaK11BI	GGWCC	3 cut(s)	130, 892, 901
XapI	RAATTY	2 cut(s)	911, 941
XceI	RCATGY	2 cut(s)	512, 1082
XmnI	GAANNNNTTC	2 cut(s)	294, 684
XspI	CTAG	3 cut(s)	603, 630, 1140
ZrmI	AGTACT	1 cut(s)	422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.