AT3G50845

MIP18 family protein At1g68310-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0011777
Physical Location & Seq
Reverse (-)
18899930 .. 18901209
1280 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G50845.1

Sequence Viewer

Length: 465 bp
ATGACTCTGGGACTGATAAACGCGAATCCAGTGGTGCAAGCTAAGAAGGAAGGGCTTGTTCGTAGAGAAGATCAATATAGAGATGATGGTGTTGATCCTCTTGAAATATATGATTATGTAAGAGATATAAGAGATCCAGAACACCCTTATACTTTGGAGCAGCTAAGGGTTGTCTCTGAAGAATCTGTTACTGTCGATGACAAGCTCGATCGCATCCTGATAACGTTTACACCGACGATTCAGCATTGTAGTATGGCAAATATAATTGGTCTGTGTCTGAGAGCTAAGCTTAAAGAATGTTTGCAACTTCATTACAAGGTTGATATCAGAGTGTCTCCGGGTTCTCACGCTGATGAAGTTTCAGTTAACAAACAACTGAATGATAAAGAAAGAGTGGTGGCTGCATTGGAGAATCCTAATCTCCGTCAGCTCGTGGATGAGTGTATCTACTCCGATGAGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006790 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016226 GO:0022607 GO:0031163 GO:0044085 GO:0044237 GO:0051186 GO:0071840
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FeS_assembly_P

Protein Analysis

154

Amino Acids

17.64

Weight (kDa)

4.9

Isoelectric Point (pI)

44.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FeS_assembly_P PF01883 36 - 98 4.1e-06 Iron-sulfur cluster assembly protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011777)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G50845
fragaria_vesca FvH4_1g13320 FvH4_1g13320 FvH4_1g13320
malus_domestica MD02G1148000.v1.1 MD11G1309300.v1.1
prunus_persica Prupe.7G154400_v2.0.a1 Prupe.7G154400_v2.0.a1
pyrus_communis pycom02g11670
rosa_chinensis RchiOBHm_Chr2g0101601
rosa_laevigata RLG00000017093
rosa_multiflora Rmu_sc0006153.1_g000005
rosa_roxburghii Rroxscaffold_2G00141160
rosa_rugosa Rorug02G0101000
rosa_samantha Rh2AG148300 Rh2BG153700 Rh2CG154100 Rh2DG154100
rosa_wichuraiana Rw2G011570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 23
AclI AACGTT 1 cut(s) 224
AclWI GGATC 2 cut(s) 89, 128
AcuI CTGAAG 1 cut(s) 198
AgsI TTSAA 1 cut(s) 104
AluBI AGCT 6 cut(s) 41, 163, 205, 284, 289, 430
AluI AGCT 6 cut(s) 41, 163, 205, 284, 289, 430
Alw26I GTCTC 2 cut(s) 178, 339
AlwI GGATC 2 cut(s) 89, 128
ApeKI GCWGC 2 cut(s) 160, 401
AsuC2I CCSGG 1 cut(s) 339
BauI CACGAG 1 cut(s) 431
BbvI GCAGC 2 cut(s) 172, 388
BccI CCATC 1 cut(s) 80
BcnI CCSGG 1 cut(s) 339
BcoDI GTCTC 2 cut(s) 178, 339
BisI GCNGC 2 cut(s) 161, 402
BlpI GCTNAGC 1 cut(s) 285
BlsI GCNGC 2 cut(s) 162, 403
Bme1390I CCNGG 1 cut(s) 339
BmrFI CCNGG 1 cut(s) 339
BmsI GCATC 1 cut(s) 222
Bpu10I CCTNAGC 1 cut(s) 164
Bpu1102I GCTNAGC 1 cut(s) 285
BpuMI CCSGG 1 cut(s) 339
Bse1I ACTGG 1 cut(s) 29
BseGI GGATG 2 cut(s) 213, 442
BseMII CTCAG 1 cut(s) 269
BseNI ACTGG 1 cut(s) 29
BseXI GCAGC 2 cut(s) 172, 388
Bsh1236I CGCG 1 cut(s) 23
Bsh1285I CGRYCG 1 cut(s) 211
BsiEI CGRYCG 1 cut(s) 211
BsiSI CCGG 1 cut(s) 338
BslFI GGGAC 1 cut(s) 24
BsmAI GTCTC 2 cut(s) 178, 339
BsmFI GGGAC 1 cut(s) 24
Bsp143I GATC 4 cut(s) 70, 94, 133, 208
Bsp1720I GCTNAGC 1 cut(s) 285
BspCNI CTCAG 1 cut(s) 270
BspFNI CGCG 1 cut(s) 23
BspPI GGATC 2 cut(s) 89, 128
BsrI ACTGG 1 cut(s) 29
BssMI GATC 4 cut(s) 70, 94, 133, 208
BssSI CACGAG 1 cut(s) 431
Bst2BI CACGAG 1 cut(s) 431
Bst4CI ACNGT 1 cut(s) 193
BstC8I GCNNGC 1 cut(s) 39
BstDEI CTNAG 4 cut(s) 42, 164, 278, 285
BstF5I GGATG 2 cut(s) 213, 442
BstFNI CGCG 1 cut(s) 23
BstKTI GATC 4 cut(s) 73, 97, 136, 211
BstMAI GTCTC 2 cut(s) 178, 339
BstMBI GATC 4 cut(s) 70, 94, 133, 208
BstMCI CGRYCG 1 cut(s) 211
BstSCI CCNGG 1 cut(s) 337
BstUI CGCG 1 cut(s) 23
BstV1I GCAGC 2 cut(s) 172, 388
BstX2I RGATCY 1 cut(s) 133
BstYI RGATCY 1 cut(s) 133
BtsCI GGATG 2 cut(s) 213, 442
BtsIMutI CAGTG 1 cut(s) 36
Cac8I GCNNGC 1 cut(s) 39
CviJI RGCY 8 cut(s) 41, 55, 163, 205, 284, 289, 401, 430
CviKI_1 RGCY 8 cut(s) 41, 55, 163, 205, 284, 289, 401, 430
DdeI CTNAG 4 cut(s) 42, 164, 278, 285
DpnI GATC 4 cut(s) 72, 96, 135, 210
DpnII GATC 4 cut(s) 70, 94, 133, 208
Eco32I GATATC 1 cut(s) 325
Eco57I CTGAAG 1 cut(s) 198
EcoRV GATATC 1 cut(s) 325
FaiI YATR 9 cut(s) 78, 109, 111, 117, 128, 150, 254, 263, 463
FaqI GGGAC 1 cut(s) 24
Fnu4HI GCNGC 2 cut(s) 161, 402
FokI GGATG 2 cut(s) 200, 449
Fsp4HI GCNGC 2 cut(s) 161, 402
GluI GCNGC 2 cut(s) 161, 402
HapII CCGG 1 cut(s) 338
HincII GTYRAC 1 cut(s) 367
HindII GTYRAC 1 cut(s) 367
HindIII AAGCTT 1 cut(s) 287
HinfI GANTC 5 cut(s) 4, 25, 182, 238, 412
HpaI GTTAAC 1 cut(s) 367
HpaII CCGG 1 cut(s) 338
Hpy166II GTNNAC 2 cut(s) 228, 367
Hpy188I TCNGA 4 cut(s) 178, 279, 329, 454
Hpy188III TCNNGA 3 cut(s) 101, 137, 217
Hpy8I GTNNAC 2 cut(s) 228, 367
Hpy99I CGWCG 1 cut(s) 238
HpyAV CCTTC 2 cut(s) 40, 44
HpyCH4III ACNGT 1 cut(s) 193
HpyCH4IV ACGT 1 cut(s) 224
HpyCH4V TGCA 3 cut(s) 37, 304, 404
HpyF3I CTNAG 4 cut(s) 42, 164, 278, 285
HpySE526I ACGT 1 cut(s) 224
KspAI GTTAAC 1 cut(s) 367
Kzo9I GATC 4 cut(s) 70, 94, 133, 208
LmnI GCTCC 1 cut(s) 157
LpnPI CCDG 4 cut(s) 42, 150, 230, 351
Lsp1109I GCAGC 2 cut(s) 172, 388
LweI GCATC 1 cut(s) 222
MaeII ACGT 1 cut(s) 224
MaeIII GTNAC 1 cut(s) 187
MalI GATC 4 cut(s) 72, 96, 135, 210
MboI GATC 4 cut(s) 70, 94, 133, 208
MboII GAAGA 2 cut(s) 80, 191
MflI RGATCY 1 cut(s) 133
MluCI AATT 1 cut(s) 264
MnlI CCTC 1 cut(s) 108
MseI TTAA 2 cut(s) 291, 366
MslI CAYNNNNRTG 1 cut(s) 351
MspI CCGG 1 cut(s) 338
MspR9I CCNGG 1 cut(s) 339
MvnI CGCG 1 cut(s) 23
NciI CCSGG 1 cut(s) 339
NdeII GATC 4 cut(s) 70, 94, 133, 208
PcsI WCGNNNNNNNCGW 1 cut(s) 230
PfeI GAWTC 4 cut(s) 25, 182, 238, 412
PkrI GCNGC 2 cut(s) 162, 403
Ple19I CGATCG 1 cut(s) 211
Psp1406I AACGTT 1 cut(s) 224
PsuI RGATCY 1 cut(s) 133
PvuI CGATCG 1 cut(s) 211
RseI CAYNNNNRTG 1 cut(s) 351
SaqAI TTAA 2 cut(s) 291, 366
SatI GCNGC 2 cut(s) 161, 402
Sau3AI GATC 4 cut(s) 70, 94, 133, 208
ScrFI CCNGG 1 cut(s) 339
SetI ASST 8 cut(s) 43, 165, 207, 227, 286, 291, 321, 432
SfaNI GCATC 1 cut(s) 222
SmiMI CAYNNNNRTG 1 cut(s) 351
Sse9I AATT 1 cut(s) 264
StyD4I CCNGG 1 cut(s) 337
TaaI ACNGT 1 cut(s) 193
TaiI ACGT 1 cut(s) 227
TaqI TCGA 2 cut(s) 195, 207
TasI AATT 1 cut(s) 264
TfiI GAWTC 4 cut(s) 25, 182, 238, 412
Tru1I TTAA 2 cut(s) 291, 366
Tru9I TTAA 2 cut(s) 291, 366
TscAI CASTG 1 cut(s) 36
TseI GCWGC 2 cut(s) 160, 401
TspDTI ATGAA 2 cut(s) 299, 369
TspGWI ACGGA 1 cut(s) 413
TspRI CASTG 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.