MD11G1309300.v1.1

MIP18 family protein At1g68310-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
Physical Location & Seq
Forward (+)
42290530 .. 42291090
561 bp
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UTR
Exon/CDS
Intron
MD11G1309300.v1.1.491

Sequence Viewer

Length: 189 bp
ATGACAAGCTCGGCCATATTCTGTGAGTATCATTTCTCAATTTTGAGCTTCAATTTTGCATTTTTCTGGATAACTTTTACGCCGACAATTCAGCATTGCAGTATGGCAACAGTGATAGGTATGTGCCTGAGAGTTAAACTGAAACATTGCTTCCTCCTTAGTACAAGGTCCGTCAGTTTGCTATGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

63

Amino Acids

7.13

Weight (kDa)

8.77

Isoelectric Point (pI)

27.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0011777)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 12
AfaI GTAC 1 cut(s) 163
AgsI TTSAA 1 cut(s) 52
AluBI AGCT 2 cut(s) 9, 48
AluI AGCT 2 cut(s) 9, 48
AoxI GGCC 1 cut(s) 12
AspS9I GGNCC 1 cut(s) 168
AvaII GGWCC 1 cut(s) 168
Bme18I GGWCC 1 cut(s) 168
BmgT120I GGNCC 1 cut(s) 168
Bse3DI GCAATG 2 cut(s) 94, 145
BseMI GCAATG 2 cut(s) 94, 145
BseMII CTCAG 1 cut(s) 119
BshFI GGCC 1 cut(s) 14
BsnI GGCC 1 cut(s) 14
BspANI GGCC 1 cut(s) 14
BspCNI CTCAG 1 cut(s) 120
BsrDI GCAATG 2 cut(s) 94, 145
Bst4CI ACNGT 1 cut(s) 112
BstDEI CTNAG 2 cut(s) 128, 158
BsuRI GGCC 1 cut(s) 14
BtsIMutI CAGTG 1 cut(s) 117
Cfr13I GGNCC 1 cut(s) 168
Csp6I GTAC 1 cut(s) 162
CviJI RGCY 3 cut(s) 9, 14, 48
CviKI_1 RGCY 3 cut(s) 9, 14, 48
CviQI GTAC 1 cut(s) 162
DdeI CTNAG 2 cut(s) 128, 158
EaeI YGGCCR 1 cut(s) 12
Eco47I GGWCC 1 cut(s) 168
FaiI YATR 4 cut(s) 17, 104, 122, 184
HaeIII GGCC 1 cut(s) 14
Hpy188III TCNNGA 1 cut(s) 67
HpyCH4III ACNGT 1 cut(s) 112
HpyCH4V TGCA 2 cut(s) 59, 99
HpyF3I CTNAG 2 cut(s) 128, 158
LpnPI CCDG 2 cut(s) 52, 140
MluCI AATT 3 cut(s) 39, 52, 87
MnlI CCTC 1 cut(s) 164
MseI TTAA 1 cut(s) 135
PspPI GGNCC 1 cut(s) 168
RsaI GTAC 1 cut(s) 163
RsaNI GTAC 1 cut(s) 162
SaqAI TTAA 1 cut(s) 135
Sau96I GGNCC 1 cut(s) 168
SetI ASST 4 cut(s) 11, 50, 121, 170
SgeI CNNG 5 cut(s) 18, 22, 79, 139, 177
SinI GGWCC 1 cut(s) 168
Sse9I AATT 3 cut(s) 39, 52, 87
TaaI ACNGT 1 cut(s) 112
TasI AATT 3 cut(s) 39, 52, 87
TatI WGTACW 1 cut(s) 161
Tru1I TTAA 1 cut(s) 135
Tru9I TTAA 1 cut(s) 135
TscAI CASTG 1 cut(s) 117
TspGWI ACGGA 1 cut(s) 160
TspRI CASTG 1 cut(s) 117
VpaK11BI GGWCC 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.