FvH4_1g13320

MIP18 family protein At1g68310-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0011777
Physical Location & Seq
Forward (+)
7305248 .. 7307540
2293 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g13320.t2

Sequence Viewer

Length: 357 bp
ATGCGAACCCGGTGGTGCACGCTAAGAAGGAAAGAGTTGCCCGCACCGAAGATCTTCATCACTCCGACGTCGACGCCGTTGATCCTCTCGACATCTATGATCAGAGATCCGGAGCATCCGTACTCGTTAGAGCAGCTCAGCGTGCTTTCCGAGGAGTCCATCACCGTCGATGATAAGCTCGGCCGGATTTTGATTACGTTCACGCCGACAATTCAGCATTGTAGTATGGCAACAGTGATCGGACTATGCCTGAGAGTTAAGCTCAAGCAATGCTTCCCTCCTCATTACAAGGTTGACATTAAGGTATTCCCAGGATCTCATGCAAACGAAGAATCAGAAGCTAGGGTTCCTGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FeS_assembly_P

Protein Analysis

119

Amino Acids

13.37

Weight (kDa)

8.78

Isoelectric Point (pI)

55.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FeS_assembly_P PF01883 6 - 63 8.3e-06 Iron-sulfur cluster assembly protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011777)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G50845
fragaria_vesca FvH4_1g13320 FvH4_1g13320 FvH4_1g13320
malus_domestica MD02G1148000.v1.1 MD11G1309300.v1.1
prunus_persica Prupe.7G154400_v2.0.a1 Prupe.7G154400_v2.0.a1
pyrus_communis pycom02g11670
rosa_chinensis RchiOBHm_Chr2g0101601
rosa_laevigata RLG00000017093
rosa_multiflora Rmu_sc0006153.1_g000005
rosa_roxburghii Rroxscaffold_2G00141160
rosa_rugosa Rorug02G0101000
rosa_samantha Rh2AG148300 Rh2BG153700 Rh2CG154100 Rh2DG154100
rosa_wichuraiana Rw2G011570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 71
AccI GTMKAC 1 cut(s) 71
AccIII TCCGGA 1 cut(s) 109
AciI CCGC 1 cut(s) 42
AclWI GGATC 3 cut(s) 76, 101, 322
AcoI YGGCCR 1 cut(s) 181
AcyI GRCGYC 2 cut(s) 68, 74
AfaI GTAC 1 cut(s) 122
AjnI CCWGG 1 cut(s) 310
AluBI AGCT 4 cut(s) 136, 178, 262, 341
AluI AGCT 4 cut(s) 136, 178, 262, 341
Alw21I GWGCWC 1 cut(s) 20
Alw44I GTGCAC 1 cut(s) 16
AlwI GGATC 3 cut(s) 76, 101, 322
Aor13HI TCCGGA 1 cut(s) 109
AoxI GGCC 1 cut(s) 181
ApaLI GTGCAC 1 cut(s) 16
ApeKI GCWGC 1 cut(s) 133
Asp700I GAANNNNTTC 1 cut(s) 53
AsuC2I CCSGG 1 cut(s) 10
AsuHPI GGTGA 1 cut(s) 154
BaeGI GKGCMC 1 cut(s) 20
Bbv12I GWGCWC 1 cut(s) 20
BbvI GCAGC 1 cut(s) 145
BccI CCATC 1 cut(s) 167
BceAI ACGGC 1 cut(s) 61
BciT130I CCWGG 1 cut(s) 312
BclI TGATCA 1 cut(s) 99
BcnI CCSGG 1 cut(s) 10
BfaI CTAG 1 cut(s) 342
BglII AGATCT 1 cut(s) 51
BisI GCNGC 1 cut(s) 134
BlpI GCTNAGC 1 cut(s) 137
BlsI GCNGC 1 cut(s) 135
Bme1390I CCNGG 2 cut(s) 10, 312
BmiI GGNNCC 1 cut(s) 348
BmrFI CCNGG 2 cut(s) 10, 312
BmsI GCATC 1 cut(s) 124
BplI GAGNNNNNCTC 2 cut(s) 246, 278
Bpu1102I GCTNAGC 1 cut(s) 137
BpuEI CTTGAG 1 cut(s) 248
BpuMI CCSGG 1 cut(s) 10
BsaBI GATNNNNATC 1 cut(s) 56
BsaHI GRCGYC 2 cut(s) 68, 74
BsaJI CCNNGG 2 cut(s) 150, 310
BsaWI WCCGGW 1 cut(s) 109
BsaXI ACNNNNNCTCC 2 cut(s) 104, 134
Bse3DI GCAATG 1 cut(s) 275
Bse8I GATNNNNATC 1 cut(s) 56
BseAI TCCGGA 1 cut(s) 109
BseBI CCWGG 1 cut(s) 312
BseDI CCNNGG 2 cut(s) 150, 310
BseGI GGATG 1 cut(s) 115
BseJI GATNNNNATC 1 cut(s) 56
BseMI GCAATG 1 cut(s) 275
BseMII CTCAG 2 cut(s) 151, 242
BseRI GAGGAG 2 cut(s) 167, 270
BseSI GKGCMC 1 cut(s) 20
BseX3I CGGCCG 1 cut(s) 181
BseXI GCAGC 1 cut(s) 145
Bsh1285I CGRYCG 1 cut(s) 184
BshFI GGCC 1 cut(s) 183
BsiEI CGRYCG 1 cut(s) 184
BsiHKAI GWGCWC 1 cut(s) 20
BsiSI CCGG 3 cut(s) 10, 110, 184
BsnI GGCC 1 cut(s) 183
Bsp1286I GDGCHC 1 cut(s) 20
Bsp13I TCCGGA 1 cut(s) 109
Bsp143I GATC 6 cut(s) 51, 81, 99, 106, 237, 314
Bsp1720I GCTNAGC 1 cut(s) 137
BspACI CCGC 1 cut(s) 42
BspANI GGCC 1 cut(s) 183
BspCNI CTCAG 2 cut(s) 150, 243
BspEI TCCGGA 1 cut(s) 109
BspLI GGNNCC 1 cut(s) 348
BspPI GGATC 3 cut(s) 76, 101, 322
BsrDI GCAATG 1 cut(s) 275
BssECI CCNNGG 2 cut(s) 150, 310
BssMI GATC 6 cut(s) 51, 81, 99, 106, 237, 314
BssNI GRCGYC 2 cut(s) 68, 74
Bst2UI CCWGG 1 cut(s) 312
Bst4CI ACNGT 2 cut(s) 166, 235
BstACI GRCGYC 2 cut(s) 68, 74
BstC8I GCNNGC 3 cut(s) 20, 42, 143
BstDEI CTNAG 3 cut(s) 23, 137, 251
BstF5I GGATG 1 cut(s) 115
BstKTI GATC 6 cut(s) 54, 84, 102, 109, 240, 317
BstMBI GATC 6 cut(s) 51, 81, 99, 106, 237, 314
BstMCI CGRYCG 1 cut(s) 184
BstMWI GCNNNNNNNGC 1 cut(s) 142
BstNI CCWGG 1 cut(s) 312
BstSCI CCNGG 2 cut(s) 8, 310
BstSLI GKGCMC 1 cut(s) 20
BstV1I GCAGC 1 cut(s) 145
BstX2I RGATCY 3 cut(s) 51, 106, 314
BstYI RGATCY 3 cut(s) 51, 106, 314
BstZI CGGCCG 1 cut(s) 181
BsuRI GGCC 1 cut(s) 183
BtsCI GGATG 1 cut(s) 115
BtsIMutI CAGTG 1 cut(s) 240
Cac8I GCNNGC 3 cut(s) 20, 42, 143
CseI GACGC 1 cut(s) 82
Csp6I GTAC 1 cut(s) 121
CviAII CATG 1 cut(s) 320
CviJI RGCY 5 cut(s) 136, 178, 183, 262, 341
CviKI_1 RGCY 5 cut(s) 136, 178, 183, 262, 341
CviQI GTAC 1 cut(s) 121
DdeI CTNAG 3 cut(s) 23, 137, 251
DpnI GATC 6 cut(s) 53, 83, 101, 108, 239, 316
DpnII GATC 6 cut(s) 51, 81, 99, 106, 237, 314
EaeI YGGCCR 1 cut(s) 181
EagI CGGCCG 1 cut(s) 181
EclXI CGGCCG 1 cut(s) 181
Eco52I CGGCCG 1 cut(s) 181
EcoRII CCWGG 1 cut(s) 310
FaeI CATG 1 cut(s) 323
FaiI YATR 4 cut(s) 98, 227, 247, 321
FalI AAGNNNNNCTT 2 cut(s) 257, 289
FatI CATG 1 cut(s) 319
FauI CCCGC 1 cut(s) 49
FbaI TGATCA 1 cut(s) 99
FblI GTMKAC 1 cut(s) 71
Fnu4HI GCNGC 1 cut(s) 134
FokI GGATG 1 cut(s) 102
Fsp4HI GCNGC 1 cut(s) 134
FspBI CTAG 1 cut(s) 342
GluI GCNGC 1 cut(s) 134
HaeIII GGCC 1 cut(s) 183
HapII CCGG 3 cut(s) 10, 110, 184
HgaI GACGC 1 cut(s) 82
Hin1I GRCGYC 2 cut(s) 68, 74
Hin1II CATG 1 cut(s) 323
HincII GTYRAC 2 cut(s) 72, 295
HindII GTYRAC 2 cut(s) 72, 295
HinfI GANTC 2 cut(s) 155, 332
HpaII CCGG 3 cut(s) 10, 110, 184
HphI GGTGA 1 cut(s) 154
Hpy166II GTNNAC 4 cut(s) 18, 72, 201, 295
Hpy188I TCNGA 5 cut(s) 66, 104, 151, 242, 337
Hpy188III TCNNGA 2 cut(s) 88, 110
Hpy8I GTNNAC 4 cut(s) 18, 72, 201, 295
Hpy99I CGWCG 4 cut(s) 70, 73, 76, 170
HpyAV CCTTC 1 cut(s) 21
HpyCH4III ACNGT 2 cut(s) 166, 235
HpyCH4IV ACGT 2 cut(s) 68, 197
HpyCH4V TGCA 2 cut(s) 18, 323
HpyF10VI GCNNNNNNNGC 1 cut(s) 142
HpyF3I CTNAG 3 cut(s) 23, 137, 251
HpySE526I ACGT 2 cut(s) 68, 197
Hsp92I GRCGYC 2 cut(s) 68, 74
Hsp92II CATG 1 cut(s) 323
Kpn2I TCCGGA 1 cut(s) 109
Ksp22I TGATCA 1 cut(s) 99
Kzo9I GATC 6 cut(s) 51, 81, 99, 106, 237, 314
LmnI GCTCC 1 cut(s) 112
LpnPI CCDG 6 cut(s) 23, 123, 197, 263, 297, 324
Lsp1109I GCAGC 1 cut(s) 145
LweI GCATC 1 cut(s) 124
MaeI CTAG 1 cut(s) 342
MaeII ACGT 2 cut(s) 68, 197
MalI GATC 6 cut(s) 53, 83, 101, 108, 239, 316
MboI GATC 6 cut(s) 51, 81, 99, 106, 237, 314
MboII GAAGA 3 cut(s) 46, 61, 341
MflI RGATCY 3 cut(s) 51, 106, 314
MhlI GDGCHC 1 cut(s) 20
MluCI AATT 1 cut(s) 210
MlyI GAGTC 1 cut(s) 164
MmeI TCCRAC 1 cut(s) 89
MnlI CCTC 4 cut(s) 95, 145, 288, 291
MroI TCCGGA 1 cut(s) 109
MroXI GAANNNNTTC 1 cut(s) 53
MseI TTAA 2 cut(s) 258, 300
MspI CCGG 3 cut(s) 10, 110, 184
MspR9I CCNGG 2 cut(s) 10, 312
MvaI CCWGG 1 cut(s) 312
MwoI GCNNNNNNNGC 1 cut(s) 142
NciI CCSGG 1 cut(s) 10
NdeII GATC 6 cut(s) 51, 81, 99, 106, 237, 314
NlaIII CATG 1 cut(s) 323
NlaIV GGNNCC 1 cut(s) 348
NmeAIII GCCGAG 1 cut(s) 159
PcsI WCGNNNNNNNCGW 2 cut(s) 74, 203
PdmI GAANNNNTTC 1 cut(s) 53
PfeI GAWTC 1 cut(s) 332
PkrI GCNGC 1 cut(s) 135
PleI GAGTC 1 cut(s) 163
PpsI GAGTC 1 cut(s) 163
Psp6I CCWGG 1 cut(s) 310
PspGI CCWGG 1 cut(s) 310
PspN4I GGNNCC 1 cut(s) 348
PsuI RGATCY 3 cut(s) 51, 106, 314
RsaI GTAC 1 cut(s) 122
RsaNI GTAC 1 cut(s) 121
SalI GTCGAC 1 cut(s) 70
SaqAI TTAA 2 cut(s) 258, 300
SatI GCNGC 1 cut(s) 134
Sau3AI GATC 6 cut(s) 51, 81, 99, 106, 237, 314
SchI GAGTC 1 cut(s) 164
ScrFI CCNGG 2 cut(s) 10, 312
SduI GDGCHC 1 cut(s) 20
SetI ASST 8 cut(s) 71, 138, 180, 200, 264, 294, 306, 343
SfaNI GCATC 1 cut(s) 124
SgrDI CGTCGACG 1 cut(s) 70
SmlI CTYRAG 1 cut(s) 263
SmoI CTYRAG 1 cut(s) 263
Sse9I AATT 1 cut(s) 210
SsiI CCGC 1 cut(s) 42
SspMI CTAG 1 cut(s) 342
StyD4I CCNGG 2 cut(s) 8, 310
TaaI ACNGT 2 cut(s) 166, 235
TaiI ACGT 2 cut(s) 71, 200
TaqI TCGA 3 cut(s) 71, 89, 168
TasI AATT 1 cut(s) 210
TfiI GAWTC 1 cut(s) 332
Tru1I TTAA 2 cut(s) 258, 300
Tru9I TTAA 2 cut(s) 258, 300
TscAI CASTG 1 cut(s) 240
TseI GCWGC 1 cut(s) 133
TspDTI ATGAA 1 cut(s) 46
TspGWI ACGGA 1 cut(s) 108
TspRI CASTG 1 cut(s) 240
VneI GTGCAC 1 cut(s) 16
XmiI GTMKAC 1 cut(s) 71
XmnI GAANNNNTTC 1 cut(s) 53
XspI CTAG 1 cut(s) 342
ZraI GACGTC 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.