MD02G1148000.v1.1

MIP18 family protein At1g68310-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0011777
Physical Location & Seq
Forward (+)
12180370 .. 12182218
1849 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1148000.v1.1.491

Sequence Viewer

Length: 273 bp
ATGACAAGCTCGGCCGTATTCTGTGAGATAACTTTTACGCCGACGATTCAGCATTGCAGTATGGCAACAGTGATAGGTCTGTGCCTGAGAGTTAAACTGAAACATTGCTTCCCTCCTCATTACAAGGTTGACATTAAAGTATCTCCAGGATCTCATGCAGATGAAGAATCAGTTAACAAGCAGTTGAATGATAAAGAAAGAGTTGCTGCTGCCTTGGAGAACCCCAACCTTCGCCAACTTGTGGACGAGTGCCTGTATTCCAACGAACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FeS_assembly_P

Protein Analysis

91

Amino Acids

10.07

Weight (kDa)

6.03

Isoelectric Point (pI)

46.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011777)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G50845
fragaria_vesca FvH4_1g13320 FvH4_1g13320 FvH4_1g13320
malus_domestica MD02G1148000.v1.1 MD11G1309300.v1.1
prunus_persica Prupe.7G154400_v2.0.a1 Prupe.7G154400_v2.0.a1
pyrus_communis pycom02g11670
rosa_chinensis RchiOBHm_Chr2g0101601
rosa_laevigata RLG00000017093
rosa_multiflora Rmu_sc0006153.1_g000005
rosa_roxburghii Rroxscaffold_2G00141160
rosa_rugosa Rorug02G0101000
rosa_samantha Rh2AG148300 Rh2BG153700 Rh2CG154100 Rh2DG154100
rosa_wichuraiana Rw2G011570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 241
AclWI GGATC 1 cut(s) 157
AcoI YGGCCR 1 cut(s) 12
AfiI CCNNNNNNNGG 1 cut(s) 241
AgsI TTSAA 1 cut(s) 187
AjnI CCWGG 1 cut(s) 145
AluBI AGCT 1 cut(s) 9
AluI AGCT 1 cut(s) 9
AlwI GGATC 1 cut(s) 157
AoxI GGCC 1 cut(s) 12
ApeKI GCWGC 2 cut(s) 206, 209
BbvI GCAGC 2 cut(s) 193, 196
BciT130I CCWGG 1 cut(s) 147
BisI GCNGC 2 cut(s) 207, 210
BlsI GCNGC 2 cut(s) 208, 211
Bme1390I CCNGG 1 cut(s) 147
BmrFI CCNGG 1 cut(s) 147
BpmI CTGGAG 1 cut(s) 129
BsaJI CCNNGG 1 cut(s) 213
Bsc4I CCNNNNNNNGG 1 cut(s) 241
Bse3DI GCAATG 2 cut(s) 52, 103
BseBI CCWGG 1 cut(s) 147
BseDI CCNNGG 1 cut(s) 213
BseLI CCNNNNNNNGG 1 cut(s) 241
BseMI GCAATG 2 cut(s) 52, 103
BseMII CTCAG 1 cut(s) 77
BseRI GAGGAG 1 cut(s) 105
BseX3I CGGCCG 1 cut(s) 12
BseXI GCAGC 2 cut(s) 193, 196
Bsh1285I CGRYCG 1 cut(s) 15
BshFI GGCC 1 cut(s) 14
BsiEI CGRYCG 1 cut(s) 15
BslI CCNNNNNNNGG 1 cut(s) 241
BsnI GGCC 1 cut(s) 14
Bsp143I GATC 1 cut(s) 149
BspANI GGCC 1 cut(s) 14
BspCNI CTCAG 1 cut(s) 78
BspPI GGATC 1 cut(s) 157
BsrDI GCAATG 2 cut(s) 52, 103
BssECI CCNNGG 1 cut(s) 213
BssMI GATC 1 cut(s) 149
BssT1I CCWWGG 1 cut(s) 213
Bst2UI CCWGG 1 cut(s) 147
Bst4CI ACNGT 1 cut(s) 70
BstDEI CTNAG 1 cut(s) 86
BstKTI GATC 1 cut(s) 152
BstMBI GATC 1 cut(s) 149
BstMCI CGRYCG 1 cut(s) 15
BstNI CCWGG 1 cut(s) 147
BstSCI CCNGG 1 cut(s) 145
BstV1I GCAGC 2 cut(s) 193, 196
BstX2I RGATCY 1 cut(s) 149
BstYI RGATCY 1 cut(s) 149
BstZI CGGCCG 1 cut(s) 12
BsuRI GGCC 1 cut(s) 14
BtsIMutI CAGTG 1 cut(s) 75
CviAII CATG 1 cut(s) 155
CviJI RGCY 2 cut(s) 9, 14
CviKI_1 RGCY 2 cut(s) 9, 14
DdeI CTNAG 1 cut(s) 86
DpnI GATC 1 cut(s) 151
DpnII GATC 1 cut(s) 149
EaeI YGGCCR 1 cut(s) 12
EagI CGGCCG 1 cut(s) 12
EclXI CGGCCG 1 cut(s) 12
Eco130I CCWWGG 1 cut(s) 213
Eco52I CGGCCG 1 cut(s) 12
EcoRII CCWGG 1 cut(s) 145
EcoT14I CCWWGG 1 cut(s) 213
ErhI CCWWGG 1 cut(s) 213
FaeI CATG 1 cut(s) 158
FaiI YATR 2 cut(s) 62, 156
FatI CATG 1 cut(s) 154
Fnu4HI GCNGC 2 cut(s) 207, 210
Fsp4HI GCNGC 2 cut(s) 207, 210
GluI GCNGC 2 cut(s) 207, 210
GsuI CTGGAG 1 cut(s) 129
HaeIII GGCC 1 cut(s) 14
Hin1II CATG 1 cut(s) 158
HincII GTYRAC 2 cut(s) 130, 175
HindII GTYRAC 2 cut(s) 130, 175
HinfI GANTC 2 cut(s) 46, 167
HpaI GTTAAC 1 cut(s) 175
Hpy166II GTNNAC 3 cut(s) 130, 175, 244
Hpy188I TCNGA 1 cut(s) 272
Hpy8I GTNNAC 3 cut(s) 130, 175, 244
Hpy99I CGWCG 1 cut(s) 46
HpyAV CCTTC 1 cut(s) 239
HpyCH4III ACNGT 1 cut(s) 70
HpyCH4V TGCA 2 cut(s) 57, 158
HpyF3I CTNAG 1 cut(s) 86
Hsp92II CATG 1 cut(s) 158
KspAI GTTAAC 1 cut(s) 175
Kzo9I GATC 1 cut(s) 149
LpnPI CCDG 4 cut(s) 98, 132, 159, 266
Lsp1109I GCAGC 2 cut(s) 193, 196
MalI GATC 1 cut(s) 151
MboI GATC 1 cut(s) 149
MboII GAAGA 1 cut(s) 176
MflI RGATCY 1 cut(s) 149
MnlI CCTC 2 cut(s) 123, 126
MseI TTAA 3 cut(s) 93, 135, 174
MslI CAYNNNNRTG 1 cut(s) 159
MspR9I CCNGG 1 cut(s) 147
MvaI CCWGG 1 cut(s) 147
NdeII GATC 1 cut(s) 149
NlaIII CATG 1 cut(s) 158
PfeI GAWTC 2 cut(s) 46, 167
PflMI CCANNNNNTGG 1 cut(s) 241
PfoI TCCNGGA 1 cut(s) 145
PkrI GCNGC 2 cut(s) 208, 211
Psp6I CCWGG 1 cut(s) 145
PspGI CCWGG 1 cut(s) 145
PsuI RGATCY 1 cut(s) 149
RseI CAYNNNNRTG 1 cut(s) 159
SaqAI TTAA 3 cut(s) 93, 135, 174
SatI GCNGC 2 cut(s) 207, 210
Sau3AI GATC 1 cut(s) 149
ScrFI CCNGG 1 cut(s) 147
SetI ASST 4 cut(s) 11, 79, 129, 231
SmiMI CAYNNNNRTG 1 cut(s) 159
StyD4I CCNGG 1 cut(s) 145
StyI CCWWGG 1 cut(s) 213
TaaI ACNGT 1 cut(s) 70
TfiI GAWTC 2 cut(s) 46, 167
Tru1I TTAA 3 cut(s) 93, 135, 174
Tru9I TTAA 3 cut(s) 93, 135, 174
TscAI CASTG 1 cut(s) 75
TseI GCWGC 2 cut(s) 206, 209
TspDTI ATGAA 1 cut(s) 177
TspRI CASTG 1 cut(s) 75
Van91I CCANNNNNTGG 1 cut(s) 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.