RLG00000017093

MIP18 family protein At1g68310-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0011777
Physical Location & Seq
Forward (+)
12747978 .. 12749779
1802 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017093

Sequence Viewer

Length: 501 bp
ATGACGCTGGGTCTGATCAATGCAAACCCGGTGGTGCACGCTAAGAAGGAAAGGGTTGCCCGCACCGAAGATCTTCACTCCGACGTCGACGCCGCCGCCGTTGATCCTCTCGAAATCTATGATATCCTTTTATCTCTATCATTTCTCTTTAAATTCCGGGATATAAGAGATCCGGAGCATCCGTACTCGTTAGAGCAGCTCAGCGTGCTTTCCGAGGAGTCCATCACCGTCGACGACAAGCTCGGCCGGATTCTGATTACGTTCACGCCGACCATTCAGCATTGCAGTATGGCAACAGTGATAGGACTATGCCTGAGAGTTAAACTCAAGCAATGTTTCCCTCCTCATTACAAGGTTGACATTAAGGTATCTCCAGGATCTCATGCAGATGAAGAATCAGTTAATAAGCAGTTGAATGATAAAGAAAGAGTTGCTGCTGCCCTGGAGAATCCTAACCTTCGCGAACTTGTGGATGAGTGCCTCTATTCCAGTGAACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FeS_assembly_P

Protein Analysis

167

Amino Acids

18.67

Weight (kDa)

5.09

Isoelectric Point (pI)

39.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011777)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G50845
fragaria_vesca FvH4_1g13320 FvH4_1g13320 FvH4_1g13320
malus_domestica MD02G1148000.v1.1 MD11G1309300.v1.1
prunus_persica Prupe.7G154400_v2.0.a1 Prupe.7G154400_v2.0.a1
pyrus_communis pycom02g11670
rosa_chinensis RchiOBHm_Chr2g0101601
rosa_laevigata RLG00000017093
rosa_multiflora Rmu_sc0006153.1_g000005
rosa_roxburghii Rroxscaffold_2G00141160
rosa_rugosa Rorug02G0101000
rosa_samantha Rh2AG148300 Rh2BG153700 Rh2CG154100 Rh2DG154100
rosa_wichuraiana Rw2G011570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 87
AccI GTMKAC 2 cut(s) 87, 231
AccII CGCG 1 cut(s) 462
AccIII TCCGGA 1 cut(s) 172
AciI CCGC 3 cut(s) 61, 93, 96
AclWI GGATC 3 cut(s) 98, 164, 385
AcoI YGGCCR 1 cut(s) 244
AcsI RAATTY 1 cut(s) 152
AcyI GRCGYC 2 cut(s) 84, 90
AfaI GTAC 1 cut(s) 185
AgsI TTSAA 1 cut(s) 415
AhdI GACNNNNNGTC 1 cut(s) 9
AjnI CCWGG 2 cut(s) 373, 441
AluBI AGCT 2 cut(s) 199, 241
AluI AGCT 2 cut(s) 199, 241
Alw21I GWGCWC 1 cut(s) 39
Alw44I GTGCAC 1 cut(s) 35
AlwI GGATC 3 cut(s) 98, 164, 385
Aor13HI TCCGGA 1 cut(s) 172
AoxI GGCC 1 cut(s) 244
ApaLI GTGCAC 1 cut(s) 35
ApeKI GCWGC 3 cut(s) 196, 434, 437
ApoI RAATTY 1 cut(s) 152
Asp700I GAANNNNTTC 1 cut(s) 72
AsuC2I CCSGG 2 cut(s) 29, 158
AsuHPI GGTGA 1 cut(s) 217
BaeGI GKGCMC 1 cut(s) 39
Bbv12I GWGCWC 1 cut(s) 39
BbvI GCAGC 3 cut(s) 208, 421, 424
BccI CCATC 1 cut(s) 230
BceAI ACGGC 1 cut(s) 83
BciT130I CCWGG 2 cut(s) 375, 443
BclI TGATCA 1 cut(s) 15
BcnI CCSGG 2 cut(s) 29, 158
BglII AGATCT 1 cut(s) 70
BisI GCNGC 5 cut(s) 93, 96, 197, 435, 438
BlpI GCTNAGC 1 cut(s) 200
BlsI GCNGC 5 cut(s) 94, 97, 198, 436, 439
Bme1390I CCNGG 4 cut(s) 29, 158, 375, 443
BmeRI GACNNNNNGTC 1 cut(s) 9
BmrFI CCNGG 4 cut(s) 29, 158, 375, 443
BmsI GCATC 1 cut(s) 187
BplI GAGNNNNNCTC 2 cut(s) 309, 341
BpmI CTGGAG 2 cut(s) 357, 464
Bpu1102I GCTNAGC 1 cut(s) 200
BpuEI CTTGAG 1 cut(s) 311
BpuMI CCSGG 2 cut(s) 29, 158
BsaHI GRCGYC 2 cut(s) 84, 90
BsaJI CCNNGG 2 cut(s) 213, 441
BsaWI WCCGGW 1 cut(s) 172
BsaXI ACNNNNNCTCC 2 cut(s) 167, 197
Bse1I ACTGG 1 cut(s) 489
Bse3DI GCAATG 2 cut(s) 280, 338
BseAI TCCGGA 1 cut(s) 172
BseBI CCWGG 2 cut(s) 375, 443
BseDI CCNNGG 2 cut(s) 213, 441
BseGI GGATG 2 cut(s) 178, 478
BseMI GCAATG 2 cut(s) 280, 338
BseMII CTCAG 2 cut(s) 214, 305
BseNI ACTGG 1 cut(s) 489
BseRI GAGGAG 2 cut(s) 230, 333
BseSI GKGCMC 1 cut(s) 39
BseX3I CGGCCG 1 cut(s) 244
BseXI GCAGC 3 cut(s) 208, 421, 424
BseYI CCCAGC 1 cut(s) 7
Bsh1236I CGCG 1 cut(s) 462
Bsh1285I CGRYCG 1 cut(s) 247
BshFI GGCC 1 cut(s) 246
BsiEI CGRYCG 1 cut(s) 247
BsiHKAI GWGCWC 1 cut(s) 39
BsiSI CCGG 4 cut(s) 29, 157, 173, 247
BsnI GGCC 1 cut(s) 246
Bsp1286I GDGCHC 1 cut(s) 39
Bsp13I TCCGGA 1 cut(s) 172
Bsp143I GATC 5 cut(s) 15, 70, 103, 169, 377
Bsp1720I GCTNAGC 1 cut(s) 200
Bsp68I TCGCGA 1 cut(s) 462
BspACI CCGC 3 cut(s) 61, 93, 96
BspANI GGCC 1 cut(s) 246
BspCNI CTCAG 2 cut(s) 213, 306
BspEI TCCGGA 1 cut(s) 172
BspFNI CGCG 1 cut(s) 462
BspPI GGATC 3 cut(s) 98, 164, 385
BsrDI GCAATG 2 cut(s) 280, 338
BsrI ACTGG 1 cut(s) 489
BssECI CCNNGG 2 cut(s) 213, 441
BssMI GATC 5 cut(s) 15, 70, 103, 169, 377
BssNI GRCGYC 2 cut(s) 84, 90
Bst2UI CCWGG 2 cut(s) 375, 443
Bst4CI ACNGT 3 cut(s) 229, 298, 498
BstACI GRCGYC 2 cut(s) 84, 90
BstC8I GCNNGC 3 cut(s) 39, 61, 206
BstDEI CTNAG 3 cut(s) 42, 200, 314
BstF5I GGATG 2 cut(s) 178, 478
BstFNI CGCG 1 cut(s) 462
BstKTI GATC 5 cut(s) 18, 73, 106, 172, 380
BstMBI GATC 5 cut(s) 15, 70, 103, 169, 377
BstMCI CGRYCG 1 cut(s) 247
BstMWI GCNNNNNNNGC 1 cut(s) 205
BstNI CCWGG 2 cut(s) 375, 443
BstSCI CCNGG 4 cut(s) 27, 156, 373, 441
BstSLI GKGCMC 1 cut(s) 39
BstUI CGCG 1 cut(s) 462
BstV1I GCAGC 3 cut(s) 208, 421, 424
BstX2I RGATCY 3 cut(s) 70, 169, 377
BstYI RGATCY 3 cut(s) 70, 169, 377
BstZI CGGCCG 1 cut(s) 244
BsuRI GGCC 1 cut(s) 246
BtsCI GGATG 2 cut(s) 178, 478
BtsIMutI CAGTG 2 cut(s) 303, 496
BtuMI TCGCGA 1 cut(s) 462
Cac8I GCNNGC 3 cut(s) 39, 61, 206
CseI GACGC 2 cut(s) 13, 98
Csp6I GTAC 1 cut(s) 184
CspCI CAANNNNNGTGG 2 cut(s) 12, 47
CviAII CATG 1 cut(s) 383
CviJI RGCY 3 cut(s) 199, 241, 246
CviKI_1 RGCY 3 cut(s) 199, 241, 246
CviQI GTAC 1 cut(s) 184
DdeI CTNAG 3 cut(s) 42, 200, 314
DpnI GATC 5 cut(s) 17, 72, 105, 171, 379
DpnII GATC 5 cut(s) 15, 70, 103, 169, 377
DraI TTTAAA 1 cut(s) 151
DriI GACNNNNNGTC 1 cut(s) 9
EaeI YGGCCR 1 cut(s) 244
EagI CGGCCG 1 cut(s) 244
Eam1105I GACNNNNNGTC 1 cut(s) 9
EclXI CGGCCG 1 cut(s) 244
Eco32I GATATC 1 cut(s) 124
Eco52I CGGCCG 1 cut(s) 244
EcoRII CCWGG 2 cut(s) 373, 441
EcoRV GATATC 1 cut(s) 124
FaeI CATG 1 cut(s) 386
FaiI YATR 5 cut(s) 120, 164, 290, 310, 384
FatI CATG 1 cut(s) 382
FauI CCCGC 1 cut(s) 68
FbaI TGATCA 1 cut(s) 15
FblI GTMKAC 2 cut(s) 87, 231
Fnu4HI GCNGC 5 cut(s) 93, 96, 197, 435, 438
FokI GGATG 2 cut(s) 165, 485
Fsp4HI GCNGC 5 cut(s) 93, 96, 197, 435, 438
GluI GCNGC 5 cut(s) 93, 96, 197, 435, 438
GsaI CCCAGC 1 cut(s) 11
GsuI CTGGAG 2 cut(s) 357, 464
HaeIII GGCC 1 cut(s) 246
HapII CCGG 4 cut(s) 29, 157, 173, 247
HgaI GACGC 2 cut(s) 13, 98
Hin1I GRCGYC 2 cut(s) 84, 90
Hin1II CATG 1 cut(s) 386
HincII GTYRAC 3 cut(s) 88, 232, 358
HindII GTYRAC 3 cut(s) 88, 232, 358
HinfI GANTC 4 cut(s) 218, 250, 395, 448
HpaII CCGG 4 cut(s) 29, 157, 173, 247
HphI GGTGA 1 cut(s) 217
Hpy166II GTNNAC 6 cut(s) 37, 88, 232, 264, 358, 494
Hpy188I TCNGA 4 cut(s) 15, 82, 214, 255
Hpy188III TCNNGA 3 cut(s) 110, 173, 461
Hpy8I GTNNAC 6 cut(s) 37, 88, 232, 264, 358, 494
Hpy99I CGWCG 5 cut(s) 86, 89, 92, 233, 236
HpyAV CCTTC 2 cut(s) 40, 467
HpyCH4III ACNGT 3 cut(s) 229, 298, 498
HpyCH4IV ACGT 2 cut(s) 84, 260
HpyCH4V TGCA 4 cut(s) 23, 37, 285, 386
HpyF10VI GCNNNNNNNGC 1 cut(s) 205
HpyF3I CTNAG 3 cut(s) 42, 200, 314
HpySE526I ACGT 2 cut(s) 84, 260
Hsp92I GRCGYC 2 cut(s) 84, 90
Hsp92II CATG 1 cut(s) 386
Kpn2I TCCGGA 1 cut(s) 172
Ksp22I TGATCA 1 cut(s) 15
Kzo9I GATC 5 cut(s) 15, 70, 103, 169, 377
LmnI GCTCC 1 cut(s) 175
LpnPI CCDG 9 cut(s) 42, 170, 186, 260, 326, 360, 387, 428, 455
Lsp1109I GCAGC 3 cut(s) 208, 421, 424
LweI GCATC 1 cut(s) 187
MaeII ACGT 2 cut(s) 84, 260
MalI GATC 5 cut(s) 17, 72, 105, 171, 379
MboI GATC 5 cut(s) 15, 70, 103, 169, 377
MboII GAAGA 3 cut(s) 65, 80, 404
MflI RGATCY 3 cut(s) 70, 169, 377
MhlI GDGCHC 1 cut(s) 39
MluCI AATT 1 cut(s) 152
MlyI GAGTC 1 cut(s) 227
MmeI TCCRAC 1 cut(s) 105
MnlI CCTC 5 cut(s) 117, 208, 351, 354, 491
MroI TCCGGA 1 cut(s) 172
MroXI GAANNNNTTC 1 cut(s) 72
MseI TTAA 4 cut(s) 150, 321, 363, 402
MslI CAYNNNNRTG 1 cut(s) 387
MspI CCGG 4 cut(s) 29, 157, 173, 247
MspR9I CCNGG 4 cut(s) 29, 158, 375, 443
MvaI CCWGG 2 cut(s) 375, 443
MvnI CGCG 1 cut(s) 462
MwoI GCNNNNNNNGC 1 cut(s) 205
NciI CCSGG 2 cut(s) 29, 158
NdeII GATC 5 cut(s) 15, 70, 103, 169, 377
NlaIII CATG 1 cut(s) 386
NmeAIII GCCGAG 1 cut(s) 222
NruI TCGCGA 1 cut(s) 462
PcsI WCGNNNNNNNCGW 2 cut(s) 96, 266
PdmI GAANNNNTTC 1 cut(s) 72
PfeI GAWTC 3 cut(s) 250, 395, 448
PfoI TCCNGGA 2 cut(s) 156, 373
PkrI GCNGC 5 cut(s) 94, 97, 198, 436, 439
PleI GAGTC 1 cut(s) 226
PpsI GAGTC 1 cut(s) 226
Psp6I CCWGG 2 cut(s) 373, 441
PspFI CCCAGC 1 cut(s) 7
PspGI CCWGG 2 cut(s) 373, 441
PsuI RGATCY 3 cut(s) 70, 169, 377
RruI TCGCGA 1 cut(s) 462
RsaI GTAC 1 cut(s) 185
RsaNI GTAC 1 cut(s) 184
RseI CAYNNNNRTG 1 cut(s) 387
SalI GTCGAC 2 cut(s) 86, 230
SaqAI TTAA 4 cut(s) 150, 321, 363, 402
SatI GCNGC 5 cut(s) 93, 96, 197, 435, 438
Sau3AI GATC 5 cut(s) 15, 70, 103, 169, 377
SchI GAGTC 1 cut(s) 227
ScrFI CCNGG 4 cut(s) 29, 158, 375, 443
SduI GDGCHC 1 cut(s) 39
SetI ASST 7 cut(s) 87, 201, 243, 263, 357, 369, 459
SfaNI GCATC 1 cut(s) 187
SgrDI CGTCGACG 2 cut(s) 86, 230
SmiMI CAYNNNNRTG 1 cut(s) 387
SmlI CTYRAG 1 cut(s) 326
SmoI CTYRAG 1 cut(s) 326
Sse9I AATT 1 cut(s) 152
SsiI CCGC 3 cut(s) 61, 93, 96
StyD4I CCNGG 4 cut(s) 27, 156, 373, 441
TaaI ACNGT 3 cut(s) 229, 298, 498
TaiI ACGT 2 cut(s) 87, 263
TaqI TCGA 3 cut(s) 87, 111, 231
TasI AATT 1 cut(s) 152
TauI GCSGC 2 cut(s) 95, 98
TfiI GAWTC 3 cut(s) 250, 395, 448
Tru1I TTAA 4 cut(s) 150, 321, 363, 402
Tru9I TTAA 4 cut(s) 150, 321, 363, 402
TscAI CASTG 2 cut(s) 303, 496
TseI GCWGC 3 cut(s) 196, 434, 437
TspDTI ATGAA 1 cut(s) 405
TspGWI ACGGA 1 cut(s) 171
TspRI CASTG 2 cut(s) 303, 496
VneI GTGCAC 1 cut(s) 35
XapI RAATTY 1 cut(s) 152
XmiI GTMKAC 2 cut(s) 87, 231
XmnI GAANNNNTTC 1 cut(s) 72
ZraI GACGTC 1 cut(s) 85
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.