Prupe.7G154400_v2.0.a1

MIP18 family protein At1g68310-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0011777
Physical Location & Seq
Reverse (-)
16407658 .. 16410237
2580 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G154400.1

Sequence Viewer

Length: 519 bp
ATGACGCTGGGTCTGATCAATGCGAACCCCGTGGTTCACGCTAAAAGGGAAAGGGTTGCTCGCACTGAAGATCTCCATGCTGACGATGCCGTTGATCCTCTCGATATCTATGATATCCTTTCCATTTCTCACTGTCTTTTTTTCTTTTTTGGAATTTTTTTTTTTACTTGGATTTTGGATATTAGAGATCCAGAGCACCCATATTCCTTAGAGCAGCTCAGCGTGCTTTCAGAGGAATCGATCACCGTTGATGACAAGCTCGGTCGTATTCTGATAACTTTCACGCCGACTATTCAGCATTGCAGTATGGCAACAGTGATAGGTCTTTGCCTGAGAGTTAAACTAAAACACTGTTTCCCTCCTCATTATAAGGTTGACATTAAAGTATCTCCAGGATCTCATGCAAATGAAGAATCAGTTAACAAGCAGTTGAATGATAAAGAAAGAGTGGCTGCTGCCCTGGAGAATCCCAACCTTCGCCAACTCGTGGACGAGTGCCTGTATTCCAGTGAACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FeS_assembly_P

Protein Analysis

173

Amino Acids

19.55

Weight (kDa)

5.27

Isoelectric Point (pI)

41.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011777)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G50845
fragaria_vesca FvH4_1g13320 FvH4_1g13320 FvH4_1g13320
malus_domestica MD02G1148000.v1.1 MD11G1309300.v1.1
prunus_persica Prupe.7G154400_v2.0.a1 Prupe.7G154400_v2.0.a1
pyrus_communis pycom02g11670
rosa_chinensis RchiOBHm_Chr2g0101601
rosa_laevigata RLG00000017093
rosa_multiflora Rmu_sc0006153.1_g000005
rosa_roxburghii Rroxscaffold_2G00141160
rosa_rugosa Rorug02G0101000
rosa_samantha Rh2AG148300 Rh2BG153700 Rh2CG154100 Rh2DG154100
rosa_wichuraiana Rw2G011570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 369
AccB7I CCANNNNNTGG 1 cut(s) 487
AclWI GGATC 3 cut(s) 89, 182, 403
AcsI RAATTY 1 cut(s) 153
AcuI CTGAAG 1 cut(s) 87
AfiI CCNNNNNNNGG 1 cut(s) 487
AgsI TTSAA 1 cut(s) 433
AhdI GACNNNNNGTC 1 cut(s) 9
AjnI CCWGG 2 cut(s) 391, 459
AluBI AGCT 2 cut(s) 217, 259
AluI AGCT 2 cut(s) 217, 259
Alw21I GWGCWC 1 cut(s) 198
AlwI GGATC 3 cut(s) 89, 182, 403
ApeKI GCWGC 3 cut(s) 214, 452, 455
ApoI RAATTY 1 cut(s) 153
AsuHPI GGTGA 1 cut(s) 235
BauI CACGAG 1 cut(s) 485
Bbv12I GWGCWC 1 cut(s) 198
BbvI GCAGC 3 cut(s) 226, 439, 442
BceAI ACGGC 1 cut(s) 74
BciT130I CCWGG 2 cut(s) 393, 461
BclI TGATCA 1 cut(s) 15
BglII AGATCT 1 cut(s) 70
BisI GCNGC 3 cut(s) 215, 453, 456
BlpI GCTNAGC 1 cut(s) 218
BlsI GCNGC 3 cut(s) 216, 454, 457
Bme1390I CCNGG 2 cut(s) 393, 461
BmeRI GACNNNNNGTC 1 cut(s) 9
BmrFI CCNGG 2 cut(s) 393, 461
BmsI GCATC 1 cut(s) 76
BpmI CTGGAG 2 cut(s) 375, 482
Bpu1102I GCTNAGC 1 cut(s) 218
Bsa29I ATCGAT 1 cut(s) 239
BsaJI CCNNGG 2 cut(s) 30, 459
Bsc4I CCNNNNNNNGG 1 cut(s) 487
Bse1I ACTGG 1 cut(s) 507
Bse3DI GCAATG 1 cut(s) 298
BseBI CCWGG 2 cut(s) 393, 461
BseCI ATCGAT 1 cut(s) 239
BseDI CCNNGG 2 cut(s) 30, 459
BseLI CCNNNNNNNGG 1 cut(s) 487
BseMI GCAATG 1 cut(s) 298
BseMII CTCAG 2 cut(s) 232, 323
BseNI ACTGG 1 cut(s) 507
BseRI GAGGAG 1 cut(s) 351
BseXI GCAGC 3 cut(s) 226, 439, 442
BseYI CCCAGC 1 cut(s) 7
Bsh1285I CGRYCG 1 cut(s) 265
BshVI ATCGAT 1 cut(s) 239
BsiEI CGRYCG 1 cut(s) 265
BsiHKAI GWGCWC 1 cut(s) 198
BslI CCNNNNNNNGG 1 cut(s) 487
Bsp1286I GDGCHC 1 cut(s) 198
Bsp143I GATC 6 cut(s) 15, 70, 94, 187, 240, 395
Bsp1720I GCTNAGC 1 cut(s) 218
BspCNI CTCAG 2 cut(s) 231, 324
BspDI ATCGAT 1 cut(s) 239
BspPI GGATC 3 cut(s) 89, 182, 403
BsrDI GCAATG 1 cut(s) 298
BsrI ACTGG 1 cut(s) 507
BssECI CCNNGG 2 cut(s) 30, 459
BssMI GATC 6 cut(s) 15, 70, 94, 187, 240, 395
BssSI CACGAG 1 cut(s) 485
Bst2BI CACGAG 1 cut(s) 485
Bst2UI CCWGG 2 cut(s) 393, 461
Bst4CI ACNGT 4 cut(s) 134, 247, 316, 353
BstC8I GCNNGC 2 cut(s) 61, 224
BstDEI CTNAG 3 cut(s) 208, 218, 332
BstDSI CCRYGG 1 cut(s) 30
BstKTI GATC 6 cut(s) 18, 73, 97, 190, 243, 398
BstMBI GATC 6 cut(s) 15, 70, 94, 187, 240, 395
BstMCI CGRYCG 1 cut(s) 265
BstMWI GCNNNNNNNGC 2 cut(s) 86, 223
BstNI CCWGG 2 cut(s) 393, 461
BstSCI CCNGG 2 cut(s) 391, 459
BstV1I GCAGC 3 cut(s) 226, 439, 442
BstX2I RGATCY 3 cut(s) 70, 187, 395
BstYI RGATCY 3 cut(s) 70, 187, 395
Bsu15I ATCGAT 1 cut(s) 239
BsuTUI ATCGAT 1 cut(s) 239
BtgI CCRYGG 1 cut(s) 30
BtsIMutI CAGTG 5 cut(s) 63, 130, 321, 349, 514
Cac8I GCNNGC 2 cut(s) 61, 224
ClaI ATCGAT 1 cut(s) 239
CseI GACGC 1 cut(s) 13
CviAII CATG 2 cut(s) 77, 401
CviJI RGCY 3 cut(s) 217, 259, 452
CviKI_1 RGCY 3 cut(s) 217, 259, 452
DdeI CTNAG 3 cut(s) 208, 218, 332
DpnI GATC 6 cut(s) 17, 72, 96, 189, 242, 397
DpnII GATC 6 cut(s) 15, 70, 94, 187, 240, 395
DriI GACNNNNNGTC 1 cut(s) 9
Eam1105I GACNNNNNGTC 1 cut(s) 9
Eco32I GATATC 2 cut(s) 106, 115
Eco57I CTGAAG 1 cut(s) 87
EcoRII CCWGG 2 cut(s) 391, 459
EcoRV GATATC 2 cut(s) 106, 115
FaeI CATG 2 cut(s) 80, 404
FaiI YATR 6 cut(s) 78, 111, 202, 308, 369, 402
FatI CATG 2 cut(s) 76, 400
FbaI TGATCA 1 cut(s) 15
Fnu4HI GCNGC 3 cut(s) 215, 453, 456
Fsp4HI GCNGC 3 cut(s) 215, 453, 456
GluI GCNGC 3 cut(s) 215, 453, 456
GsaI CCCAGC 1 cut(s) 11
GsuI CTGGAG 2 cut(s) 375, 482
HgaI GACGC 1 cut(s) 13
Hin1II CATG 2 cut(s) 80, 404
HincII GTYRAC 2 cut(s) 376, 421
HindII GTYRAC 2 cut(s) 376, 421
HinfI GANTC 3 cut(s) 236, 413, 466
HpaI GTTAAC 1 cut(s) 421
HphI GGTGA 1 cut(s) 235
Hpy166II GTNNAC 5 cut(s) 37, 376, 421, 490, 512
Hpy188I TCNGA 4 cut(s) 15, 232, 273, 518
Hpy188III TCNNGA 2 cut(s) 101, 191
Hpy8I GTNNAC 5 cut(s) 37, 376, 421, 490, 512
HpyAV CCTTC 1 cut(s) 485
HpyCH4III ACNGT 4 cut(s) 134, 247, 316, 353
HpyCH4V TGCA 2 cut(s) 303, 404
HpyF10VI GCNNNNNNNGC 2 cut(s) 86, 223
HpyF3I CTNAG 3 cut(s) 208, 218, 332
Hsp92II CATG 2 cut(s) 80, 404
Ksp22I TGATCA 1 cut(s) 15
KspAI GTTAAC 1 cut(s) 421
Kzo9I GATC 6 cut(s) 15, 70, 94, 187, 240, 395
LpnPI CCDG 7 cut(s) 204, 344, 378, 405, 446, 473, 512
Lsp1109I GCAGC 3 cut(s) 226, 439, 442
LweI GCATC 1 cut(s) 76
MalI GATC 6 cut(s) 17, 72, 96, 189, 242, 397
MboI GATC 6 cut(s) 15, 70, 94, 187, 240, 395
MboII GAAGA 2 cut(s) 80, 422
MflI RGATCY 3 cut(s) 70, 187, 395
MhlI GDGCHC 1 cut(s) 198
MluCI AATT 1 cut(s) 153
MnlI CCTC 4 cut(s) 108, 226, 369, 372
MseI TTAA 3 cut(s) 339, 381, 420
MslI CAYNNNNRTG 1 cut(s) 405
MspR9I CCNGG 2 cut(s) 393, 461
MvaI CCWGG 2 cut(s) 393, 461
MwoI GCNNNNNNNGC 2 cut(s) 86, 223
NdeII GATC 6 cut(s) 15, 70, 94, 187, 240, 395
NlaIII CATG 2 cut(s) 80, 404
PfeI GAWTC 3 cut(s) 236, 413, 466
PflMI CCANNNNNTGG 1 cut(s) 487
PfoI TCCNGGA 1 cut(s) 391
PkrI GCNGC 3 cut(s) 216, 454, 457
PsiI TTATAA 1 cut(s) 369
Psp6I CCWGG 2 cut(s) 391, 459
PspFI CCCAGC 1 cut(s) 7
PspGI CCWGG 2 cut(s) 391, 459
PsuI RGATCY 3 cut(s) 70, 187, 395
RseI CAYNNNNRTG 1 cut(s) 405
SaqAI TTAA 3 cut(s) 339, 381, 420
SatI GCNGC 3 cut(s) 215, 453, 456
Sau3AI GATC 6 cut(s) 15, 70, 94, 187, 240, 395
ScrFI CCNGG 2 cut(s) 393, 461
SduI GDGCHC 1 cut(s) 198
SetI ASST 5 cut(s) 219, 261, 325, 375, 477
SfaNI GCATC 1 cut(s) 76
SmiMI CAYNNNNRTG 1 cut(s) 405
Sse9I AATT 1 cut(s) 153
StyD4I CCNGG 2 cut(s) 391, 459
TaaI ACNGT 4 cut(s) 134, 247, 316, 353
TaqI TCGA 2 cut(s) 102, 239
TaqII GACCGA 1 cut(s) 251
TasI AATT 1 cut(s) 153
TfiI GAWTC 3 cut(s) 236, 413, 466
Tru1I TTAA 3 cut(s) 339, 381, 420
Tru9I TTAA 3 cut(s) 339, 381, 420
TscAI CASTG 5 cut(s) 70, 137, 321, 356, 514
TseI GCWGC 3 cut(s) 214, 452, 455
TspDTI ATGAA 1 cut(s) 423
TspRI CASTG 5 cut(s) 70, 137, 321, 356, 514
Van91I CCANNNNNTGG 1 cut(s) 487
XapI RAATTY 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.