Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006153.1

Orthogroup ID

OG0011777

Physical Location & Seq

Genomic Coordinates Reverse (-)

21591 .. 23172

Gene Structure 1582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006153.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

atggtaaatttcgtgagggatataagagatccggagcatccgtactcgttagagcagctcagcgtgctttccgaggagtccatcaccgtcgacgacaagcttggccggattctgattacgttcacgccgaccattcagcattgcagtatggcaacagtgataggactatgcctgagagttaaactcaagcaatgtttccctcctcattacaaggttgacattaaggtatctccaggatctcatgcagatgaagaatcagttaataagcagttgaatgataaagaacgagttgctgctgccctggagaatcctaaccttcgccaacttgtggatgagtgcctctattccagtgaactgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FeS_assembly_P

Protein Analysis

119

Amino Acids

13.48

Weight (kDa)

5.29

Isoelectric Point (pI)

45.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011777)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50845
fragaria_vesca	FvH4_1g13320 FvH4_1g13320 FvH4_1g13320
malus_domestica	MD02G1148000.v1.1 MD11G1309300.v1.1
prunus_persica	Prupe.7G154400_v2.0.a1 Prupe.7G154400_v2.0.a1
pyrus_communis	pycom02g11670
rosa_chinensis	RchiOBHm_Chr2g0101601
rosa_laevigata	RLG00000017093
rosa_multiflora	Rmu_sc0006153.1_g000005
rosa_roxburghii	Rroxscaffold_2G00141160
rosa_rugosa	Rorug02G0101000
rosa_samantha	Rh2AG148300 Rh2BG153700 Rh2CG154100 Rh2DG154100
rosa_wichuraiana	Rw2G011570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	328
AccI	GTMKAC	1 cut(s)	90
AccIII	TCCGGA	1 cut(s)	31
AclWI	GGATC	2 cut(s)	23, 244
AcoI	YGGCCR	1 cut(s)	103
AcsI	RAATTY	1 cut(s)	7
AfaI	GTAC	1 cut(s)	44
AfiI	CCNNNNNNNGG	1 cut(s)	328
AgsI	TTSAA	1 cut(s)	274
AjnI	CCWGG	2 cut(s)	232, 300
AluBI	AGCT	2 cut(s)	58, 100
AluI	AGCT	2 cut(s)	58, 100
AlwI	GGATC	2 cut(s)	23, 244
Aor13HI	TCCGGA	1 cut(s)	31
AoxI	GGCC	1 cut(s)	103
ApeKI	GCWGC	3 cut(s)	55, 293, 296
ApoI	RAATTY	1 cut(s)	7
AsuHPI	GGTGA	1 cut(s)	76
BbvI	GCAGC	3 cut(s)	67, 280, 283
BccI	CCATC	1 cut(s)	89
BciT130I	CCWGG	2 cut(s)	234, 302
BisI	GCNGC	3 cut(s)	56, 294, 297
BlpI	GCTNAGC	1 cut(s)	59
BlsI	GCNGC	3 cut(s)	57, 295, 298
Bme1390I	CCNGG	2 cut(s)	234, 302
BmrFI	CCNGG	2 cut(s)	234, 302
BmsI	GCATC	1 cut(s)	46
BplI	GAGNNNNNCTC	2 cut(s)	168, 200
BpmI	CTGGAG	2 cut(s)	216, 323
Bpu1102I	GCTNAGC	1 cut(s)	59
BpuEI	CTTGAG	1 cut(s)	170
BsaJI	CCNNGG	2 cut(s)	72, 300
BsaWI	WCCGGW	1 cut(s)	31
BsaXI	ACNNNNNCTCC	2 cut(s)	26, 56
Bsc4I	CCNNNNNNNGG	1 cut(s)	328
Bse1I	ACTGG	1 cut(s)	348
Bse3DI	GCAATG	2 cut(s)	139, 197
BseAI	TCCGGA	1 cut(s)	31
BseBI	CCWGG	2 cut(s)	234, 302
BseDI	CCNNGG	2 cut(s)	72, 300
BseGI	GGATG	2 cut(s)	37, 337
BseLI	CCNNNNNNNGG	1 cut(s)	328
BseMI	GCAATG	2 cut(s)	139, 197
BseMII	CTCAG	2 cut(s)	73, 164
BseNI	ACTGG	1 cut(s)	348
BseRI	GAGGAG	2 cut(s)	89, 192
BseXI	GCAGC	3 cut(s)	67, 280, 283
BshFI	GGCC	1 cut(s)	105
BsiSI	CCGG	2 cut(s)	32, 106
BslI	CCNNNNNNNGG	1 cut(s)	328
BsnI	GGCC	1 cut(s)	105
Bsp13I	TCCGGA	1 cut(s)	31
Bsp143I	GATC	2 cut(s)	28, 236
Bsp1720I	GCTNAGC	1 cut(s)	59
BspANI	GGCC	1 cut(s)	105
BspCNI	CTCAG	2 cut(s)	72, 165
BspEI	TCCGGA	1 cut(s)	31
BspPI	GGATC	2 cut(s)	23, 244
BsrDI	GCAATG	2 cut(s)	139, 197
BsrI	ACTGG	1 cut(s)	348
BssECI	CCNNGG	2 cut(s)	72, 300
BssMI	GATC	2 cut(s)	28, 236
Bst2UI	CCWGG	2 cut(s)	234, 302
Bst4CI	ACNGT	3 cut(s)	88, 157, 357
BstC8I	GCNNGC	1 cut(s)	65
BstDEI	CTNAG	2 cut(s)	59, 173
BstF5I	GGATG	2 cut(s)	37, 337
BstKTI	GATC	2 cut(s)	31, 239
BstMBI	GATC	2 cut(s)	28, 236
BstMWI	GCNNNNNNNGC	1 cut(s)	64
BstNI	CCWGG	2 cut(s)	234, 302
BstSCI	CCNGG	2 cut(s)	232, 300
BstV1I	GCAGC	3 cut(s)	67, 280, 283
BstX2I	RGATCY	2 cut(s)	28, 236
BstYI	RGATCY	2 cut(s)	28, 236
BsuRI	GGCC	1 cut(s)	105
BtsCI	GGATG	2 cut(s)	37, 337
BtsIMutI	CAGTG	2 cut(s)	162, 355
Cac8I	GCNNGC	1 cut(s)	65
Csp6I	GTAC	1 cut(s)	43
CviAII	CATG	1 cut(s)	242
CviJI	RGCY	3 cut(s)	58, 100, 105
CviKI_1	RGCY	3 cut(s)	58, 100, 105
CviQI	GTAC	1 cut(s)	43
DdeI	CTNAG	2 cut(s)	59, 173
DpnI	GATC	2 cut(s)	30, 238
DpnII	GATC	2 cut(s)	28, 236
EaeI	YGGCCR	1 cut(s)	103
EcoRII	CCWGG	2 cut(s)	232, 300
FaeI	CATG	1 cut(s)	245
FaiI	YATR	4 cut(s)	23, 149, 169, 243
FatI	CATG	1 cut(s)	241
FblI	GTMKAC	1 cut(s)	90
Fnu4HI	GCNGC	3 cut(s)	56, 294, 297
FokI	GGATG	2 cut(s)	24, 344
Fsp4HI	GCNGC	3 cut(s)	56, 294, 297
GluI	GCNGC	3 cut(s)	56, 294, 297
GsuI	CTGGAG	2 cut(s)	216, 323
HaeIII	GGCC	1 cut(s)	105
HapII	CCGG	2 cut(s)	32, 106
Hin1II	CATG	1 cut(s)	245
HincII	GTYRAC	2 cut(s)	91, 217
HindII	GTYRAC	2 cut(s)	91, 217
HindIII	AAGCTT	1 cut(s)	98
HinfI	GANTC	4 cut(s)	77, 109, 254, 307
HpaII	CCGG	2 cut(s)	32, 106
HphI	GGTGA	1 cut(s)	76
Hpy166II	GTNNAC	4 cut(s)	91, 123, 217, 353
Hpy188I	TCNGA	2 cut(s)	73, 114
Hpy188III	TCNNGA	2 cut(s)	13, 32
Hpy8I	GTNNAC	4 cut(s)	91, 123, 217, 353
Hpy99I	CGWCG	2 cut(s)	92, 95
HpyAV	CCTTC	1 cut(s)	326
HpyCH4III	ACNGT	3 cut(s)	88, 157, 357
HpyCH4IV	ACGT	1 cut(s)	119
HpyCH4V	TGCA	2 cut(s)	144, 245
HpyF10VI	GCNNNNNNNGC	1 cut(s)	64
HpyF3I	CTNAG	2 cut(s)	59, 173
HpySE526I	ACGT	1 cut(s)	119
Hsp92II	CATG	1 cut(s)	245
Kpn2I	TCCGGA	1 cut(s)	31
Kzo9I	GATC	2 cut(s)	28, 236
LmnI	GCTCC	1 cut(s)	34
LpnPI	CCDG	7 cut(s)	45, 119, 185, 219, 246, 287, 314
Lsp1109I	GCAGC	3 cut(s)	67, 280, 283
LweI	GCATC	1 cut(s)	46
MaeII	ACGT	1 cut(s)	119
MalI	GATC	2 cut(s)	30, 238
MboI	GATC	2 cut(s)	28, 236
MboII	GAAGA	1 cut(s)	263
MflI	RGATCY	2 cut(s)	28, 236
MluCI	AATT	1 cut(s)	7
MlyI	GAGTC	1 cut(s)	86
MnlI	CCTC	5 cut(s)	9, 67, 210, 213, 350
MroI	TCCGGA	1 cut(s)	31
MseI	TTAA	3 cut(s)	180, 222, 261
MslI	CAYNNNNRTG	1 cut(s)	246
MspI	CCGG	2 cut(s)	32, 106
MspR9I	CCNGG	2 cut(s)	234, 302
MvaI	CCWGG	2 cut(s)	234, 302
MwoI	GCNNNNNNNGC	1 cut(s)	64
NdeII	GATC	2 cut(s)	28, 236
NlaIII	CATG	1 cut(s)	245
PcsI	WCGNNNNNNNCGW	1 cut(s)	125
PfeI	GAWTC	3 cut(s)	109, 254, 307
PflMI	CCANNNNNTGG	1 cut(s)	328
PfoI	TCCNGGA	1 cut(s)	232
PkrI	GCNGC	3 cut(s)	57, 295, 298
PleI	GAGTC	1 cut(s)	85
PpsI	GAGTC	1 cut(s)	85
Psp6I	CCWGG	2 cut(s)	232, 300
PspGI	CCWGG	2 cut(s)	232, 300
PsuI	RGATCY	2 cut(s)	28, 236
RsaI	GTAC	1 cut(s)	44
RsaNI	GTAC	1 cut(s)	43
RseI	CAYNNNNRTG	1 cut(s)	246
SalI	GTCGAC	1 cut(s)	89
SaqAI	TTAA	3 cut(s)	180, 222, 261
SatI	GCNGC	3 cut(s)	56, 294, 297
Sau3AI	GATC	2 cut(s)	28, 236
SchI	GAGTC	1 cut(s)	86
ScrFI	CCNGG	2 cut(s)	234, 302
SetI	ASST	6 cut(s)	60, 102, 122, 216, 228, 318
SfaNI	GCATC	1 cut(s)	46
SgrDI	CGTCGACG	1 cut(s)	89
SmiMI	CAYNNNNRTG	1 cut(s)	246
SmlI	CTYRAG	1 cut(s)	185
SmoI	CTYRAG	1 cut(s)	185
Sse9I	AATT	1 cut(s)	7
StyD4I	CCNGG	2 cut(s)	232, 300
TaaI	ACNGT	3 cut(s)	88, 157, 357
TaiI	ACGT	1 cut(s)	122
TaqI	TCGA	1 cut(s)	90
TasI	AATT	1 cut(s)	7
TfiI	GAWTC	3 cut(s)	109, 254, 307
Tru1I	TTAA	3 cut(s)	180, 222, 261
Tru9I	TTAA	3 cut(s)	180, 222, 261
TscAI	CASTG	2 cut(s)	162, 355
TseI	GCWGC	3 cut(s)	55, 293, 296
TspDTI	ATGAA	1 cut(s)	264
TspGWI	ACGGA	1 cut(s)	30
TspRI	CASTG	2 cut(s)	162, 355
Van91I	CCANNNNNTGG	1 cut(s)	328
XapI	RAATTY	1 cut(s)	7
XmiI	GTMKAC	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.