Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0011777

Physical Location & Seq

Genomic Coordinates Forward (+)

8586411 .. 8586836

Gene Structure 426 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0101000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGCTTCTCTTCGCAAATCGGCTCCCTGTCCTACCAAAGCAGGTAACTACATCGATCTTTCTGCTGAAACCCTCAACTATTATGATGGTGATGAAGACCTTAGGGTTCTTAGGTTCAAACCCTCCAACACTCCTTTCGGAAAGCGAAGAAAAACCCTAAATAAGGGTTCTTCTTCCAATTCCGAACCCAAGAACGAAGACTCATCTTTTGTCTGTGAAATTTGCGTTGAGACCAAGTTCGGCAACGAGTCCTTTGGTATCAAAAATTGCAGCCATGTTTATTGTACTTATTGTGTTGTCAATTACGTGAACTCCAAGCTCCAAGAAAATGTTACAAGCATTGGATGCCCTGTTCCTGATTGCAAAGGGTCACTTGACCCCGAGTATTGCCGGTCAATTCTGAAGCCCGAGGTGTTTGAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FeS_assembly_P

Protein Analysis

141

Amino Acids

15.74

Weight (kDa)

7.45

Isoelectric Point (pI)

50.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011777)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50845
fragaria_vesca	FvH4_1g13320 FvH4_1g13320 FvH4_1g13320
malus_domestica	MD02G1148000.v1.1 MD11G1309300.v1.1
prunus_persica	Prupe.7G154400_v2.0.a1 Prupe.7G154400_v2.0.a1
pyrus_communis	pycom02g11670
rosa_chinensis	RchiOBHm_Chr2g0101601
rosa_laevigata	RLG00000017093
rosa_multiflora	Rmu_sc0006153.1_g000005
rosa_roxburghii	Rroxscaffold_2G00141160
rosa_rugosa	Rorug02G0101000
rosa_samantha	Rh2AG148300 Rh2BG153700 Rh2CG154100 Rh2DG154100
rosa_wichuraiana	Rw2G011570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	32
AcsI	RAATTY	1 cut(s)	219
AcuI	CTGAAG	1 cut(s)	422
AfaI	GTAC	1 cut(s)	286
AfiI	CCNNNNNNNGG	1 cut(s)	163
AgsI	TTSAA	1 cut(s)	118
AjuI	GAANNNNNNNTTGG	2 cut(s)	119, 151
AloI	GAACNNNNNNTCC	2 cut(s)	336, 368
AluBI	AGCT	1 cut(s)	319
AluI	AGCT	1 cut(s)	319
Alw26I	GTCTC	1 cut(s)	224
Ama87I	CYCGRG	2 cut(s)	380, 407
ApeKI	GCWGC	1 cut(s)	270
ApoI	RAATTY	1 cut(s)	219
ArsI	GACNNNNNNTTYG	2 cut(s)	191, 223
AsuHPI	GGTGA	1 cut(s)	101
AvaI	CYCGRG	2 cut(s)	380, 407
AxyI	CCTNAGG	1 cut(s)	101
BbsI	GAAGAC	2 cut(s)	102, 204
BbvI	GCAGC	1 cut(s)	282
BccI	CCATC	1 cut(s)	80
BcgI	CGANNNNNNTGC	2 cut(s)	44, 78
BcoDI	GTCTC	1 cut(s)	224
BfuAI	ACCTGC	1 cut(s)	32
BisI	GCNGC	1 cut(s)	271
BlsI	GCNGC	1 cut(s)	272
BmeT110I	CYCGRG	2 cut(s)	380, 407
BmiI	GGNNCC	1 cut(s)	24
BmsI	GCATC	1 cut(s)	335
BpiI	GAAGAC	2 cut(s)	102, 204
Bsa29I	ATCGAT	1 cut(s)	54
BsaAI	YACGTR	1 cut(s)	307
BsaI	GGTCTC	1 cut(s)	224
BsaJI	CCNNGG	1 cut(s)	408
BsaXI	ACNNNNNCTCC	2 cut(s)	296, 326
Bsc4I	CCNNNNNNNGG	1 cut(s)	163
Bse118I	RCCGGY	1 cut(s)	390
Bse21I	CCTNAGG	1 cut(s)	101
BseCI	ATCGAT	1 cut(s)	54
BseDI	CCNNGG	1 cut(s)	408
BseGI	GGATG	1 cut(s)	350
BseLI	CCNNNNNNNGG	1 cut(s)	163
BseXI	GCAGC	1 cut(s)	282
BshVI	ATCGAT	1 cut(s)	54
BsiHKCI	CYCGRG	2 cut(s)	380, 407
BsiSI	CCGG	1 cut(s)	391
BslI	CCNNNNNNNGG	1 cut(s)	163
BsmAI	GTCTC	1 cut(s)	224
Bso31I	GGTCTC	1 cut(s)	224
BsoBI	CYCGRG	2 cut(s)	380, 407
Bsp143I	GATC	1 cut(s)	55
BspDI	ATCGAT	1 cut(s)	54
BspLI	GGNNCC	1 cut(s)	24
BspMI	ACCTGC	1 cut(s)	32
BspTNI	GGTCTC	1 cut(s)	224
BsrFI	RCCGGY	1 cut(s)	390
BssAI	RCCGGY	1 cut(s)	390
BssECI	CCNNGG	1 cut(s)	408
BssMI	GATC	1 cut(s)	55
Bst6I	CTCTTC	1 cut(s)	15
BstAPI	GCANNNNNTGC	1 cut(s)	345
BstBAI	YACGTR	1 cut(s)	307
BstDEI	CTNAG	2 cut(s)	101, 110
BstENI	CCTNNNNNAGG	1 cut(s)	161
BstF5I	GGATG	1 cut(s)	350
BstKTI	GATC	1 cut(s)	58
BstMAI	GTCTC	1 cut(s)	224
BstMBI	GATC	1 cut(s)	55
BstMWI	GCNNNNNNNGC	1 cut(s)	345
BstV1I	GCAGC	1 cut(s)	282
BstV2I	GAAGAC	2 cut(s)	102, 204
Bsu15I	ATCGAT	1 cut(s)	54
Bsu36I	CCTNAGG	1 cut(s)	101
BsuTUI	ATCGAT	1 cut(s)	54
BtsCI	GGATG	1 cut(s)	350
BveI	ACCTGC	1 cut(s)	32
Cfr10I	RCCGGY	1 cut(s)	390
ClaI	ATCGAT	1 cut(s)	54
Csp6I	GTAC	1 cut(s)	285
CviAII	CATG	1 cut(s)	275
CviJI	RGCY	5 cut(s)	5, 23, 273, 319, 406
CviKI_1	RGCY	5 cut(s)	5, 23, 273, 319, 406
CviQI	GTAC	1 cut(s)	285
DdeI	CTNAG	2 cut(s)	101, 110
DpnI	GATC	1 cut(s)	57
DpnII	GATC	1 cut(s)	55
Eam1104I	CTCTTC	1 cut(s)	15
EarI	CTCTTC	1 cut(s)	15
Eco31I	GGTCTC	1 cut(s)	224
Eco57I	CTGAAG	1 cut(s)	422
Eco81I	CCTNAGG	1 cut(s)	101
Eco88I	CYCGRG	2 cut(s)	380, 407
EcoNI	CCTNNNNNAGG	1 cut(s)	161
FaeI	CATG	1 cut(s)	278
FaiI	YATR	2 cut(s)	84, 276
FalI	AAGNNNNNCTT	2 cut(s)	357, 389
FatI	CATG	1 cut(s)	274
Fnu4HI	GCNGC	1 cut(s)	271
FokI	GGATG	1 cut(s)	357
Fsp4HI	GCNGC	1 cut(s)	271
GluI	GCNGC	1 cut(s)	271
HapII	CCGG	1 cut(s)	391
Hin1II	CATG	1 cut(s)	278
HinfI	GANTC	2 cut(s)	200, 248
HpaII	CCGG	1 cut(s)	391
HphI	GGTGA	1 cut(s)	101
Hpy166II	GTNNAC	1 cut(s)	310
Hpy188I	TCNGA	3 cut(s)	140, 184, 402
Hpy188III	TCNNGA	1 cut(s)	356
Hpy8I	GTNNAC	1 cut(s)	310
HpyCH4IV	ACGT	1 cut(s)	306
HpyCH4V	TGCA	2 cut(s)	270, 363
HpyF10VI	GCNNNNNNNGC	1 cut(s)	345
HpyF3I	CTNAG	2 cut(s)	101, 110
HpySE526I	ACGT	1 cut(s)	306
Hsp92II	CATG	1 cut(s)	278
Kzo9I	GATC	1 cut(s)	55
LmnI	GCTCC	2 cut(s)	28, 324
LpnPI	CCDG	5 cut(s)	27, 40, 363, 369, 404
Lsp1109I	GCAGC	1 cut(s)	282
LweI	GCATC	1 cut(s)	335
MaeII	ACGT	1 cut(s)	306
MaeIII	GTNAC	3 cut(s)	44, 331, 369
MalI	GATC	1 cut(s)	57
MboI	GATC	1 cut(s)	55
MboII	GAAGA	5 cut(s)	107, 159, 162, 165, 209
MluCI	AATT	5 cut(s)	178, 219, 265, 301, 396
MlyI	GAGTC	2 cut(s)	194, 257
MmeI	TCCRAC	1 cut(s)	150
MnlI	CCTC	3 cut(s)	83, 133, 403
MspI	CCGG	1 cut(s)	391
MwoI	GCNNNNNNNGC	1 cut(s)	345
NdeII	GATC	1 cut(s)	55
NlaIII	CATG	1 cut(s)	278
NlaIV	GGNNCC	1 cut(s)	24
NmuCI	GTSAC	1 cut(s)	369
PkrI	GCNGC	1 cut(s)	272
PleI	GAGTC	2 cut(s)	194, 256
PpsI	GAGTC	2 cut(s)	194, 256
Ppu21I	YACGTR	1 cut(s)	307
PspN4I	GGNNCC	1 cut(s)	24
RsaI	GTAC	1 cut(s)	286
RsaNI	GTAC	1 cut(s)	285
SatI	GCNGC	1 cut(s)	271
Sau3AI	GATC	1 cut(s)	55
SchI	GAGTC	2 cut(s)	194, 257
SetI	ASST	6 cut(s)	46, 102, 116, 309, 321, 414
SfaNI	GCATC	1 cut(s)	335
Sse9I	AATT	5 cut(s)	178, 219, 265, 301, 396
TaiI	ACGT	1 cut(s)	309
TaqI	TCGA	1 cut(s)	54
TasI	AATT	5 cut(s)	178, 219, 265, 301, 396
TatI	WGTACW	1 cut(s)	284
TseFI	GTSAC	1 cut(s)	369
TseI	GCWGC	1 cut(s)	270
Tsp45I	GTSAC	1 cut(s)	369
TspDTI	ATGAA	1 cut(s)	108
XagI	CCTNNNNNAGG	1 cut(s)	161
XapI	RAATTY	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.