Rw2G011570

MIP18 family protein At1g68310-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0011777
Physical Location & Seq
Forward (+)
11669769 .. 11672075
2307 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G011570.1

Sequence Viewer

Length: 360 bp
ATGGTAAATTTCGTGAGGGATATAAGAGATCCGGAGCATCCGTACTCGTTGGAGCAGCTCAGCGTGCTTTCCGAGGAGTCCATCACCGTCGACGACAAGCTCGGCCGGATTCTGATTACGTTCACGCCGACCATTCAGCATTGCAGTATGGCAACAGTGATAGGACTATGCCTGAGAGTTAAACTCAAGCAATGTTTCCCTCCTCATTACAAGGTTGACATTAAGGTATCTCCAGGATCTCATGCAGATGAAGAATCAGTTAATAAGCAGTTGAATGATAAAGAAAGAGTTGCTGCTGCGCTGGAGAATCCTAACCTTCGCCAACTTGTGGATGAGTGCCTCTATTCCAGTGAACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FeS_assembly_P

Protein Analysis

119

Amino Acids

13.48

Weight (kDa)

5.29

Isoelectric Point (pI)

45.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011777)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G50845
fragaria_vesca FvH4_1g13320 FvH4_1g13320 FvH4_1g13320
malus_domestica MD02G1148000.v1.1 MD11G1309300.v1.1
prunus_persica Prupe.7G154400_v2.0.a1 Prupe.7G154400_v2.0.a1
pyrus_communis pycom02g11670
rosa_chinensis RchiOBHm_Chr2g0101601
rosa_laevigata RLG00000017093
rosa_multiflora Rmu_sc0006153.1_g000005
rosa_roxburghii Rroxscaffold_2G00141160
rosa_rugosa Rorug02G0101000
rosa_samantha Rh2AG148300 Rh2BG153700 Rh2CG154100 Rh2DG154100
rosa_wichuraiana Rw2G011570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 328
AccI GTMKAC 1 cut(s) 90
AccIII TCCGGA 1 cut(s) 31
AclWI GGATC 2 cut(s) 23, 244
AcoI YGGCCR 1 cut(s) 103
AcsI RAATTY 1 cut(s) 7
AfaI GTAC 1 cut(s) 44
AfiI CCNNNNNNNGG 1 cut(s) 328
AgsI TTSAA 1 cut(s) 274
AjnI CCWGG 1 cut(s) 232
AluBI AGCT 2 cut(s) 58, 100
AluI AGCT 2 cut(s) 58, 100
AlwI GGATC 2 cut(s) 23, 244
Aor13HI TCCGGA 1 cut(s) 31
AoxI GGCC 1 cut(s) 103
ApeKI GCWGC 3 cut(s) 55, 293, 296
ApoI RAATTY 1 cut(s) 7
AspLEI GCGC 1 cut(s) 301
AsuHPI GGTGA 1 cut(s) 76
BbvI GCAGC 3 cut(s) 67, 280, 283
BccI CCATC 1 cut(s) 89
BciT130I CCWGG 1 cut(s) 234
BisI GCNGC 3 cut(s) 56, 294, 297
BlpI GCTNAGC 1 cut(s) 59
BlsI GCNGC 3 cut(s) 57, 295, 298
Bme1390I CCNGG 1 cut(s) 234
BmrFI CCNGG 1 cut(s) 234
BmsI GCATC 1 cut(s) 46
BplI GAGNNNNNCTC 2 cut(s) 168, 200
BpmI CTGGAG 2 cut(s) 216, 323
Bpu1102I GCTNAGC 1 cut(s) 59
BpuEI CTTGAG 1 cut(s) 170
BsaJI CCNNGG 1 cut(s) 72
BsaWI WCCGGW 1 cut(s) 31
BsaXI ACNNNNNCTCC 2 cut(s) 26, 56
Bsc4I CCNNNNNNNGG 1 cut(s) 328
Bse1I ACTGG 1 cut(s) 348
Bse3DI GCAATG 2 cut(s) 139, 197
BseAI TCCGGA 1 cut(s) 31
BseBI CCWGG 1 cut(s) 234
BseDI CCNNGG 1 cut(s) 72
BseGI GGATG 2 cut(s) 37, 337
BseLI CCNNNNNNNGG 1 cut(s) 328
BseMI GCAATG 2 cut(s) 139, 197
BseMII CTCAG 2 cut(s) 73, 164
BseNI ACTGG 1 cut(s) 348
BseRI GAGGAG 2 cut(s) 89, 192
BseX3I CGGCCG 1 cut(s) 103
BseXI GCAGC 3 cut(s) 67, 280, 283
Bsh1285I CGRYCG 1 cut(s) 106
BshFI GGCC 1 cut(s) 105
BsiEI CGRYCG 1 cut(s) 106
BsiSI CCGG 2 cut(s) 32, 106
BslI CCNNNNNNNGG 1 cut(s) 328
BsnI GGCC 1 cut(s) 105
Bsp13I TCCGGA 1 cut(s) 31
Bsp143I GATC 2 cut(s) 28, 236
Bsp1720I GCTNAGC 1 cut(s) 59
BspANI GGCC 1 cut(s) 105
BspCNI CTCAG 2 cut(s) 72, 165
BspEI TCCGGA 1 cut(s) 31
BspPI GGATC 2 cut(s) 23, 244
BsrDI GCAATG 2 cut(s) 139, 197
BsrI ACTGG 1 cut(s) 348
BssECI CCNNGG 1 cut(s) 72
BssMI GATC 2 cut(s) 28, 236
Bst2UI CCWGG 1 cut(s) 234
Bst4CI ACNGT 3 cut(s) 88, 157, 357
BstC8I GCNNGC 1 cut(s) 65
BstDEI CTNAG 2 cut(s) 59, 173
BstF5I GGATG 2 cut(s) 37, 337
BstHHI GCGC 1 cut(s) 301
BstKTI GATC 2 cut(s) 31, 239
BstMBI GATC 2 cut(s) 28, 236
BstMCI CGRYCG 1 cut(s) 106
BstMWI GCNNNNNNNGC 1 cut(s) 64
BstNI CCWGG 1 cut(s) 234
BstSCI CCNGG 1 cut(s) 232
BstV1I GCAGC 3 cut(s) 67, 280, 283
BstX2I RGATCY 2 cut(s) 28, 236
BstYI RGATCY 2 cut(s) 28, 236
BstZI CGGCCG 1 cut(s) 103
BsuRI GGCC 1 cut(s) 105
BtsCI GGATG 2 cut(s) 37, 337
BtsIMutI CAGTG 2 cut(s) 162, 355
Cac8I GCNNGC 1 cut(s) 65
CfoI GCGC 1 cut(s) 301
Csp6I GTAC 1 cut(s) 43
CviAII CATG 1 cut(s) 242
CviJI RGCY 3 cut(s) 58, 100, 105
CviKI_1 RGCY 3 cut(s) 58, 100, 105
CviQI GTAC 1 cut(s) 43
DdeI CTNAG 2 cut(s) 59, 173
DpnI GATC 2 cut(s) 30, 238
DpnII GATC 2 cut(s) 28, 236
EaeI YGGCCR 1 cut(s) 103
EagI CGGCCG 1 cut(s) 103
EclXI CGGCCG 1 cut(s) 103
Eco52I CGGCCG 1 cut(s) 103
EcoRII CCWGG 1 cut(s) 232
FaeI CATG 1 cut(s) 245
FaiI YATR 4 cut(s) 23, 149, 169, 243
FatI CATG 1 cut(s) 241
FblI GTMKAC 1 cut(s) 90
Fnu4HI GCNGC 3 cut(s) 56, 294, 297
FokI GGATG 2 cut(s) 24, 344
Fsp4HI GCNGC 3 cut(s) 56, 294, 297
GlaI GCGC 1 cut(s) 300
GluI GCNGC 3 cut(s) 56, 294, 297
GsuI CTGGAG 2 cut(s) 216, 323
HaeIII GGCC 1 cut(s) 105
HapII CCGG 2 cut(s) 32, 106
HhaI GCGC 1 cut(s) 301
Hin1II CATG 1 cut(s) 245
Hin6I GCGC 1 cut(s) 299
HinP1I GCGC 1 cut(s) 299
HincII GTYRAC 2 cut(s) 91, 217
HindII GTYRAC 2 cut(s) 91, 217
HinfI GANTC 4 cut(s) 77, 109, 254, 307
HpaII CCGG 2 cut(s) 32, 106
HphI GGTGA 1 cut(s) 76
Hpy166II GTNNAC 4 cut(s) 91, 123, 217, 353
Hpy188I TCNGA 2 cut(s) 73, 114
Hpy188III TCNNGA 2 cut(s) 13, 32
Hpy8I GTNNAC 4 cut(s) 91, 123, 217, 353
Hpy99I CGWCG 2 cut(s) 92, 95
HpyAV CCTTC 1 cut(s) 326
HpyCH4III ACNGT 3 cut(s) 88, 157, 357
HpyCH4IV ACGT 1 cut(s) 119
HpyCH4V TGCA 2 cut(s) 144, 245
HpyF10VI GCNNNNNNNGC 1 cut(s) 64
HpyF3I CTNAG 2 cut(s) 59, 173
HpySE526I ACGT 1 cut(s) 119
Hsp92II CATG 1 cut(s) 245
HspAI GCGC 1 cut(s) 299
Kpn2I TCCGGA 1 cut(s) 31
Kzo9I GATC 2 cut(s) 28, 236
LmnI GCTCC 2 cut(s) 34, 52
LpnPI CCDG 6 cut(s) 45, 119, 185, 219, 246, 287
Lsp1109I GCAGC 3 cut(s) 67, 280, 283
LweI GCATC 1 cut(s) 46
MaeII ACGT 1 cut(s) 119
MalI GATC 2 cut(s) 30, 238
MboI GATC 2 cut(s) 28, 236
MboII GAAGA 1 cut(s) 263
MflI RGATCY 2 cut(s) 28, 236
MluCI AATT 1 cut(s) 7
MlyI GAGTC 1 cut(s) 86
MmeI TCCRAC 1 cut(s) 30
MnlI CCTC 5 cut(s) 9, 67, 210, 213, 350
MroI TCCGGA 1 cut(s) 31
MseI TTAA 3 cut(s) 180, 222, 261
MslI CAYNNNNRTG 1 cut(s) 246
MspI CCGG 2 cut(s) 32, 106
MspR9I CCNGG 1 cut(s) 234
MvaI CCWGG 1 cut(s) 234
MwoI GCNNNNNNNGC 1 cut(s) 64
NdeII GATC 2 cut(s) 28, 236
NlaIII CATG 1 cut(s) 245
NmeAIII GCCGAG 1 cut(s) 81
PcsI WCGNNNNNNNCGW 1 cut(s) 125
PfeI GAWTC 3 cut(s) 109, 254, 307
PflMI CCANNNNNTGG 1 cut(s) 328
PfoI TCCNGGA 1 cut(s) 232
PkrI GCNGC 3 cut(s) 57, 295, 298
PleI GAGTC 1 cut(s) 85
PpsI GAGTC 1 cut(s) 85
Psp6I CCWGG 1 cut(s) 232
PspGI CCWGG 1 cut(s) 232
PsuI RGATCY 2 cut(s) 28, 236
RsaI GTAC 1 cut(s) 44
RsaNI GTAC 1 cut(s) 43
RseI CAYNNNNRTG 1 cut(s) 246
SalI GTCGAC 1 cut(s) 89
SaqAI TTAA 3 cut(s) 180, 222, 261
SatI GCNGC 3 cut(s) 56, 294, 297
Sau3AI GATC 2 cut(s) 28, 236
SchI GAGTC 1 cut(s) 86
ScrFI CCNGG 1 cut(s) 234
SetI ASST 6 cut(s) 60, 102, 122, 216, 228, 318
SfaNI GCATC 1 cut(s) 46
SgrDI CGTCGACG 1 cut(s) 89
SmiMI CAYNNNNRTG 1 cut(s) 246
SmlI CTYRAG 1 cut(s) 185
SmoI CTYRAG 1 cut(s) 185
Sse9I AATT 1 cut(s) 7
StyD4I CCNGG 1 cut(s) 232
TaaI ACNGT 3 cut(s) 88, 157, 357
TaiI ACGT 1 cut(s) 122
TaqI TCGA 1 cut(s) 90
TasI AATT 1 cut(s) 7
TfiI GAWTC 3 cut(s) 109, 254, 307
Tru1I TTAA 3 cut(s) 180, 222, 261
Tru9I TTAA 3 cut(s) 180, 222, 261
TscAI CASTG 2 cut(s) 162, 355
TseI GCWGC 3 cut(s) 55, 293, 296
TspDTI ATGAA 1 cut(s) 264
TspGWI ACGGA 1 cut(s) 30
TspRI CASTG 2 cut(s) 162, 355
Van91I CCANNNNNTGG 1 cut(s) 328
XapI RAATTY 1 cut(s) 7
XmiI GTMKAC 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.