Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010423

Physical Location & Seq

Genomic Coordinates Forward (+)

18919327 .. 18922301

Gene Structure 2975 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G50910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1344 bp

ATGCCTACTTTTTCTGCTATTGCTTTGGATAGAATGCTAGAGCCAGGGGCTTCCACGTCTGTCGAGAGTGTTCCAAGCACAACTAATTTGTTTTATTCAAAGCCACCGATATCAAAACTGGAGAAAGGTAAAGGTAAATTACCTAATGAGAGGACAGTTACTCGTCCTCTGATGTCACCTGCTCTCTACGCCACACCTGATGCGATTCCGCTTCCTAATTCGCCATCGTCTTTCCCACCGTCGCCTTATATCATCAACCACAAATCACGTGGACCTCCACGTCTTCTTAAAAGCTCTTCTGAGGCTAATGTTGTGTCTTCTTCCCACCAGAAGACGCTGGAAGAGGAAACTATTACTGCTGAAACAGATGTAAAGGTTTCCCCTCGGAGGAGGTCCACTTCCTTCTCGTTTCCTATCACTGAGGTTACTGAAGATGATTATTCCAATGGAGTTCATGCTCGTACGGTTGGAAACTATAATTTTGATGGTATTGTTGATGGTCCTGTTGGAAATTGGAGTCCGCTTGATGGGAAAAGTGGGAATGGGAAGTCAGAGTTGGATAACGCTGCTAATGGTTTAGAACGGGTAAATGGTCTGTCTGAGCCAGTCCCTATTAAAACAGACAAGGAGAGTGAGTCAGAAGATTTCTATGACCCAGGTGAATCAGCAAGCTTCACAAGTAACACAGACGTAGAGGGTGATGCTGGGGACGAAAGTTCACAAAGACTTGCCACACCTGTGGGAGAGTTTTATGATGCTTGGGATGAACTATCAACCGACAGTGGAATGCAGAGTTCAGTTAATAACATCGAATCTGAATTAAGTGAGATAAGGCTGAGTTTACTAATGGAAATCGAGAAGAGAAAACAGACAGAGGAGGCTTTGGAGCAGATGCAAATTCACTGGCAGAGACTCCGTGAGCAGATGGCTCAGGTGGGTCTGTTCGTTCCTATTGATCCTACCGCCTCCACCAACAACATGAATCTATCAGAAGAACTACGCTGTCAACTCGAGATTGCGAGGTTTGTCTCTGACTCTTTAGGCAGAGGTATGGCAAAGGCCGAGGTAGAGATGGAGATGGAATCTATGCTCGAAACTAAGAACTTTGAAATCACACGGTTGTCTGACCGTCTACACTACTACGAGGCCGTGAACAGAGAGATGTCTCAACGAAACCAAGAAGCCATAGAGGTGGCACGACGAGAGAGGCAGAAGAGAAAGAAGAGGCAGAGATGGATTTGGGGATCAATTGCAGCAACCATTACTCTAGGAAGCGCGGCATTGGCATGGTCTTACATTCCTGCAGCCAAACCATCATCTGAAGTATCTCTTAAGGATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

447

Amino Acids

49.64

Weight (kDa)

4.94

Isoelectric Point (pI)

58.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010423)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50910 AT5G66480
fragaria_vesca	FvH4_1g12900 FvH4_1g12900
malus_domestica	MD02G1143900.v1.1 MD15G1257200.v1.1
prunus_persica	Prupe.7G157800_v2.0.a1
pyrus_communis	pycom02g11380 pycom15g22510
rosa_chinensis	RchiOBHm_Chr2g0100981
rosa_laevigata	RLG00000017033
rosa_multiflora	Rmu_co8514483.1_g000001 Rmu_sc0001862.1_g000011
rosa_roxburghii	Rroxscaffold_2G00141680
rosa_rugosa	Rorug02G0094700 Rorug02G0094800
rosa_samantha	Rh2AG141900 Rh2BG147100 Rh2CG148400 Rh2DG147600
rosa_wichuraiana	Rw2G011140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	187
AasI	GACNNNNNNGTC	1 cut(s)	279
Acc36I	ACCTGC	1 cut(s)	187
AccI	GTMKAC	1 cut(s)	1132
AccII	CGCG	1 cut(s)	1277
AciI	CCGC	4 cut(s)	209, 521, 963, 1277
AclWI	GGATC	2 cut(s)	950, 1252
AcsI	RAATTY	1 cut(s)	897
AcuI	CTGAAG	2 cut(s)	450, 1341
AcvI	CACGTG	1 cut(s)	269
AfaI	GTAC	1 cut(s)	463
AfiI	CCNNNNNNNGG	2 cut(s)	387, 527
AflII	CTTAAG	1 cut(s)	1331
AgsI	TTSAA	2 cut(s)	99, 1109
AjiI	CACGTC	2 cut(s)	57, 281
AjnI	CCWGG	2 cut(s)	43, 655
AjuI	GAANNNNNNNTTGG	2 cut(s)	539, 571
AleI	CACNNNNGTG	1 cut(s)	737
AluBI	AGCT	2 cut(s)	294, 672
AluI	AGCT	2 cut(s)	294, 672
Alw26I	GTCTC	3 cut(s)	904, 1033, 1170
AlwI	GGATC	2 cut(s)	950, 1252
Ama87I	CYCGRG	1 cut(s)	1010
AoxI	GGCC	2 cut(s)	1059, 1146
ApeKI	GCWGC	3 cut(s)	566, 1253, 1304
ApoI	RAATTY	1 cut(s)	897
AspLEI	GCGC	1 cut(s)	1277
AspS9I	GGNCC	3 cut(s)	272, 393, 500
AsuHPI	GGTGA	3 cut(s)	168, 671, 710
AvaI	CYCGRG	1 cut(s)	1010
AvaII	GGWCC	3 cut(s)	272, 393, 500
BbrPI	CACGTG	1 cut(s)	269
BbsI	GAAGAC	3 cut(s)	275, 309, 338
BbvI	GCAGC	3 cut(s)	553, 1265, 1316
BccI	CCATC	9 cut(s)	232, 479, 491, 521, 919, 1066, 1072, 1227, 1321
BceAI	ACGGC	1 cut(s)	1133
BciT130I	CCWGG	2 cut(s)	45, 657
BcoDI	GTCTC	3 cut(s)	904, 1033, 1170
BfaI	CTAG	2 cut(s)	38, 1268
BfmI	CTRYAG	1 cut(s)	1302
BfrI	CTTAAG	1 cut(s)	1331
BfuAI	ACCTGC	1 cut(s)	187
BisI	GCNGC	4 cut(s)	567, 1254, 1278, 1305
BlsI	GCNGC	4 cut(s)	568, 1255, 1279, 1306
Bme1390I	CCNGG	2 cut(s)	45, 657
Bme18I	GGWCC	3 cut(s)	272, 393, 500
BmeT110I	CYCGRG	1 cut(s)	1010
BmgBI	CACGTC	2 cut(s)	57, 281
BmgT120I	GGNCC	3 cut(s)	272, 393, 500
BmrFI	CCNGG	2 cut(s)	45, 657
BmsI	GCATC	4 cut(s)	190, 691, 745, 882
BpiI	GAAGAC	3 cut(s)	275, 309, 338
BpmI	CTGGAG	1 cut(s)	140
Bpu10I	CCTNAGC	1 cut(s)	930
BsaAI	YACGTR	1 cut(s)	269
BsaJI	CCNNGG	4 cut(s)	44, 383, 655, 1062
BsaXI	ACNNNNNCTCC	2 cut(s)	620, 650
Bsc4I	CCNNNNNNNGG	2 cut(s)	387, 527
Bse1I	ACTGG	3 cut(s)	123, 605, 908
BseBI	CCWGG	2 cut(s)	45, 657
BseDI	CCNNGG	4 cut(s)	44, 383, 655, 1062
BseGI	GGATG	2 cut(s)	769, 1342
BseLI	CCNNNNNNNGG	2 cut(s)	387, 527
BseMII	CTCAG	5 cut(s)	291, 411, 591, 827, 944
BseNI	ACTGG	3 cut(s)	123, 605, 908
BseRI	GAGGAG	2 cut(s)	403, 890
BseXI	GCAGC	3 cut(s)	553, 1265, 1316
BseYI	CCCAGC	1 cut(s)	704
Bsh1236I	CGCG	1 cut(s)	1277
BshFI	GGCC	2 cut(s)	1061, 1148
BsiHKCI	CYCGRG	1 cut(s)	1010
BsiWI	CGTACG	1 cut(s)	461
BslFI	GGGAC	2 cut(s)	593, 722
BslI	CCNNNNNNNGG	2 cut(s)	387, 527
BsmAI	GTCTC	3 cut(s)	904, 1033, 1170
BsmFI	GGGAC	2 cut(s)	593, 722
BsmI	GAATGC	2 cut(s)	39, 792
BsnI	GGCC	2 cut(s)	1061, 1148
BsoBI	CYCGRG	1 cut(s)	1010
Bsp143I	GATC	2 cut(s)	955, 1244
BspACI	CCGC	4 cut(s)	209, 521, 963, 1277
BspANI	GGCC	2 cut(s)	1061, 1148
BspCNI	CTCAG	5 cut(s)	292, 412, 592, 828, 943
BspFNI	CGCG	1 cut(s)	1277
BspMAI	CTGCAG	1 cut(s)	1306
BspMI	ACCTGC	1 cut(s)	187
BspPI	GGATC	2 cut(s)	950, 1252
BspQI	GCTCTTC	1 cut(s)	301
BspTI	CTTAAG	1 cut(s)	1331
BsrI	ACTGG	3 cut(s)	123, 605, 908
BssECI	CCNNGG	4 cut(s)	44, 383, 655, 1062
BssMI	GATC	2 cut(s)	955, 1244
Bst2UI	CCWGG	2 cut(s)	45, 657
Bst4CI	ACNGT	6 cut(s)	157, 240, 466, 782, 1119, 1130
Bst6I	CTCTTC	5 cut(s)	301, 336, 854, 1208, 1217
BstAFI	CTTAAG	1 cut(s)	1331
BstBAI	YACGTR	1 cut(s)	269
BstC8I	GCNNGC	1 cut(s)	670
BstDEI	CTNAG	6 cut(s)	300, 420, 600, 836, 930, 1098
BstF5I	GGATG	2 cut(s)	769, 1342
BstFNI	CGCG	1 cut(s)	1277
BstHHI	GCGC	1 cut(s)	1277
BstKTI	GATC	2 cut(s)	958, 1247
BstMAI	GTCTC	3 cut(s)	904, 1033, 1170
BstMBI	GATC	2 cut(s)	955, 1244
BstMWI	GCNNNNNNNGC	2 cut(s)	188, 1283
BstNI	CCWGG	2 cut(s)	45, 657
BstSCI	CCNGG	2 cut(s)	43, 655
BstSFI	CTRYAG	1 cut(s)	1302
BstUI	CGCG	1 cut(s)	1277
BstV1I	GCAGC	3 cut(s)	553, 1265, 1316
BstV2I	GAAGAC	3 cut(s)	275, 309, 338
BstXI	CCANNNNNNTGG	2 cut(s)	739, 1192
BsuRI	GGCC	2 cut(s)	1061, 1148
BtrI	CACGTC	2 cut(s)	57, 281
BtsCI	GGATG	2 cut(s)	769, 1342
BtsIMutI	CAGTG	3 cut(s)	417, 787, 901
BveI	ACCTGC	1 cut(s)	187
Cac8I	GCNNGC	1 cut(s)	670
CfoI	GCGC	1 cut(s)	1277
Cfr13I	GGNCC	3 cut(s)	272, 393, 500
CseI	GACGC	1 cut(s)	343
Csp6I	GTAC	1 cut(s)	462
CspCI	CAANNNNNGTGG	2 cut(s)	250, 285
CviAII	CATG	3 cut(s)	455, 979, 1287
CviQI	GTAC	1 cut(s)	462
DdeI	CTNAG	6 cut(s)	300, 420, 600, 836, 930, 1098
DpnI	GATC	2 cut(s)	957, 1246
DpnII	GATC	2 cut(s)	955, 1244
DrdI	GACNNNNNNGTC	1 cut(s)	279
DseDI	GACNNNNNNGTC	1 cut(s)	279
Eam1104I	CTCTTC	5 cut(s)	301, 336, 854, 1208, 1217
EarI	CTCTTC	5 cut(s)	301, 336, 854, 1208, 1217
Eco32I	GATATC	1 cut(s)	111
Eco47I	GGWCC	3 cut(s)	272, 393, 500
Eco57I	CTGAAG	2 cut(s)	450, 1341
Eco72I	CACGTG	1 cut(s)	269
Eco88I	CYCGRG	1 cut(s)	1010
EcoRII	CCWGG	2 cut(s)	43, 655
EcoRV	GATATC	1 cut(s)	111
FaeI	CATG	3 cut(s)	458, 982, 1290
FalI	AAGNNNNNCTT	1 cut(s)	1314
FaqI	GGGAC	2 cut(s)	593, 722
FatI	CATG	3 cut(s)	454, 978, 1286
FblI	GTMKAC	1 cut(s)	1132
Fnu4HI	GCNGC	4 cut(s)	567, 1254, 1278, 1305
FokI	GGATG	1 cut(s)	776
Fsp4HI	GCNGC	4 cut(s)	567, 1254, 1278, 1305
FspBI	CTAG	2 cut(s)	38, 1268
GlaI	GCGC	1 cut(s)	1276
GluI	GCNGC	4 cut(s)	567, 1254, 1278, 1305
GsaI	CCCAGC	1 cut(s)	708
GsuI	CTGGAG	1 cut(s)	140
HaeIII	GGCC	2 cut(s)	1061, 1148
HgaI	GACGC	1 cut(s)	343
HhaI	GCGC	1 cut(s)	1277
Hin1II	CATG	3 cut(s)	458, 982, 1290
Hin6I	GCGC	1 cut(s)	1275
HinP1I	GCGC	1 cut(s)	1275
HincII	GTYRAC	1 cut(s)	1007
HindII	GTYRAC	1 cut(s)	1007
HindIII	AAGCTT	1 cut(s)	670
HinfI	GANTC	9 cut(s)	205, 517, 635, 662, 812, 912, 982, 1034, 1082
HphI	GGTGA	3 cut(s)	168, 671, 710
Hpy166II	GTNNAC	7 cut(s)	272, 396, 719, 842, 1007, 1133, 1153
Hpy188III	TCNNGA	3 cut(s)	64, 856, 1012
Hpy8I	GTNNAC	7 cut(s)	272, 396, 719, 842, 1007, 1133, 1153
Hpy99I	CGWCG	2 cut(s)	244, 1203
HpyAV	CCTTC	1 cut(s)	412
HpyCH4III	ACNGT	6 cut(s)	157, 240, 466, 782, 1119, 1130
HpyCH4IV	ACGT	4 cut(s)	56, 268, 280, 690
HpyCH4V	TGCA	4 cut(s)	790, 895, 1253, 1304
HpyF10VI	GCNNNNNNNGC	2 cut(s)	188, 1283
HpyF3I	CTNAG	6 cut(s)	300, 420, 600, 836, 930, 1098
HpySE526I	ACGT	4 cut(s)	56, 268, 280, 690
Hsp92II	CATG	3 cut(s)	458, 982, 1290
HspAI	GCGC	1 cut(s)	1275
Kzo9I	GATC	2 cut(s)	955, 1244
LguI	GCTCTTC	1 cut(s)	301
LmnI	GCTCC	1 cut(s)	886
Lsp1109I	GCAGC	3 cut(s)	553, 1265, 1316
LweI	GCATC	4 cut(s)	190, 691, 745, 882
MaeI	CTAG	2 cut(s)	38, 1268
MaeII	ACGT	4 cut(s)	56, 268, 280, 690
MaeIII	GTNAC	4 cut(s)	157, 174, 424, 680
MalI	GATC	2 cut(s)	957, 1246
MboI	GATC	2 cut(s)	955, 1244
MfeI	CAATTG	1 cut(s)	1248
MluCI	AATT	8 cut(s)	85, 137, 217, 478, 511, 818, 897, 1248
MlyI	GAGTC	4 cut(s)	526, 644, 906, 1028
MmeI	TCCRAC	3 cut(s)	448, 487, 537
MseI	TTAA	5 cut(s)	288, 615, 801, 821, 1332
MslI	CAYNNNNRTG	3 cut(s)	737, 1190, 1285
MspCI	CTTAAG	1 cut(s)	1331
MspR9I	CCNGG	2 cut(s)	45, 657
MunI	CAATTG	1 cut(s)	1248
Mva1269I	GAATGC	2 cut(s)	39, 792
MvaI	CCWGG	2 cut(s)	45, 657
MvnI	CGCG	1 cut(s)	1277
MwoI	GCNNNNNNNGC	2 cut(s)	188, 1283
NdeII	GATC	2 cut(s)	955, 1244
NlaIII	CATG	3 cut(s)	458, 982, 1290
NmeAIII	GCCGAG	1 cut(s)	1087
NmuCI	GTSAC	1 cut(s)	174
OliI	CACNNNNGTG	1 cut(s)	737
PaeR7I	CTCGAG	1 cut(s)	1010
PaqCI	CACCTGC	1 cut(s)	187
PciSI	GCTCTTC	1 cut(s)	301
PctI	GAATGC	2 cut(s)	39, 792
PfeI	GAWTC	5 cut(s)	205, 662, 812, 982, 1082
Pfl23II	CGTACG	1 cut(s)	461
PkrI	GCNGC	4 cut(s)	568, 1255, 1279, 1306
PleI	GAGTC	4 cut(s)	525, 643, 906, 1028
PmaCI	CACGTG	1 cut(s)	269
PmlI	CACGTG	1 cut(s)	269
PpsI	GAGTC	4 cut(s)	525, 643, 906, 1028
Ppu21I	YACGTR	1 cut(s)	269
Psp6I	CCWGG	2 cut(s)	43, 655
PspCI	CACGTG	1 cut(s)	269
PspFI	CCCAGC	1 cut(s)	704
PspGI	CCWGG	2 cut(s)	43, 655
PspLI	CGTACG	1 cut(s)	461
PspPI	GGNCC	3 cut(s)	272, 393, 500
PstI	CTGCAG	1 cut(s)	1306
RsaI	GTAC	1 cut(s)	463
RsaNI	GTAC	1 cut(s)	462
RseI	CAYNNNNRTG	3 cut(s)	737, 1190, 1285
SapI	GCTCTTC	1 cut(s)	301
SaqAI	TTAA	5 cut(s)	288, 615, 801, 821, 1332
SatI	GCNGC	4 cut(s)	567, 1254, 1278, 1305
Sau3AI	GATC	2 cut(s)	955, 1244
Sau96I	GGNCC	3 cut(s)	272, 393, 500
SchI	GAGTC	4 cut(s)	526, 644, 906, 1028
ScrFI	CCNGG	2 cut(s)	45, 657
SfaNI	GCATC	4 cut(s)	190, 691, 745, 882
SfcI	CTRYAG	1 cut(s)	1302
Sfr274I	CTCGAG	1 cut(s)	1010
SinI	GGWCC	3 cut(s)	272, 393, 500
SlaI	CTCGAG	1 cut(s)	1010
SmiMI	CAYNNNNRTG	3 cut(s)	737, 1190, 1285
SmlI	CTYRAG	2 cut(s)	1010, 1331
SmoI	CTYRAG	2 cut(s)	1010, 1331
Sse9I	AATT	8 cut(s)	85, 137, 217, 478, 511, 818, 897, 1248
SsiI	CCGC	4 cut(s)	209, 521, 963, 1277
SspMI	CTAG	2 cut(s)	38, 1268
StyD4I	CCNGG	2 cut(s)	43, 655
TaaI	ACNGT	6 cut(s)	157, 240, 466, 782, 1119, 1130
TaiI	ACGT	4 cut(s)	59, 271, 283, 693
TaqI	TCGA	5 cut(s)	63, 810, 855, 1011, 1092
TasI	AATT	8 cut(s)	85, 137, 217, 478, 511, 818, 897, 1248
TauI	GCSGC	1 cut(s)	1280
TfiI	GAWTC	5 cut(s)	205, 662, 812, 982, 1082
Tru1I	TTAA	5 cut(s)	288, 615, 801, 821, 1332
Tru9I	TTAA	5 cut(s)	288, 615, 801, 821, 1332
TscAI	CASTG	3 cut(s)	424, 787, 908
TseFI	GTSAC	1 cut(s)	174
TseI	GCWGC	3 cut(s)	566, 1253, 1304
Tsp45I	GTSAC	1 cut(s)	174
TspDTI	ATGAA	3 cut(s)	443, 780, 995
TspGWI	ACGGA	1 cut(s)	905
TspRI	CASTG	3 cut(s)	424, 787, 908
Vha464I	CTTAAG	1 cut(s)	1331
VpaK11BI	GGWCC	3 cut(s)	272, 393, 500
XapI	RAATTY	1 cut(s)	897
XcmI	CCANNNNNNNNNTGG	1 cut(s)	266
XhoI	CTCGAG	1 cut(s)	1010
XmiI	GTMKAC	1 cut(s)	1132
XspI	CTAG	2 cut(s)	38, 1268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.