FvH4_1g12900

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Reverse (-)
7123548 .. 7127869
4322 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g12900.t2

Sequence Viewer

Length: 1467 bp
ATGCCGACTTTCTCTGTCATAGCTTTAGATAGGTTATTAGAAGCTGGAGCTTCTTCCAAATCTGCCGACATGTCTGTTCCTAATTCTGGTGCTTCTTCCAAATCTGCCGATGTGTCTGTTCCTATTCCCAAGCCTGTTTCACATTCGATGCCTGTTCCTGAGGGACCCATGAAGCTGGAGAGGAGGAATAGTACCTCGGTTATGGAGGGGAGGAAGAGCACCTCGGTTATGGAGAGGAAGCCTCGTCGACCTCCAATAAGGCCAGCACTATATGCCACTCCTGAGACAACTCCACTACCGGATTCACCCACTTCTTTCCCTCCCTCATCACCTTACATTGTCAACCACAAGCGCCGTGGCCCACGCCTTCTCAAGAGTTACTCGGAGCAGGATGTTTCGTTACACCAGAAATCTGGAGATGAAGGGAAACTGAATGGTTCCTTGCACCAGAAATCTGGAGACAAAGAGAAACTGAATGGCACCACCGACATTGAGGCCAAGGCGGAAACTTCTCCAGTGGATGATTCACTTACTTTTACCGTACCCAAGCCAAGTCAAGTACAACATTCAAATGGTGTCCATCCTATTGGTAGCAGCAATGGGAACCTTGAGACCAGTAATGGGGTACCTAGGAGCAGTGATGTTGAATTGGGTACTAGTAGTATGACTAATGGTTCAGCCAGGGAAGATGATTTGTTCCAGCAAGGTGCCATGGCTTCCGAAAGTGATCGTGATGATTTCTTTGATCCAAAAGATAACATGAGTGTCACAAGTAACACAGATGGAGAGGGAAATGCTGGGGCAGAGCGTTCTGTGCCTATTGGTATACCTGCTGGGGAGTTTTATGATGCCTGGGAAGAACTTTCATCTGAGGGTGGTCATAGCCAACAGCTTTCGGGTTGTGATCTTGAAACTGAGCTACGTGAGATGAGATTGAGTCTTGTGATGGAGATAGAAAAGCGGAAGCAAGCTGAGGAATCCTTGAATAACTTGCGGAACCAGTGGCAGAGGATCAGGGAACAGTTATCTCTTGTAGGATTGACTCTTCCTGCAGATCCCACTGTTACAACAGACCATGAGCAGCTAGGTTCTGATCCTGTGGGAGAGTTGGGGCAACAGCTTTATCTTGCTAGGTTTGTATCAAATTCTATCGGGAGGGCCATAGCAAGGGCAGAGATGGAGGCAGAGTTGGAAGATCAGATTGAGGCGAAGAACTTTGAGATTGCTAGGTTGTGCGACAAGCTTCATAATTATGAAGCTATGAATCAGGAAATGGTCCAGAGGAATCAGGATGTCATCGAGCTGGCGCGGCGTGACAGGGAGAAGAAGGCAAAACGACAAAGGTGGGTCTGGGGCTCGATTGCTACTGCCCTCACACTTGGTACAGCAGCCTTGGCATACTCCTATTATCCATCTGGAAGAGGATCTCCGACCTACCATTCTGAGGCTTCCGGGAGTGATAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

489

Amino Acids

53.4

Weight (kDa)

5.3

Isoelectric Point (pI)

49.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 838
Acc65I GGTACC 1 cut(s) 625
AccB1I GGYRCC 3 cut(s) 479, 625, 707
AccI GTMKAC 2 cut(s) 247, 826
AccII CGCG 1 cut(s) 1309
AciI CCGC 4 cut(s) 503, 961, 994, 1309
AclWI GGATC 5 cut(s) 740, 1019, 1049, 1088, 1432
AcsI RAATTY 1 cut(s) 1144
AfaI GTAC 6 cut(s) 193, 543, 561, 627, 655, 1384
AfiI CCNNNNNNNGG 4 cut(s) 86, 621, 1167, 1444
AflIII ACRYGT 1 cut(s) 69
AgsI TTSAA 4 cut(s) 570, 647, 911, 985
AhlI ACTAGT 1 cut(s) 656
AjnI CCWGG 2 cut(s) 680, 851
Alw21I GWGCWC 1 cut(s) 221
Alw26I GTCTC 3 cut(s) 278, 453, 605
AlwI GGATC 5 cut(s) 740, 1019, 1049, 1088, 1432
AoxI GGCC 4 cut(s) 260, 358, 495, 1158
ApeKI GCWGC 3 cut(s) 594, 1081, 1388
ApoI RAATTY 1 cut(s) 1144
Asp718I GGTACC 1 cut(s) 625
AspA2I CCTAGG 1 cut(s) 629
AspLEI GCGC 2 cut(s) 354, 1309
AspS9I GGNCC 4 cut(s) 164, 359, 1158, 1276
AsuC2I CCSGG 1 cut(s) 1453
AsuHPI GGTGA 2 cut(s) 297, 321
AvaII GGWCC 2 cut(s) 164, 1276
AvrII CCTAGG 1 cut(s) 629
AxyI CCTNAGG 1 cut(s) 159
BanI GGYRCC 3 cut(s) 479, 625, 707
BanII GRGCYC 1 cut(s) 1358
Bbv12I GWGCWC 1 cut(s) 221
BbvCI CCTCAGC 1 cut(s) 972
BbvI GCAGC 3 cut(s) 606, 1093, 1400
BccI CCATC 5 cut(s) 588, 776, 940, 1171, 1420
BceAI ACGGC 1 cut(s) 339
BciT130I CCWGG 2 cut(s) 682, 853
BcnI CCSGG 1 cut(s) 1453
BcoDI GTCTC 3 cut(s) 278, 453, 605
BcuI ACTAGT 1 cut(s) 656
BfaI CTAG 5 cut(s) 630, 657, 1085, 1131, 1227
BfmI CTRYAG 1 cut(s) 1050
BfoI RGCGCY 1 cut(s) 355
BfuAI ACCTGC 1 cut(s) 838
BisI GCNGC 4 cut(s) 595, 1082, 1310, 1389
BlnI CCTAGG 1 cut(s) 629
BlsI GCNGC 4 cut(s) 596, 1083, 1311, 1390
Bme1390I CCNGG 3 cut(s) 682, 853, 1453
Bme18I GGWCC 2 cut(s) 164, 1276
BmgT120I GGNCC 4 cut(s) 164, 359, 1158, 1276
BmiI GGNNCC 8 cut(s) 165, 166, 439, 481, 605, 627, 709, 998
BmrFI CCNGG 3 cut(s) 682, 853, 1453
BmsI GCATC 2 cut(s) 138, 838
BplI GAGNNNNNCTC 2 cut(s) 226, 258
BpmI CTGGAG 5 cut(s) 66, 197, 435, 477, 498
Bpu10I CCTNAGC 1 cut(s) 972
BpuEI CTTGAG 2 cut(s) 356, 629
BpuMI CCSGG 1 cut(s) 1453
BsaAI YACGTR 1 cut(s) 923
BsaI GGTCTC 1 cut(s) 605
BsaJI CCNNGG 9 cut(s) 195, 222, 355, 498, 629, 681, 711, 852, 1392
BsaWI WCCGGW 1 cut(s) 298
BsaXI ACNNNNNCTCC 4 cut(s) 175, 205, 1172, 1202
Bsc4I CCNNNNNNNGG 4 cut(s) 86, 621, 1167, 1444
Bse1I ACTGG 3 cut(s) 515, 615, 1000
Bse21I CCTNAGG 1 cut(s) 159
Bse3DI GCAATG 1 cut(s) 604
BseBI CCWGG 2 cut(s) 682, 853
BseDI CCNNGG 9 cut(s) 195, 222, 355, 498, 629, 681, 711, 852, 1392
BseGI GGATG 4 cut(s) 397, 526, 580, 1297
BseLI CCNNNNNNNGG 4 cut(s) 86, 621, 1167, 1444
BseMI GCAATG 1 cut(s) 604
BseMII CTCAG 6 cut(s) 150, 273, 861, 906, 963, 1434
BseNI ACTGG 3 cut(s) 515, 615, 1000
BseRI GAGGAG 1 cut(s) 196
BseXI GCAGC 3 cut(s) 606, 1093, 1400
BseYI CCCAGC 2 cut(s) 797, 833
Bsh1236I CGCG 1 cut(s) 1309
BshFI GGCC 4 cut(s) 262, 360, 497, 1160
BshNI GGYRCC 3 cut(s) 479, 625, 707
BsiHKAI GWGCWC 1 cut(s) 221
BsiSI CCGG 2 cut(s) 299, 1452
BslFI GGGAC 1 cut(s) 177
BslI CCNNNNNNNGG 4 cut(s) 86, 621, 1167, 1444
BsmAI GTCTC 3 cut(s) 278, 453, 605
BsmFI GGGAC 1 cut(s) 177
BsnI GGCC 4 cut(s) 262, 360, 497, 1160
Bso31I GGTCTC 1 cut(s) 605
Bsp1286I GDGCHC 2 cut(s) 221, 1358
Bsp143I GATC 8 cut(s) 727, 745, 904, 1011, 1054, 1093, 1195, 1424
Bsp19I CCATGG 1 cut(s) 711
BspACI CCGC 4 cut(s) 503, 961, 994, 1309
BspANI GGCC 4 cut(s) 262, 360, 497, 1160
BspCNI CTCAG 6 cut(s) 151, 274, 862, 907, 964, 1435
BspFNI CGCG 1 cut(s) 1309
BspLI GGNNCC 8 cut(s) 165, 166, 439, 481, 605, 627, 709, 998
BspMAI CTGCAG 1 cut(s) 1054
BspMI ACCTGC 1 cut(s) 838
BspPI GGATC 5 cut(s) 740, 1019, 1049, 1088, 1432
BspQI GCTCTTC 1 cut(s) 209
BspT107I GGYRCC 3 cut(s) 479, 625, 707
BspTNI GGTCTC 1 cut(s) 605
BsrDI GCAATG 1 cut(s) 604
BsrI ACTGG 3 cut(s) 515, 615, 1000
BssECI CCNNGG 9 cut(s) 195, 222, 355, 498, 629, 681, 711, 852, 1392
BssMI GATC 8 cut(s) 727, 745, 904, 1011, 1054, 1093, 1195, 1424
BssNAI GTATAC 1 cut(s) 827
BssT1I CCWWGG 4 cut(s) 498, 629, 711, 1392
Bst1107I GTATAC 1 cut(s) 827
Bst2UI CCWGG 2 cut(s) 682, 853
Bst4CI ACNGT 3 cut(s) 541, 1023, 1063
Bst6I CTCTTC 3 cut(s) 209, 1050, 1414
BstAPI GCANNNNNTGC 1 cut(s) 272
BstBAI YACGTR 1 cut(s) 923
BstC8I GCNNGC 3 cut(s) 264, 969, 1305
BstDEI CTNAG 6 cut(s) 159, 282, 870, 915, 972, 1443
BstDSI CCRYGG 2 cut(s) 355, 711
BstF5I GGATG 4 cut(s) 397, 526, 580, 1297
BstFNI CGCG 1 cut(s) 1309
BstH2I RGCGCY 1 cut(s) 355
BstHHI GCGC 2 cut(s) 354, 1309
BstKTI GATC 8 cut(s) 730, 748, 907, 1014, 1057, 1096, 1198, 1427
BstMAI GTCTC 3 cut(s) 278, 453, 605
BstMBI GATC 8 cut(s) 727, 745, 904, 1011, 1054, 1093, 1195, 1424
BstMWI GCNNNNNNNGC 4 cut(s) 272, 814, 1309, 1394
BstNI CCWGG 2 cut(s) 682, 853
BstNSI RCATGY 1 cut(s) 73
BstSCI CCNGG 3 cut(s) 680, 851, 1451
BstSFI CTRYAG 1 cut(s) 1050
BstUI CGCG 1 cut(s) 1309
BstV1I GCAGC 3 cut(s) 606, 1093, 1400
BstX2I RGATCY 2 cut(s) 1054, 1424
BstXI CCANNNNNNTGG 4 cut(s) 175, 413, 455, 587
BstYI RGATCY 2 cut(s) 1054, 1424
BstZ17I GTATAC 1 cut(s) 827
Bsu36I CCTNAGG 1 cut(s) 159
BsuRI GGCC 4 cut(s) 262, 360, 497, 1160
BtgI CCRYGG 2 cut(s) 355, 711
BtsCI GGATG 4 cut(s) 397, 526, 580, 1297
BtsI GCAGTG 1 cut(s) 643
BtsIMutI CAGTG 4 cut(s) 522, 643, 1007, 1059
BveI ACCTGC 1 cut(s) 838
Cac8I GCNNGC 3 cut(s) 264, 969, 1305
CfoI GCGC 2 cut(s) 354, 1309
Cfr13I GGNCC 4 cut(s) 164, 359, 1158, 1276
Csp6I GTAC 6 cut(s) 192, 542, 560, 626, 654, 1383
CspCI CAANNNNNGTGG 4 cut(s) 337, 372, 472, 507
CviAII CATG 5 cut(s) 70, 169, 712, 760, 1076
CviQI GTAC 6 cut(s) 192, 542, 560, 626, 654, 1383
DdeI CTNAG 6 cut(s) 159, 282, 870, 915, 972, 1443
DpnI GATC 8 cut(s) 729, 747, 906, 1013, 1056, 1095, 1197, 1426
DpnII GATC 8 cut(s) 727, 745, 904, 1011, 1054, 1093, 1195, 1424
Eam1104I CTCTTC 3 cut(s) 209, 1050, 1414
EarI CTCTTC 3 cut(s) 209, 1050, 1414
EciI GGCGGA 1 cut(s) 518
Eco130I CCWWGG 4 cut(s) 498, 629, 711, 1392
Eco24I GRGCYC 1 cut(s) 1358
Eco31I GGTCTC 1 cut(s) 605
Eco47I GGWCC 2 cut(s) 164, 1276
Eco81I CCTNAGG 1 cut(s) 159
EcoO109I RGGNCCY 1 cut(s) 164
EcoRII CCWGG 2 cut(s) 680, 851
EcoT14I CCWWGG 4 cut(s) 498, 629, 711, 1392
EcoT38I GRGCYC 1 cut(s) 1358
ErhI CCWWGG 4 cut(s) 498, 629, 711, 1392
FaeI CATG 5 cut(s) 73, 172, 715, 763, 1079
FaqI GGGAC 1 cut(s) 177
FatI CATG 5 cut(s) 69, 168, 711, 759, 1075
FblI GTMKAC 2 cut(s) 247, 826
Fnu4HI GCNGC 4 cut(s) 595, 1082, 1310, 1389
FokI GGATG 4 cut(s) 404, 533, 567, 1304
FriOI GRGCYC 1 cut(s) 1358
Fsp4HI GCNGC 4 cut(s) 595, 1082, 1310, 1389
FspBI CTAG 5 cut(s) 630, 657, 1085, 1131, 1227
GlaI GCGC 2 cut(s) 353, 1308
GluI GCNGC 4 cut(s) 595, 1082, 1310, 1389
GsaI CCCAGC 2 cut(s) 801, 837
GsuI CTGGAG 5 cut(s) 66, 197, 435, 477, 498
HaeII RGCGCY 1 cut(s) 355
HaeIII GGCC 4 cut(s) 262, 360, 497, 1160
HapII CCGG 2 cut(s) 299, 1452
HhaI GCGC 2 cut(s) 354, 1309
Hin1II CATG 5 cut(s) 73, 172, 715, 763, 1079
Hin6I GCGC 2 cut(s) 352, 1307
HinP1I GCGC 2 cut(s) 352, 1307
HincII GTYRAC 2 cut(s) 248, 343
HindII GTYRAC 2 cut(s) 248, 343
HindIII AAGCTT 1 cut(s) 1241
HinfI GANTC 7 cut(s) 302, 524, 937, 977, 1042, 1264, 1285
HpaII CCGG 2 cut(s) 299, 1452
HphI GGTGA 2 cut(s) 297, 321
Hpy166II GTNNAC 3 cut(s) 248, 343, 827
Hpy188I TCNGA 7 cut(s) 385, 721, 871, 1093, 1200, 1431, 1444
Hpy8I GTNNAC 3 cut(s) 248, 343, 827
Hpy99I CGWCG 1 cut(s) 249
HpyAV CCTTC 3 cut(s) 377, 416, 1321
HpyCH4III ACNGT 3 cut(s) 541, 1023, 1063
HpyCH4IV ACGT 1 cut(s) 922
HpyCH4V TGCA 2 cut(s) 445, 1052
HpyF10VI GCNNNNNNNGC 4 cut(s) 272, 814, 1309, 1394
HpyF3I CTNAG 6 cut(s) 159, 282, 870, 915, 972, 1443
HpySE526I ACGT 1 cut(s) 922
Hsp92II CATG 5 cut(s) 73, 172, 715, 763, 1079
HspAI GCGC 2 cut(s) 352, 1307
KflI GGGWCCC 1 cut(s) 164
KpnI GGTACC 1 cut(s) 629
Kzo9I GATC 8 cut(s) 727, 745, 904, 1011, 1054, 1093, 1195, 1424
LguI GCTCTTC 1 cut(s) 209
LmnI GCTCC 3 cut(s) 47, 385, 633
Lsp1109I GCAGC 3 cut(s) 606, 1093, 1400
LweI GCATC 2 cut(s) 138, 838
MaeI CTAG 5 cut(s) 630, 657, 1085, 1131, 1227
MaeII ACGT 1 cut(s) 922
MaeIII GTNAC 6 cut(s) 377, 399, 766, 773, 1063, 1313
MalI GATC 8 cut(s) 729, 747, 906, 1013, 1056, 1095, 1197, 1426
MboI GATC 8 cut(s) 727, 745, 904, 1011, 1054, 1093, 1195, 1424
MflI RGATCY 2 cut(s) 1054, 1424
MhlI GDGCHC 2 cut(s) 221, 1358
MluCI AATT 4 cut(s) 82, 647, 1144, 1249
MlyI GAGTC 2 cut(s) 946, 1036
MmeI TCCRAC 2 cut(s) 1170, 1454
MslI CAYNNNNRTG 2 cut(s) 570, 1251
MspI CCGG 2 cut(s) 299, 1452
MspR9I CCNGG 3 cut(s) 682, 853, 1453
MvaI CCWGG 2 cut(s) 682, 853
MvnI CGCG 1 cut(s) 1309
MwoI GCNNNNNNNGC 4 cut(s) 272, 814, 1309, 1394
NciI CCSGG 1 cut(s) 1453
NcoI CCATGG 1 cut(s) 711
NdeII GATC 8 cut(s) 727, 745, 904, 1011, 1054, 1093, 1195, 1424
NlaIII CATG 5 cut(s) 73, 172, 715, 763, 1079
NlaIV GGNNCC 8 cut(s) 165, 166, 439, 481, 605, 627, 709, 998
NmuCI GTSAC 2 cut(s) 766, 1313
NspI RCATGY 1 cut(s) 73
PciI ACATGT 1 cut(s) 69
PciSI GCTCTTC 1 cut(s) 209
PfeI GAWTC 5 cut(s) 302, 524, 977, 1264, 1285
PfoI TCCNGGA 1 cut(s) 1451
PkrI GCNGC 4 cut(s) 596, 1083, 1311, 1390
PleI GAGTC 2 cut(s) 945, 1036
PpsI GAGTC 2 cut(s) 945, 1036
Ppu21I YACGTR 1 cut(s) 923
PpuMI RGGWCCY 1 cut(s) 164
PscI ACATGT 1 cut(s) 69
Psp5II RGGWCCY 1 cut(s) 164
Psp6I CCWGG 2 cut(s) 680, 851
PspFI CCCAGC 2 cut(s) 797, 833
PspGI CCWGG 2 cut(s) 680, 851
PspN4I GGNNCC 8 cut(s) 165, 166, 439, 481, 605, 627, 709, 998
PspPI GGNCC 4 cut(s) 164, 359, 1158, 1276
PspPPI RGGWCCY 1 cut(s) 164
PstI CTGCAG 1 cut(s) 1054
PsuI RGATCY 2 cut(s) 1054, 1424
RsaI GTAC 6 cut(s) 193, 543, 561, 627, 655, 1384
RsaNI GTAC 6 cut(s) 192, 542, 560, 626, 654, 1383
RseI CAYNNNNRTG 2 cut(s) 570, 1251
SalI GTCGAC 1 cut(s) 246
SapI GCTCTTC 1 cut(s) 209
SatI GCNGC 4 cut(s) 595, 1082, 1310, 1389
Sau3AI GATC 8 cut(s) 727, 745, 904, 1011, 1054, 1093, 1195, 1424
Sau96I GGNCC 4 cut(s) 164, 359, 1158, 1276
SchI GAGTC 2 cut(s) 946, 1036
ScrFI CCNGG 3 cut(s) 682, 853, 1453
SduI GDGCHC 2 cut(s) 221, 1358
SfaNI GCATC 2 cut(s) 138, 838
SfcI CTRYAG 1 cut(s) 1050
SinI GGWCC 2 cut(s) 164, 1276
SmiMI CAYNNNNRTG 2 cut(s) 570, 1251
SmlI CTYRAG 2 cut(s) 371, 608
SmoI CTYRAG 2 cut(s) 371, 608
SpeI ACTAGT 1 cut(s) 656
Sse9I AATT 4 cut(s) 82, 647, 1144, 1249
SsiI CCGC 4 cut(s) 503, 961, 994, 1309
SspMI CTAG 5 cut(s) 630, 657, 1085, 1131, 1227
StyD4I CCNGG 3 cut(s) 680, 851, 1451
StyI CCWWGG 4 cut(s) 498, 629, 711, 1392
TaaI ACNGT 3 cut(s) 541, 1023, 1063
TaiI ACGT 1 cut(s) 925
TaqI TCGA 4 cut(s) 146, 247, 1299, 1358
TasI AATT 4 cut(s) 82, 647, 1144, 1249
TatI WGTACW 1 cut(s) 559
TauI GCSGC 1 cut(s) 1312
TfiI GAWTC 5 cut(s) 302, 524, 977, 1264, 1285
TscAI CASTG 4 cut(s) 522, 643, 1007, 1066
TseFI GTSAC 2 cut(s) 766, 1313
TseI GCWGC 3 cut(s) 594, 1081, 1388
Tsp45I GTSAC 2 cut(s) 766, 1313
TspDTI ATGAA 6 cut(s) 185, 435, 855, 1235, 1269, 1277
TspRI CASTG 4 cut(s) 522, 643, 1007, 1066
VpaK11BI GGWCC 2 cut(s) 164, 1276
XapI RAATTY 1 cut(s) 1144
XceI RCATGY 1 cut(s) 73
XcmI CCANNNNNNNNNTGG 1 cut(s) 353
XmaJI CCTAGG 1 cut(s) 629
XmiI GTMKAC 2 cut(s) 247, 826
XspI CTAG 5 cut(s) 630, 657, 1085, 1131, 1227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.