RLG00000017033

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
12286640 .. 12289257
2618 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017033

Sequence Viewer

Length: 1344 bp
ATGTCTGTTCCTAATTCCAAGCCTGTTTCGCATTCGATGCCTGTTCCTGAGGGCCCCTCAAAGCTGGAGAGGAGGAATAGTACCTCGGTCATGGAGAGGAAGCCTCATCGACCTCCAATAAGGCCAGCGCTCTACGCCACTCCCGAGACAACTCCACTACCTGATTCACCCACTTCTTTCCCTCCCTCACCTTACATCGTCAACCACAAGCGCCGTGGCCCGCGCCTTCTCAAGAGTTACTCGGAGCAGGATGTATCCTTACACCAGAAATCTGGAGATGAAGAGAAACTGAATGGTTCCTTACACCAGAAATGTGGAGATGAAGAGAAACTGAATGGCATTGCCAACAATGCAGAGGCCAAGGTGGAAACTTCTCCAGTGGATGATTCACTTACTTTCACTGTACCCAAGCCAAGTCAAGTACAACATTCAAATGGTATCCATCCTAGTGGTAGTAGCAATGGCAACGTGGACACCAGTAATGGGGTTCTTAGGAGCAGTAGTGTCGAACTGGGTGCTGTTAGTATGACTAATGATTCAGCCAGGGAAGATGATTTGTTCCAGCAAGCTGCCATGGCTTCCGAAAGAGATAGTGATCGTGATGATTTCTTTGATCCAAAAGACAGCATGAGTGTCACAAGTAACACAGACGGAGAGGGAAATGCTGGGACAGAGCGTTCTGCGCCTATGAGTATACCTGCTGGGGAGTTTTACGATGCCTGGGAAGAACTTTCATCTGAGGGTGGTCATGGGAAACAGCTTTCTGCTTGTGATCTTGAAACTGAGCTGCGTGAGATGAGATTGAGTCTTGTGATGGAGATAGAAAAGCGGAAGCAAGCTGAAGAATCCTTGGATAACTTGCGAGACCAGTGGCAGAGGATTAGGCAACAGTTATCTCTTGTAGGATTGACTCTTCCTGCAGATCCCACTGTTACAACAGAGCATGAGCATCTAGGTTGTGATCCTGCAGAAGAGCTGGGGCAACAGCTTTATCTTGCCAGGTTTGTATCAAATTCTATTGGGAGGGCCATAGCAAGGGCTGAGATGGAGGCAGAGTTGGAAGATCAGATCGAGTCGAAGAACTTTGAGATTGCTAGGTTGTGTGACAAGCTTCATAATTATGAGGCTATGAATCAGGAAATGGTTCAGAGGAACCAGGACGTCATTGAGCTGGCACGGCGTGAAAGGGAGAAGAAGGCAAAACGACAAAGGTGGGTCTGGGGCTCAATTGCTACTGCCCTCGCACTTGGTACAGCAGCCTTGGCATACTCTTATTATCCATCTGGAAGAGGATCTCCAACCTACCATTCTGAGTCGTCCGAGAGTGATAATGCAGGCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

448

Amino Acids

49.48

Weight (kDa)

5.14

Isoelectric Point (pI)

58.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1164
Acc36I ACCTGC 1 cut(s) 706
AccI GTMKAC 1 cut(s) 694
AccII CGCG 1 cut(s) 223
AciI CCGC 2 cut(s) 221, 829
AclWI GGATC 4 cut(s) 608, 917, 956, 1300
AcsI RAATTY 1 cut(s) 1012
AcuI CTGAAG 1 cut(s) 861
AcyI GRCGYC 1 cut(s) 1161
AdeI CACNNNGTG 1 cut(s) 1181
AfaI GTAC 4 cut(s) 82, 405, 423, 1252
AfeI AGCGCT 1 cut(s) 129
AfiI CCNNNNNNNGG 2 cut(s) 483, 1035
AgsI TTSAA 2 cut(s) 432, 779
AjnI CCWGG 4 cut(s) 542, 719, 998, 1155
AjuI GAANNNNNNNTTGG 2 cut(s) 1291, 1323
AloI GAACNNNNNNTCC 2 cut(s) 661, 693
AluBI AGCT 9 cut(s) 64, 569, 760, 787, 839, 976, 988, 1111, 1171
AluI AGCT 9 cut(s) 64, 569, 760, 787, 839, 976, 988, 1111, 1171
Alw26I GTCTC 2 cut(s) 140, 858
AlwI GGATC 4 cut(s) 608, 917, 956, 1300
Ama87I CYCGRG 1 cut(s) 143
Aor51HI AGCGCT 1 cut(s) 129
AoxI GGCC 5 cut(s) 52, 122, 217, 357, 1026
ApaI GGGCCC 1 cut(s) 56
ApeKI GCWGC 3 cut(s) 569, 787, 1256
ApoI RAATTY 1 cut(s) 1012
Asp700I GAANNNNTTC 1 cut(s) 1143
AspLEI GCGC 4 cut(s) 130, 213, 225, 685
AspS9I GGNCC 4 cut(s) 52, 53, 218, 1026
AsuHPI GGTGA 2 cut(s) 159, 180
AvaI CYCGRG 1 cut(s) 143
AxyI CCTNAGG 1 cut(s) 48
BaeGI GKGCMC 1 cut(s) 56
BanII GRGCYC 2 cut(s) 56, 1226
BbvI GCAGC 3 cut(s) 556, 774, 1268
BccI CCATC 4 cut(s) 450, 808, 1039, 1288
BceAI ACGGC 2 cut(s) 198, 1193
BcgI CGANNNNNNTGC 4 cut(s) 487, 497, 521, 531
BciT130I CCWGG 4 cut(s) 544, 721, 1000, 1157
BciVI GTATCC 2 cut(s) 265, 449
BcoDI GTCTC 2 cut(s) 140, 858
BfaI CTAG 3 cut(s) 447, 953, 1095
BfmI CTRYAG 2 cut(s) 918, 966
BfoI RGCGCY 2 cut(s) 131, 214
BfuAI ACCTGC 1 cut(s) 706
BfuI GTATCC 2 cut(s) 265, 449
BisI GCNGC 3 cut(s) 570, 788, 1257
BlsI GCNGC 3 cut(s) 571, 789, 1258
Bme1390I CCNGG 4 cut(s) 544, 721, 1000, 1157
BmeT110I CYCGRG 1 cut(s) 143
BmgT120I GGNCC 4 cut(s) 52, 53, 218, 1026
BmiI GGNNCC 4 cut(s) 54, 55, 298, 1154
BmrFI CCNGG 4 cut(s) 544, 721, 1000, 1157
BmrI ACTGGG 1 cut(s) 521
BmsI GCATC 3 cut(s) 27, 706, 958
BmuI ACTGGG 1 cut(s) 521
BplI GAGNNNNNCTC 4 cut(s) 41, 73, 88, 120
BpmI CTGGAG 3 cut(s) 86, 294, 360
BpuEI CTTGAG 1 cut(s) 215
BsaBI GATNNNNATC 1 cut(s) 594
BsaHI GRCGYC 1 cut(s) 1161
BsaI GGTCTC 1 cut(s) 858
BsaJI CCNNGG 8 cut(s) 84, 214, 360, 543, 573, 720, 849, 1260
BsaXI ACNNNNNCTCC 6 cut(s) 64, 94, 487, 517, 1040, 1070
Bsc4I CCNNNNNNNGG 2 cut(s) 483, 1035
Bse1I ACTGG 4 cut(s) 377, 477, 516, 868
Bse21I CCTNAGG 1 cut(s) 48
Bse3DI GCAATG 2 cut(s) 339, 466
Bse8I GATNNNNATC 1 cut(s) 594
BseBI CCWGG 4 cut(s) 544, 721, 1000, 1157
BseDI CCNNGG 8 cut(s) 84, 214, 360, 543, 573, 720, 849, 1260
BseGI GGATG 3 cut(s) 256, 388, 442
BseJI GATNNNNATC 1 cut(s) 594
BseLI CCNNNNNNNGG 2 cut(s) 483, 1035
BseMI GCAATG 2 cut(s) 339, 466
BseMII CTCAG 5 cut(s) 39, 729, 774, 1032, 1302
BseNI ACTGG 4 cut(s) 377, 477, 516, 868
BseRI GAGGAG 1 cut(s) 85
BseSI GKGCMC 1 cut(s) 56
BseXI GCAGC 3 cut(s) 556, 774, 1268
BseYI CCCAGC 3 cut(s) 665, 701, 976
Bsh1236I CGCG 1 cut(s) 223
BshFI GGCC 5 cut(s) 54, 124, 219, 359, 1028
BsiHKCI CYCGRG 1 cut(s) 143
BslFI GGGAC 1 cut(s) 682
BslI CCNNNNNNNGG 2 cut(s) 483, 1035
BsmAI GTCTC 2 cut(s) 140, 858
BsmFI GGGAC 1 cut(s) 682
BsmI GAATGC 1 cut(s) 31
BsnI GGCC 5 cut(s) 54, 124, 219, 359, 1028
Bso31I GGTCTC 1 cut(s) 858
BsoBI CYCGRG 1 cut(s) 143
Bsp120I GGGCCC 1 cut(s) 52
Bsp1286I GDGCHC 2 cut(s) 56, 1226
Bsp143I GATC 8 cut(s) 595, 613, 772, 922, 961, 1063, 1068, 1292
Bsp19I CCATGG 1 cut(s) 573
BspACI CCGC 2 cut(s) 221, 829
BspANI GGCC 5 cut(s) 54, 124, 219, 359, 1028
BspCNI CTCAG 5 cut(s) 40, 730, 775, 1033, 1303
BspFNI CGCG 1 cut(s) 223
BspLI GGNNCC 4 cut(s) 54, 55, 298, 1154
BspMAI CTGCAG 2 cut(s) 922, 970
BspMI ACCTGC 1 cut(s) 706
BspPI GGATC 4 cut(s) 608, 917, 956, 1300
BspQI GCTCTTC 1 cut(s) 966
BspTNI GGTCTC 1 cut(s) 858
BsrDI GCAATG 2 cut(s) 339, 466
BsrI ACTGG 4 cut(s) 377, 477, 516, 868
BssECI CCNNGG 8 cut(s) 84, 214, 360, 543, 573, 720, 849, 1260
BssMI GATC 8 cut(s) 595, 613, 772, 922, 961, 1063, 1068, 1292
BssNAI GTATAC 1 cut(s) 695
BssNI GRCGYC 1 cut(s) 1161
BssT1I CCWWGG 4 cut(s) 360, 573, 849, 1260
Bst1107I GTATAC 1 cut(s) 695
Bst2UI CCWGG 4 cut(s) 544, 721, 1000, 1157
Bst4CI ACNGT 3 cut(s) 403, 891, 931
Bst6I CTCTTC 5 cut(s) 276, 318, 918, 966, 1282
BstACI GRCGYC 1 cut(s) 1161
BstAPI GCANNNNNTGC 1 cut(s) 37
BstC8I GCNNGC 6 cut(s) 126, 221, 567, 837, 1173, 1336
BstDEI CTNAG 6 cut(s) 48, 491, 738, 783, 1041, 1311
BstDSI CCRYGG 2 cut(s) 214, 573
BstF5I GGATG 3 cut(s) 256, 388, 442
BstFNI CGCG 1 cut(s) 223
BstH2I RGCGCY 2 cut(s) 131, 214
BstHHI GCGC 4 cut(s) 130, 213, 225, 685
BstKTI GATC 8 cut(s) 598, 616, 775, 925, 964, 1066, 1071, 1295
BstMAI GTCTC 2 cut(s) 140, 858
BstMBI GATC 8 cut(s) 595, 613, 772, 922, 961, 1063, 1068, 1292
BstMWI GCNNNNNNNGC 8 cut(s) 28, 37, 134, 350, 575, 682, 1177, 1262
BstNI CCWGG 4 cut(s) 544, 721, 1000, 1157
BstSCI CCNGG 4 cut(s) 542, 719, 998, 1155
BstSFI CTRYAG 2 cut(s) 918, 966
BstSLI GKGCMC 1 cut(s) 56
BstUI CGCG 1 cut(s) 223
BstV1I GCAGC 3 cut(s) 556, 774, 1268
BstX2I RGATCY 2 cut(s) 922, 1292
BstXI CCANNNNNNTGG 3 cut(s) 272, 314, 449
BstYI RGATCY 2 cut(s) 922, 1292
BstZ17I GTATAC 1 cut(s) 695
Bsu36I CCTNAGG 1 cut(s) 48
BsuI GTATCC 2 cut(s) 265, 449
BsuRI GGCC 5 cut(s) 54, 124, 219, 359, 1028
BtgI CCRYGG 2 cut(s) 214, 573
BtsCI GGATG 3 cut(s) 256, 388, 442
BtsIMutI CAGTG 4 cut(s) 384, 399, 875, 927
BveI ACCTGC 1 cut(s) 706
Cac8I GCNNGC 6 cut(s) 126, 221, 567, 837, 1173, 1336
CfoI GCGC 4 cut(s) 130, 213, 225, 685
Cfr13I GGNCC 4 cut(s) 52, 53, 218, 1026
Csp6I GTAC 4 cut(s) 81, 404, 422, 1251
CspCI CAANNNNNGTGG 2 cut(s) 196, 231
CviAII CATG 5 cut(s) 91, 574, 628, 749, 944
CviQI GTAC 4 cut(s) 81, 404, 422, 1251
DdeI CTNAG 6 cut(s) 48, 491, 738, 783, 1041, 1311
DpnI GATC 8 cut(s) 597, 615, 774, 924, 963, 1065, 1070, 1294
DpnII GATC 8 cut(s) 595, 613, 772, 922, 961, 1063, 1068, 1292
DraIII CACNNNGTG 1 cut(s) 1181
Eam1104I CTCTTC 5 cut(s) 276, 318, 918, 966, 1282
EarI CTCTTC 5 cut(s) 276, 318, 918, 966, 1282
Eco130I CCWWGG 4 cut(s) 360, 573, 849, 1260
Eco24I GRGCYC 2 cut(s) 56, 1226
Eco31I GGTCTC 1 cut(s) 858
Eco47III AGCGCT 1 cut(s) 129
Eco57I CTGAAG 1 cut(s) 861
Eco81I CCTNAGG 1 cut(s) 48
Eco88I CYCGRG 1 cut(s) 143
EcoO109I RGGNCCY 2 cut(s) 52, 53
EcoRII CCWGG 4 cut(s) 542, 719, 998, 1155
EcoT14I CCWWGG 4 cut(s) 360, 573, 849, 1260
EcoT38I GRGCYC 2 cut(s) 56, 1226
ErhI CCWWGG 4 cut(s) 360, 573, 849, 1260
FaeI CATG 5 cut(s) 94, 577, 631, 752, 947
FaqI GGGAC 1 cut(s) 682
FatI CATG 5 cut(s) 90, 573, 627, 748, 943
FauI CCCGC 1 cut(s) 228
FblI GTMKAC 1 cut(s) 694
Fnu4HI GCNGC 3 cut(s) 570, 788, 1257
FokI GGATG 3 cut(s) 263, 395, 429
FriOI GRGCYC 2 cut(s) 56, 1226
Fsp4HI GCNGC 3 cut(s) 570, 788, 1257
FspBI CTAG 3 cut(s) 447, 953, 1095
GlaI GCGC 4 cut(s) 129, 212, 224, 684
GluI GCNGC 3 cut(s) 570, 788, 1257
GsaI CCCAGC 3 cut(s) 669, 705, 980
GsuI CTGGAG 3 cut(s) 86, 294, 360
HaeII RGCGCY 2 cut(s) 131, 214
HaeIII GGCC 5 cut(s) 54, 124, 219, 359, 1028
HhaI GCGC 4 cut(s) 130, 213, 225, 685
Hin1I GRCGYC 1 cut(s) 1161
Hin1II CATG 5 cut(s) 94, 577, 631, 752, 947
Hin6I GCGC 4 cut(s) 128, 211, 223, 683
HinP1I GCGC 4 cut(s) 128, 211, 223, 683
HincII GTYRAC 1 cut(s) 202
HindII GTYRAC 1 cut(s) 202
HindIII AAGCTT 1 cut(s) 1109
HinfI GANTC 9 cut(s) 164, 386, 536, 805, 845, 910, 1073, 1132, 1313
HphI GGTGA 2 cut(s) 159, 180
Hpy166II GTNNAC 3 cut(s) 202, 472, 695
Hpy188I TCNGA 7 cut(s) 244, 583, 739, 1068, 1149, 1312, 1321
Hpy188III TCNNGA 8 cut(s) 47, 143, 232, 273, 599, 776, 1136, 1284
Hpy8I GTNNAC 3 cut(s) 202, 472, 695
HpyAV CCTTC 2 cut(s) 236, 1189
HpyCH4III ACNGT 3 cut(s) 403, 891, 931
HpyCH4IV ACGT 2 cut(s) 468, 1161
HpyCH4V TGCA 4 cut(s) 353, 920, 968, 1334
HpyF10VI GCNNNNNNNGC 8 cut(s) 28, 37, 134, 350, 575, 682, 1177, 1262
HpyF3I CTNAG 6 cut(s) 48, 491, 738, 783, 1041, 1311
HpySE526I ACGT 2 cut(s) 468, 1161
Hsp92I GRCGYC 1 cut(s) 1161
Hsp92II CATG 5 cut(s) 94, 577, 631, 752, 947
HspAI GCGC 4 cut(s) 128, 211, 223, 683
Kzo9I GATC 8 cut(s) 595, 613, 772, 922, 961, 1063, 1068, 1292
LguI GCTCTTC 1 cut(s) 966
LmnI GCTCC 2 cut(s) 244, 495
Lsp1109I GCAGC 3 cut(s) 556, 774, 1268
LweI GCATC 3 cut(s) 27, 706, 958
MaeI CTAG 3 cut(s) 447, 953, 1095
MaeII ACGT 2 cut(s) 468, 1161
MaeIII GTNAC 5 cut(s) 236, 634, 641, 931, 1103
MalI GATC 8 cut(s) 597, 615, 774, 924, 963, 1065, 1070, 1294
MboI GATC 8 cut(s) 595, 613, 772, 922, 961, 1063, 1068, 1292
MfeI CAATTG 1 cut(s) 1227
MflI RGATCY 2 cut(s) 922, 1292
MhlI GDGCHC 2 cut(s) 56, 1226
MluCI AATT 4 cut(s) 13, 1012, 1117, 1227
MlyI GAGTC 4 cut(s) 814, 904, 1082, 1322
MmeI TCCRAC 2 cut(s) 1038, 1322
MroXI GAANNNNTTC 1 cut(s) 1143
MslI CAYNNNNRTG 3 cut(s) 432, 447, 1119
MspR9I CCNGG 4 cut(s) 544, 721, 1000, 1157
MunI CAATTG 1 cut(s) 1227
Mva1269I GAATGC 1 cut(s) 31
MvaI CCWGG 4 cut(s) 544, 721, 1000, 1157
MvnI CGCG 1 cut(s) 223
MwoI GCNNNNNNNGC 8 cut(s) 28, 37, 134, 350, 575, 682, 1177, 1262
NcoI CCATGG 1 cut(s) 573
NdeII GATC 8 cut(s) 595, 613, 772, 922, 961, 1063, 1068, 1292
NlaIII CATG 5 cut(s) 94, 577, 631, 752, 947
NlaIV GGNNCC 4 cut(s) 54, 55, 298, 1154
NmuCI GTSAC 2 cut(s) 634, 1103
PciSI GCTCTTC 1 cut(s) 966
PcsI WCGNNNNNNNCGW 1 cut(s) 141
PctI GAATGC 1 cut(s) 31
PdmI GAANNNNTTC 1 cut(s) 1143
PfeI GAWTC 5 cut(s) 164, 386, 536, 845, 1132
PkrI GCNGC 3 cut(s) 571, 789, 1258
PleI GAGTC 4 cut(s) 813, 904, 1081, 1321
PpsI GAGTC 4 cut(s) 813, 904, 1081, 1321
Psp6I CCWGG 4 cut(s) 542, 719, 998, 1155
PspFI CCCAGC 3 cut(s) 665, 701, 976
PspGI CCWGG 4 cut(s) 542, 719, 998, 1155
PspN4I GGNNCC 4 cut(s) 54, 55, 298, 1154
PspOMI GGGCCC 1 cut(s) 52
PspPI GGNCC 4 cut(s) 52, 53, 218, 1026
PstI CTGCAG 2 cut(s) 922, 970
PsuI RGATCY 2 cut(s) 922, 1292
RsaI GTAC 4 cut(s) 82, 405, 423, 1252
RsaNI GTAC 4 cut(s) 81, 404, 422, 1251
RseI CAYNNNNRTG 3 cut(s) 432, 447, 1119
SapI GCTCTTC 1 cut(s) 966
SatI GCNGC 3 cut(s) 570, 788, 1257
Sau3AI GATC 8 cut(s) 595, 613, 772, 922, 961, 1063, 1068, 1292
Sau96I GGNCC 4 cut(s) 52, 53, 218, 1026
SchI GAGTC 4 cut(s) 814, 904, 1082, 1322
ScrFI CCNGG 4 cut(s) 544, 721, 1000, 1157
SduI GDGCHC 2 cut(s) 56, 1226
SfaNI GCATC 3 cut(s) 27, 706, 958
SfcI CTRYAG 2 cut(s) 918, 966
SmiMI CAYNNNNRTG 3 cut(s) 432, 447, 1119
SmlI CTYRAG 1 cut(s) 230
SmoI CTYRAG 1 cut(s) 230
Sse9I AATT 4 cut(s) 13, 1012, 1117, 1227
SsiI CCGC 2 cut(s) 221, 829
SspMI CTAG 3 cut(s) 447, 953, 1095
StyD4I CCNGG 4 cut(s) 542, 719, 998, 1155
StyI CCWWGG 4 cut(s) 360, 573, 849, 1260
TaaI ACNGT 3 cut(s) 403, 891, 931
TaiI ACGT 2 cut(s) 471, 1164
TaqI TCGA 5 cut(s) 35, 109, 507, 1071, 1076
TaqII GACCGA 1 cut(s) 76
TasI AATT 4 cut(s) 13, 1012, 1117, 1227
TatI WGTACW 1 cut(s) 421
TfiI GAWTC 5 cut(s) 164, 386, 536, 845, 1132
TscAI CASTG 4 cut(s) 384, 406, 875, 934
TseFI GTSAC 2 cut(s) 634, 1103
TseI GCWGC 3 cut(s) 569, 787, 1256
Tsp45I GTSAC 2 cut(s) 634, 1103
TspDTI ATGAA 5 cut(s) 294, 336, 723, 1103, 1145
TspGWI ACGGA 1 cut(s) 666
TspRI CASTG 4 cut(s) 384, 406, 875, 934
XapI RAATTY 1 cut(s) 1012
XcmI CCANNNNNNNNNTGG 1 cut(s) 212
XmiI GTMKAC 1 cut(s) 694
XmnI GAANNNNTTC 1 cut(s) 1143
XspI CTAG 3 cut(s) 447, 953, 1095
ZraI GACGTC 1 cut(s) 1162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.