Rroxscaffold_2G00141680

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
79890830 .. 79894838
4009 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00141680.1

Sequence Viewer

Length: 1455 bp
ATGCCGACTTTCTCTGTCATAGCTTTAGATAGGTTATTAGAACCTGGAGCTTCTTCCAAATCTGCCGACATGTCTGTTCCTAATTCCAAGCCTGTTTCGCATTCGATGCCTGTTCCCGAGGGCCCCTTGAAGCTGGAGAGGAGGAATAGTACCTCGGTTATGGAGAGGAAGCCTCATCGACCTCCAATAAGGCCAGCGCTCTACGCCACTCCCGAGACAACTCCACTACCTGATTCACCCACTTCTTTCCCTCCCTCACCTTACATCGTCAACCACAAGCGCCGTGGCCCGCGCCTTCTCAAGAGTTACTCGGAGCAGGATGTATCCTTACACCAGAAATCTGGAGATGAAGAGAAACTGAATGGTTCCATACACCAGAAACCTGGAGATGAAGAGAAACTGAATGGTTCCATACACCAGAAACCTGGAGATGAAGAGAAACTGAATGGCATTGCCAACAATGCAGAGGCCAAGGTGGAAGCTTCTCCAGTGGATGATTCACTTACTTTCACTCTACCCAAGCCAAGTCAAGTACAACATTCAAGTGGTATCCATCCTAGTGGTAGTAGCAATGGCAACCTTGACACCAGTAATGGGGTTCTTAGGAGCAGTAGTGTCGAACTGGGTGCTAGTAGTATGACTAATGGTTCAGCCAGGGAAGATGATTTGTTCCAGCAAGCTGCCATGGCTTCCGAAAGAGATAGTGATCGTGATGATTTCTTTGATCCAAAAGACAACATGAGTGTCACAAGTAACACAGACGGAGAGGGAAATGCTGGGACAGAGCGTTCTGCGTCTATGAGTATACCTGCTGGGGAGTTTTACGATGCCTGGGAAGAACTTTCATCTGAGGGTGGTCATGGGAAACAGCTTTCTGCTTGTGATCTTGAAACTGAGCTGCGTGAGATGAGATTGAGTCTTGTGATGGAGATAGAAAAGCGGAAGCAAGCTGAAGAATCCTTGGATAACTTGCGAAACCAGTGGCAGAGGATTAGGCAACAGTTATCTCTTGTAGGATTGACTCTTCCTGCAGACCCCACTGTTACAACAGAGCATGAGCAGCAAGGTTCTGATCCTGCAGAAGAGCTGGGGCAACAGCTTTATCTTGCCAGGTTTGTATCAAATTCTATTGGGAGGGCCATAGCAAGGGCTGAGATGGAGGCAGAGTTGGAAGATCAGATCGAGTCAAAGAACTTTGAGATTTCTAGGTTGTGTGACAAGCTTCATAATTATGAGGCTATGAATCAGGAAATGGTTCAGAGGAACCAGGATGTCATTGAGCTGGCACGGCGTGAGAGGGAGAAGAAGGCAAAACGACAAAGGTGGGTCTGGGGCTCAATTGCTACTGCCCTCACACTTGGTACAGCAGCCTTGGCATACTCTTATTATCCAACTGGAAGAGGATCTCCAACCTACCATTCTGAGTCGTCCGAGAGTGATAATGCAGGCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

484

Amino Acids

53.39

Weight (kDa)

5.17

Isoelectric Point (pI)

56.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 817
AccI GTMKAC 1 cut(s) 805
AccII CGCG 1 cut(s) 292
AciI CCGC 2 cut(s) 290, 940
AclWI GGATC 3 cut(s) 719, 1067, 1411
AcsI RAATTY 1 cut(s) 1123
AcuI CTGAAG 1 cut(s) 972
AdeI CACNNNGTG 1 cut(s) 1292
AfaI GTAC 3 cut(s) 151, 534, 1363
AfeI AGCGCT 1 cut(s) 198
AfiI CCNNNNNNNGG 2 cut(s) 594, 1146
AflIII ACRYGT 1 cut(s) 69
AgsI TTSAA 3 cut(s) 130, 543, 890
AjnI CCWGG 7 cut(s) 43, 382, 424, 653, 830, 1109, 1266
AjuI GAANNNNNNNTTGG 2 cut(s) 1402, 1434
AloI GAACNNNNNNTCC 2 cut(s) 772, 804
Alw26I GTCTC 1 cut(s) 209
AlwI GGATC 3 cut(s) 719, 1067, 1411
Ama87I CYCGRG 2 cut(s) 116, 212
Aor51HI AGCGCT 1 cut(s) 198
AoxI GGCC 5 cut(s) 121, 191, 286, 468, 1137
ApaI GGGCCC 1 cut(s) 125
ApeKI GCWGC 4 cut(s) 680, 898, 1060, 1367
ApoI RAATTY 1 cut(s) 1123
Asp700I GAANNNNTTC 1 cut(s) 1254
AspLEI GCGC 3 cut(s) 199, 282, 294
AspS9I GGNCC 4 cut(s) 121, 122, 287, 1137
AsuHPI GGTGA 2 cut(s) 228, 249
AvaI CYCGRG 2 cut(s) 116, 212
BaeGI GKGCMC 1 cut(s) 125
BanII GRGCYC 2 cut(s) 125, 1337
BbvI GCAGC 4 cut(s) 667, 885, 1072, 1379
BccI CCATC 3 cut(s) 561, 919, 1150
BceAI ACGGC 2 cut(s) 267, 1304
BcgI CGANNNNNNTGC 4 cut(s) 598, 608, 632, 642
BciT130I CCWGG 7 cut(s) 45, 384, 426, 655, 832, 1111, 1268
BciVI GTATCC 2 cut(s) 334, 560
BcoDI GTCTC 1 cut(s) 209
BfaI CTAG 3 cut(s) 558, 630, 1206
BfmI CTRYAG 2 cut(s) 1029, 1077
BfoI RGCGCY 2 cut(s) 200, 283
BfuAI ACCTGC 1 cut(s) 817
BfuI GTATCC 2 cut(s) 334, 560
BisI GCNGC 4 cut(s) 681, 899, 1061, 1368
BlsI GCNGC 4 cut(s) 682, 900, 1062, 1369
Bme1390I CCNGG 7 cut(s) 45, 384, 426, 655, 832, 1111, 1268
BmeT110I CYCGRG 2 cut(s) 116, 212
BmgT120I GGNCC 4 cut(s) 121, 122, 287, 1137
BmiI GGNNCC 5 cut(s) 123, 124, 367, 409, 1265
BmrFI CCNGG 7 cut(s) 45, 384, 426, 655, 832, 1111, 1268
BmrI ACTGGG 1 cut(s) 632
BmsI GCATC 2 cut(s) 96, 817
BmuI ACTGGG 1 cut(s) 632
BplI GAGNNNNNCTC 2 cut(s) 157, 189
BpmI CTGGAG 6 cut(s) 66, 155, 363, 405, 447, 471
BpuEI CTTGAG 1 cut(s) 284
BsaBI GATNNNNATC 1 cut(s) 705
BsaJI CCNNGG 9 cut(s) 117, 153, 283, 471, 654, 684, 831, 960, 1371
BsaXI ACNNNNNCTCC 6 cut(s) 133, 163, 598, 628, 1151, 1181
Bsc4I CCNNNNNNNGG 2 cut(s) 594, 1146
Bse1I ACTGG 5 cut(s) 488, 588, 627, 979, 1399
Bse3DI GCAATG 2 cut(s) 450, 577
Bse8I GATNNNNATC 1 cut(s) 705
BseBI CCWGG 7 cut(s) 45, 384, 426, 655, 832, 1111, 1268
BseDI CCNNGG 9 cut(s) 117, 153, 283, 471, 654, 684, 831, 960, 1371
BseGI GGATG 4 cut(s) 325, 499, 553, 1276
BseJI GATNNNNATC 1 cut(s) 705
BseLI CCNNNNNNNGG 2 cut(s) 594, 1146
BseMI GCAATG 2 cut(s) 450, 577
BseMII CTCAG 4 cut(s) 840, 885, 1143, 1413
BseNI ACTGG 5 cut(s) 488, 588, 627, 979, 1399
BseRI GAGGAG 1 cut(s) 154
BseSI GKGCMC 1 cut(s) 125
BseXI GCAGC 4 cut(s) 667, 885, 1072, 1379
BseYI CCCAGC 3 cut(s) 776, 812, 1087
Bsh1236I CGCG 1 cut(s) 292
BshFI GGCC 5 cut(s) 123, 193, 288, 470, 1139
BsiHKCI CYCGRG 2 cut(s) 116, 212
BslFI GGGAC 1 cut(s) 793
BslI CCNNNNNNNGG 2 cut(s) 594, 1146
BsmAI GTCTC 1 cut(s) 209
BsmFI GGGAC 1 cut(s) 793
BsmI GAATGC 1 cut(s) 100
BsnI GGCC 5 cut(s) 123, 193, 288, 470, 1139
BsoBI CYCGRG 2 cut(s) 116, 212
Bsp120I GGGCCC 1 cut(s) 121
Bsp1286I GDGCHC 2 cut(s) 125, 1337
Bsp143I GATC 7 cut(s) 706, 724, 883, 1072, 1174, 1179, 1403
Bsp19I CCATGG 1 cut(s) 684
BspACI CCGC 2 cut(s) 290, 940
BspANI GGCC 5 cut(s) 123, 193, 288, 470, 1139
BspCNI CTCAG 4 cut(s) 841, 886, 1144, 1414
BspFNI CGCG 1 cut(s) 292
BspLI GGNNCC 5 cut(s) 123, 124, 367, 409, 1265
BspMAI CTGCAG 2 cut(s) 1033, 1081
BspMI ACCTGC 1 cut(s) 817
BspPI GGATC 3 cut(s) 719, 1067, 1411
BspQI GCTCTTC 1 cut(s) 1077
BsrDI GCAATG 2 cut(s) 450, 577
BsrI ACTGG 5 cut(s) 488, 588, 627, 979, 1399
BssECI CCNNGG 9 cut(s) 117, 153, 283, 471, 654, 684, 831, 960, 1371
BssMI GATC 7 cut(s) 706, 724, 883, 1072, 1174, 1179, 1403
BssNAI GTATAC 1 cut(s) 806
BssT1I CCWWGG 4 cut(s) 471, 684, 960, 1371
Bst1107I GTATAC 1 cut(s) 806
Bst2UI CCWGG 7 cut(s) 45, 384, 426, 655, 832, 1111, 1268
Bst4CI ACNGT 2 cut(s) 1002, 1042
Bst6I CTCTTC 6 cut(s) 345, 387, 429, 1029, 1077, 1393
BstAPI GCANNNNNTGC 1 cut(s) 106
BstC8I GCNNGC 6 cut(s) 195, 290, 678, 948, 1284, 1447
BstDEI CTNAG 5 cut(s) 602, 849, 894, 1152, 1422
BstDSI CCRYGG 2 cut(s) 283, 684
BstF5I GGATG 4 cut(s) 325, 499, 553, 1276
BstFNI CGCG 1 cut(s) 292
BstH2I RGCGCY 2 cut(s) 200, 283
BstHHI GCGC 3 cut(s) 199, 282, 294
BstKTI GATC 7 cut(s) 709, 727, 886, 1075, 1177, 1182, 1406
BstMAI GTCTC 1 cut(s) 209
BstMBI GATC 7 cut(s) 706, 724, 883, 1072, 1174, 1179, 1403
BstMWI GCNNNNNNNGC 8 cut(s) 97, 106, 203, 461, 686, 1060, 1288, 1373
BstNI CCWGG 7 cut(s) 45, 384, 426, 655, 832, 1111, 1268
BstNSI RCATGY 1 cut(s) 73
BstSCI CCNGG 7 cut(s) 43, 382, 424, 653, 830, 1109, 1266
BstSFI CTRYAG 2 cut(s) 1029, 1077
BstSLI GKGCMC 1 cut(s) 125
BstUI CGCG 1 cut(s) 292
BstV1I GCAGC 4 cut(s) 667, 885, 1072, 1379
BstX2I RGATCY 1 cut(s) 1403
BstXI CCANNNNNNTGG 4 cut(s) 341, 383, 425, 560
BstYI RGATCY 1 cut(s) 1403
BstZ17I GTATAC 1 cut(s) 806
BsuI GTATCC 2 cut(s) 334, 560
BsuRI GGCC 5 cut(s) 123, 193, 288, 470, 1139
BtgI CCRYGG 2 cut(s) 283, 684
BtsCI GGATG 4 cut(s) 325, 499, 553, 1276
BtsIMutI CAGTG 3 cut(s) 495, 986, 1038
BveI ACCTGC 1 cut(s) 817
Cac8I GCNNGC 6 cut(s) 195, 290, 678, 948, 1284, 1447
CfoI GCGC 3 cut(s) 199, 282, 294
Cfr13I GGNCC 4 cut(s) 121, 122, 287, 1137
CseI GACGC 1 cut(s) 783
Csp6I GTAC 3 cut(s) 150, 533, 1362
CspCI CAANNNNNGTGG 2 cut(s) 265, 300
CviAII CATG 5 cut(s) 70, 685, 739, 860, 1055
CviQI GTAC 3 cut(s) 150, 533, 1362
DdeI CTNAG 5 cut(s) 602, 849, 894, 1152, 1422
DpnI GATC 7 cut(s) 708, 726, 885, 1074, 1176, 1181, 1405
DpnII GATC 7 cut(s) 706, 724, 883, 1072, 1174, 1179, 1403
DraIII CACNNNGTG 1 cut(s) 1292
Eam1104I CTCTTC 6 cut(s) 345, 387, 429, 1029, 1077, 1393
EarI CTCTTC 6 cut(s) 345, 387, 429, 1029, 1077, 1393
Eco130I CCWWGG 4 cut(s) 471, 684, 960, 1371
Eco24I GRGCYC 2 cut(s) 125, 1337
Eco47III AGCGCT 1 cut(s) 198
Eco57I CTGAAG 1 cut(s) 972
Eco88I CYCGRG 2 cut(s) 116, 212
EcoO109I RGGNCCY 2 cut(s) 121, 122
EcoRII CCWGG 7 cut(s) 43, 382, 424, 653, 830, 1109, 1266
EcoT14I CCWWGG 4 cut(s) 471, 684, 960, 1371
EcoT38I GRGCYC 2 cut(s) 125, 1337
ErhI CCWWGG 4 cut(s) 471, 684, 960, 1371
FaeI CATG 5 cut(s) 73, 688, 742, 863, 1058
FaqI GGGAC 1 cut(s) 793
FatI CATG 5 cut(s) 69, 684, 738, 859, 1054
FauI CCCGC 1 cut(s) 297
FblI GTMKAC 1 cut(s) 805
Fnu4HI GCNGC 4 cut(s) 681, 899, 1061, 1368
FokI GGATG 4 cut(s) 332, 506, 540, 1283
FriOI GRGCYC 2 cut(s) 125, 1337
Fsp4HI GCNGC 4 cut(s) 681, 899, 1061, 1368
FspBI CTAG 3 cut(s) 558, 630, 1206
GlaI GCGC 3 cut(s) 198, 281, 293
GluI GCNGC 4 cut(s) 681, 899, 1061, 1368
GsaI CCCAGC 3 cut(s) 780, 816, 1091
GsuI CTGGAG 6 cut(s) 66, 155, 363, 405, 447, 471
HaeII RGCGCY 2 cut(s) 200, 283
HaeIII GGCC 5 cut(s) 123, 193, 288, 470, 1139
HgaI GACGC 1 cut(s) 783
HhaI GCGC 3 cut(s) 199, 282, 294
Hin1II CATG 5 cut(s) 73, 688, 742, 863, 1058
Hin6I GCGC 3 cut(s) 197, 280, 292
HinP1I GCGC 3 cut(s) 197, 280, 292
HincII GTYRAC 1 cut(s) 271
HindII GTYRAC 1 cut(s) 271
HindIII AAGCTT 2 cut(s) 480, 1220
HinfI GANTC 8 cut(s) 233, 497, 916, 956, 1021, 1184, 1243, 1424
HphI GGTGA 2 cut(s) 228, 249
Hpy166II GTNNAC 2 cut(s) 271, 806
Hpy188I TCNGA 8 cut(s) 313, 694, 850, 1072, 1179, 1260, 1423, 1432
Hpy188III TCNNGA 7 cut(s) 116, 212, 301, 342, 710, 887, 1247
Hpy8I GTNNAC 2 cut(s) 271, 806
HpyAV CCTTC 2 cut(s) 305, 1300
HpyCH4III ACNGT 2 cut(s) 1002, 1042
HpyCH4V TGCA 4 cut(s) 464, 1031, 1079, 1445
HpyF10VI GCNNNNNNNGC 8 cut(s) 97, 106, 203, 461, 686, 1060, 1288, 1373
HpyF3I CTNAG 5 cut(s) 602, 849, 894, 1152, 1422
Hsp92II CATG 5 cut(s) 73, 688, 742, 863, 1058
HspAI GCGC 3 cut(s) 197, 280, 292
Kzo9I GATC 7 cut(s) 706, 724, 883, 1072, 1174, 1179, 1403
LguI GCTCTTC 1 cut(s) 1077
LmnI GCTCC 3 cut(s) 47, 313, 606
Lsp1109I GCAGC 4 cut(s) 667, 885, 1072, 1379
LweI GCATC 2 cut(s) 96, 817
MaeI CTAG 3 cut(s) 558, 630, 1206
MaeIII GTNAC 5 cut(s) 305, 745, 752, 1042, 1214
MalI GATC 7 cut(s) 708, 726, 885, 1074, 1176, 1181, 1405
MboI GATC 7 cut(s) 706, 724, 883, 1072, 1174, 1179, 1403
MfeI CAATTG 1 cut(s) 1338
MflI RGATCY 1 cut(s) 1403
MhlI GDGCHC 2 cut(s) 125, 1337
MluCI AATT 4 cut(s) 82, 1123, 1228, 1338
MlyI GAGTC 4 cut(s) 925, 1015, 1193, 1433
MmeI TCCRAC 3 cut(s) 1149, 1415, 1433
MroXI GAANNNNTTC 1 cut(s) 1254
MslI CAYNNNNRTG 3 cut(s) 543, 558, 1230
MspR9I CCNGG 7 cut(s) 45, 384, 426, 655, 832, 1111, 1268
MunI CAATTG 1 cut(s) 1338
Mva1269I GAATGC 1 cut(s) 100
MvaI CCWGG 7 cut(s) 45, 384, 426, 655, 832, 1111, 1268
MvnI CGCG 1 cut(s) 292
MwoI GCNNNNNNNGC 8 cut(s) 97, 106, 203, 461, 686, 1060, 1288, 1373
NcoI CCATGG 1 cut(s) 684
NdeII GATC 7 cut(s) 706, 724, 883, 1072, 1174, 1179, 1403
NlaIII CATG 5 cut(s) 73, 688, 742, 863, 1058
NlaIV GGNNCC 5 cut(s) 123, 124, 367, 409, 1265
NmuCI GTSAC 2 cut(s) 745, 1214
NspI RCATGY 1 cut(s) 73
PciI ACATGT 1 cut(s) 69
PciSI GCTCTTC 1 cut(s) 1077
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PctI GAATGC 1 cut(s) 100
PdmI GAANNNNTTC 1 cut(s) 1254
PfeI GAWTC 4 cut(s) 233, 497, 956, 1243
PkrI GCNGC 4 cut(s) 682, 900, 1062, 1369
PleI GAGTC 4 cut(s) 924, 1015, 1192, 1432
PpsI GAGTC 4 cut(s) 924, 1015, 1192, 1432
PscI ACATGT 1 cut(s) 69
Psp6I CCWGG 7 cut(s) 43, 382, 424, 653, 830, 1109, 1266
PspFI CCCAGC 3 cut(s) 776, 812, 1087
PspGI CCWGG 7 cut(s) 43, 382, 424, 653, 830, 1109, 1266
PspN4I GGNNCC 5 cut(s) 123, 124, 367, 409, 1265
PspOMI GGGCCC 1 cut(s) 121
PspPI GGNCC 4 cut(s) 121, 122, 287, 1137
PstI CTGCAG 2 cut(s) 1033, 1081
PsuI RGATCY 1 cut(s) 1403
RsaI GTAC 3 cut(s) 151, 534, 1363
RsaNI GTAC 3 cut(s) 150, 533, 1362
RseI CAYNNNNRTG 3 cut(s) 543, 558, 1230
SapI GCTCTTC 1 cut(s) 1077
SatI GCNGC 4 cut(s) 681, 899, 1061, 1368
Sau3AI GATC 7 cut(s) 706, 724, 883, 1072, 1174, 1179, 1403
Sau96I GGNCC 4 cut(s) 121, 122, 287, 1137
SchI GAGTC 4 cut(s) 925, 1015, 1193, 1433
ScrFI CCNGG 7 cut(s) 45, 384, 426, 655, 832, 1111, 1268
SduI GDGCHC 2 cut(s) 125, 1337
SfaNI GCATC 2 cut(s) 96, 817
SfcI CTRYAG 2 cut(s) 1029, 1077
SmiMI CAYNNNNRTG 3 cut(s) 543, 558, 1230
SmlI CTYRAG 1 cut(s) 299
SmoI CTYRAG 1 cut(s) 299
Sse9I AATT 4 cut(s) 82, 1123, 1228, 1338
SsiI CCGC 2 cut(s) 290, 940
SspMI CTAG 3 cut(s) 558, 630, 1206
StyD4I CCNGG 7 cut(s) 43, 382, 424, 653, 830, 1109, 1266
StyI CCWWGG 4 cut(s) 471, 684, 960, 1371
TaaI ACNGT 2 cut(s) 1002, 1042
TaqI TCGA 4 cut(s) 104, 178, 618, 1182
TasI AATT 4 cut(s) 82, 1123, 1228, 1338
TatI WGTACW 1 cut(s) 532
TfiI GAWTC 4 cut(s) 233, 497, 956, 1243
TscAI CASTG 3 cut(s) 495, 986, 1045
TseFI GTSAC 2 cut(s) 745, 1214
TseI GCWGC 4 cut(s) 680, 898, 1060, 1367
Tsp45I GTSAC 2 cut(s) 745, 1214
TspDTI ATGAA 6 cut(s) 363, 405, 447, 834, 1214, 1256
TspGWI ACGGA 1 cut(s) 777
TspRI CASTG 3 cut(s) 495, 986, 1045
XapI RAATTY 1 cut(s) 1123
XceI RCATGY 1 cut(s) 73
XcmI CCANNNNNNNNNTGG 1 cut(s) 281
XmiI GTMKAC 1 cut(s) 805
XmnI GAANNNNTTC 1 cut(s) 1254
XspI CTAG 3 cut(s) 558, 630, 1206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.