Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0010423

Physical Location & Seq

Genomic Coordinates Reverse (-)

21878807 .. 21884000

Gene Structure 5194 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1257200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1380 bp

ATGTCATCTCTTCCAAATTCCAATTCGAAGCCTTTTTCGAGTTCAATGCCGGTTCCTGACTCCAAGCTGGAGAGGAGGAACAGCACCTCCGTTGTGGAGAAGAGGCCTCATCGACCTCAGATTAGGCCGGCCCTCTATGCTACTCCGGAGGCCACACCGCTCCCGGATTTGCCCACTTCATTTCCTCCCTCGCCTTACATCATCAACCACAAGCGCCGTGGTCCAAGGCTTATGAAGAGTTACTCGGAGCAGGATGTGTCCTTGCACCAAAAAGCTGGAGGTGGAGAGAAGCTCAATGGGGATGTCAACCGTGTGGAGGCCAAGGCGGTGAAGCTCAATGGGAATGTCAGCAACGCAGAGGCAAAGGTGGCAAATTCACCTGTTGATGATTTGAATACTTTTACTTTTTCGAAGCCTGTTGAAGTGCGTCATTCGAACGGTGTCCATCATTTCGTGAGCAGTAATGGGCAACTTAGAGGCAGTAATGTGGAACTAGGTAGTAGTAGCGAGCATGAAGATAACTTCTATGCGTCCAACAAGAGAAGCAGTGATGTGGAACTGAGTAATGGTTCTGCTAGGGAAGATGATTTGTTGAAGCAAGTTGCCATGAGTCCAGAGAGAGATAGTGAACGTGAAGATTTCGTTGATCCGAAAGACTCCATGAGTGTCGCAAGTTACAACACTGATGGAGAGGGAAATTTTGGGGCAGAGCGTTCTGCACAGACCAGTACACCCATGGGGGAATTTTATGATGCTTGGGATGAACTTTCATCTGAGAGCGGGCAAGGGCAGCAGCTTTCTGTTTCTGACGTTGAAGTTGAATTGCGTGAAATGAGATTGAGCCTCATAATGGAGATAGAGAAGCGGAAGCAAGTAGAAGAATCCTTGAATAACATGCGAAGGCAGTGGCAGAGGATTAGGGAACAATTATCTCTTGTAGGATTCACACTCCCTGAAGATCCCACTGTTGCAAGTGGTCACGAGCTACTAGGTTCTGATCCTGCAGAAGATCTGTACCAACAAGTTTATCTTGCTAGGTTTGTATCAAATACCATTGGGAGGGGATTGATAAGGGCTGAGATGGAGATGGAGATGGAAGCTCAGGTCGAGTCAAAGAACTTTGAGATTGCTCGGTTGATGGACAAACTTCGTAACTATGAGGCTATGAATCAGGAAATGGTTCAGAGGAATCAGGATGTTCTCGAGATGGCACGGCGTGACAGGGAGAGAAGGGAAAGAAGACAGAGATGGGTATGGGGCTCAATCGCTACTGCCCTTACTCTTGGCACTGCAGCCTTGGCATACTCATATATCCCGTCTAGCAGGGGATCGCCAAGCTTTGATTCTGAGGTTCCTGAAAGGAGTGATGCAGGCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

460

Amino Acids

51.52

Weight (kDa)

5.33

Isoelectric Point (pI)

57.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010423)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50910 AT5G66480
fragaria_vesca	FvH4_1g12900 FvH4_1g12900
malus_domestica	MD02G1143900.v1.1 MD15G1257200.v1.1
prunus_persica	Prupe.7G157800_v2.0.a1
pyrus_communis	pycom02g11380 pycom15g22510
rosa_chinensis	RchiOBHm_Chr2g0100981
rosa_laevigata	RLG00000017033
rosa_multiflora	Rmu_co8514483.1_g000001 Rmu_sc0001862.1_g000011
rosa_roxburghii	Rroxscaffold_2G00141680
rosa_rugosa	Rorug02G0094700 Rorug02G0094800
rosa_samantha	Rh2AG141900 Rh2BG147100 Rh2CG148400 Rh2DG147600
rosa_wichuraiana	Rw2G011140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	160, 780
AccIII	TCCGGA	1 cut(s)	145
AciI	CCGC	4 cut(s)	158, 326, 780, 865
AclWI	GGATC	4 cut(s)	641, 953, 992, 1336
AcsI	RAATTY	4 cut(s)	16, 373, 697, 743
AcuI	CTGAAG	1 cut(s)	975
AdeI	CACNNNGTG	1 cut(s)	1217
AfaI	GTAC	2 cut(s)	730, 1016
AfiI	CCNNNNNNNGG	3 cut(s)	316, 850, 1059
AgsI	TTSAA	7 cut(s)	45, 394, 422, 595, 815, 821, 889
AjuI	GAANNNNNNNTTGG	4 cut(s)	7, 39, 1327, 1359
AloI	GAACNNNNNNTCC	2 cut(s)	71, 103
AluBI	AGCT	8 cut(s)	67, 275, 292, 334, 796, 985, 1100, 1338
AluI	AGCT	8 cut(s)	67, 275, 292, 334, 796, 985, 1100, 1338
AlwI	GGATC	4 cut(s)	641, 953, 992, 1336
Ama87I	CYCGRG	1 cut(s)	1202
Aor13HI	TCCGGA	1 cut(s)	145
AoxI	GGCC	5 cut(s)	104, 125, 129, 150, 318
ApeKI	GCWGC	3 cut(s)	790, 793, 1292
ApoI	RAATTY	4 cut(s)	16, 373, 697, 743
Asp700I	GAANNNNTTC	1 cut(s)	1179
AspLEI	GCGC	1 cut(s)	216
AspS9I	GGNCC	2 cut(s)	130, 221
AsuC2I	CCSGG	1 cut(s)	164
AsuHPI	GGTGA	2 cut(s)	340, 369
AsuII	TTCGAA	3 cut(s)	26, 410, 434
AvaI	CYCGRG	1 cut(s)	1202
AvaII	GGWCC	1 cut(s)	221
BanII	GRGCYC	1 cut(s)	1262
BauI	CACGAG	1 cut(s)	980
BbsI	GAAGAC	1 cut(s)	1246
BbvI	GCAGC	3 cut(s)	802, 805, 1304
BccI	CCATC	8 cut(s)	453, 680, 1075, 1081, 1087, 1132, 1201, 1242
BceAI	ACGGC	2 cut(s)	201, 1229
BcgI	CGANNNNNNTGC	2 cut(s)	28, 62
BcnI	CCSGG	1 cut(s)	164
BfaI	CTAG	5 cut(s)	494, 576, 989, 1035, 1320
BfmI	CTRYAG	2 cut(s)	1002, 1290
BfoI	RGCGCY	1 cut(s)	217
BglII	AGATCT	1 cut(s)	1009
BisI	GCNGC	3 cut(s)	791, 794, 1293
BlsI	GCNGC	3 cut(s)	792, 795, 1294
Bme1390I	CCNGG	1 cut(s)	164
Bme18I	GGWCC	1 cut(s)	221
BmeT110I	CYCGRG	1 cut(s)	1202
BmgT120I	GGNCC	2 cut(s)	130, 221
BmiI	GGNNCC	2 cut(s)	54, 1353
BmrFI	CCNGG	1 cut(s)	164
BmsI	GCATC	2 cut(s)	742, 1357
BpiI	GAAGAC	1 cut(s)	1246
BplI	GAGNNNNNCTC	2 cut(s)	276, 308
BpmI	CTGGAG	2 cut(s)	89, 297
Bpu10I	CCTNAGC	1 cut(s)	1101
Bpu14I	TTCGAA	3 cut(s)	26, 410, 434
BpuMI	CCSGG	1 cut(s)	164
BsaJI	CCNNGG	5 cut(s)	217, 224, 321, 735, 1296
BsaWI	WCCGGW	1 cut(s)	145
BsaXI	ACNNNNNCTCC	2 cut(s)	71, 101
Bsc4I	CCNNNNNNNGG	3 cut(s)	316, 850, 1059
Bse118I	RCCGGY	2 cut(s)	49, 127
Bse1I	ACTGG	1 cut(s)	726
BseAI	TCCGGA	1 cut(s)	145
BseDI	CCNNGG	5 cut(s)	217, 224, 321, 735, 1296
BseGI	GGATG	4 cut(s)	259, 307, 766, 1201
BseLI	CCNNNNNNNGG	3 cut(s)	316, 850, 1059
BseMII	CTCAG	6 cut(s)	131, 551, 765, 1068, 1115, 1338
BseNI	ACTGG	1 cut(s)	726
BseRI	GAGGAG	1 cut(s)	88
BseXI	GCAGC	3 cut(s)	802, 805, 1304
BsgI	GTGCAG	1 cut(s)	702
BshFI	GGCC	5 cut(s)	106, 127, 131, 152, 320
BsiHKCI	CYCGRG	1 cut(s)	1202
BsiSI	CCGG	4 cut(s)	50, 128, 146, 164
BslI	CCNNNNNNNGG	3 cut(s)	316, 850, 1059
BsnI	GGCC	5 cut(s)	106, 127, 131, 152, 320
BsoBI	CYCGRG	1 cut(s)	1202
Bsp119I	TTCGAA	3 cut(s)	26, 410, 434
Bsp1286I	GDGCHC	1 cut(s)	1262
Bsp13I	TCCGGA	1 cut(s)	145
Bsp143I	GATC	5 cut(s)	646, 958, 997, 1009, 1328
Bsp19I	CCATGG	1 cut(s)	735
BspACI	CCGC	4 cut(s)	158, 326, 780, 865
BspANI	GGCC	5 cut(s)	106, 127, 131, 152, 320
BspCNI	CTCAG	6 cut(s)	130, 552, 766, 1069, 1114, 1339
BspEI	TCCGGA	1 cut(s)	145
BspLI	GGNNCC	2 cut(s)	54, 1353
BspMAI	CTGCAG	2 cut(s)	1006, 1294
BspPI	GGATC	4 cut(s)	641, 953, 992, 1336
BspT104I	TTCGAA	3 cut(s)	26, 410, 434
BsrBI	CCGCTC	2 cut(s)	160, 780
BsrFI	RCCGGY	2 cut(s)	49, 127
BsrI	ACTGG	1 cut(s)	726
BssAI	RCCGGY	2 cut(s)	49, 127
BssECI	CCNNGG	5 cut(s)	217, 224, 321, 735, 1296
BssMI	GATC	5 cut(s)	646, 958, 997, 1009, 1328
BssSI	CACGAG	1 cut(s)	980
BssT1I	CCWWGG	4 cut(s)	224, 321, 735, 1296
Bst2BI	CACGAG	1 cut(s)	980
Bst4CI	ACNGT	3 cut(s)	311, 440, 967
Bst6I	CTCTTC	3 cut(s)	15, 95, 230
BstBI	TTCGAA	3 cut(s)	26, 410, 434
BstC8I	GCNNGC	4 cut(s)	129, 509, 782, 1372
BstDEI	CTNAG	7 cut(s)	117, 473, 560, 774, 1077, 1101, 1347
BstDSI	CCRYGG	2 cut(s)	217, 735
BstF5I	GGATG	4 cut(s)	259, 307, 766, 1201
BstH2I	RGCGCY	1 cut(s)	217
BstHHI	GCGC	1 cut(s)	216
BstKTI	GATC	5 cut(s)	649, 961, 1000, 1012, 1331
BstMBI	GATC	5 cut(s)	646, 958, 997, 1009, 1328
BstMWI	GCNNNNNNNGC	4 cut(s)	137, 368, 790, 1298
BstNSI	RCATGY	1 cut(s)	898
BstSCI	CCNGG	1 cut(s)	162
BstSFI	CTRYAG	2 cut(s)	1002, 1290
BstV1I	GCAGC	3 cut(s)	802, 805, 1304
BstV2I	GAAGAC	1 cut(s)	1246
BstX2I	RGATCY	2 cut(s)	958, 1009
BstXI	CCANNNNNNTGG	1 cut(s)	275
BstYI	RGATCY	2 cut(s)	958, 1009
BsuRI	GGCC	5 cut(s)	106, 127, 131, 152, 320
BtgI	CCRYGG	2 cut(s)	217, 735
BtsCI	GGATG	4 cut(s)	259, 307, 766, 1201
BtsI	GCAGTG	3 cut(s)	553, 911, 1287
BtsIMutI	CAGTG	5 cut(s)	553, 681, 911, 963, 1287
Cac8I	GCNNGC	4 cut(s)	129, 509, 782, 1372
CfoI	GCGC	1 cut(s)	216
Cfr10I	RCCGGY	2 cut(s)	49, 127
Cfr13I	GGNCC	2 cut(s)	130, 221
CseI	GACGC	2 cut(s)	416, 519
Csp6I	GTAC	2 cut(s)	729, 1015
CspCI	CAANNNNNGTGG	2 cut(s)	199, 234
CviAII	CATG	5 cut(s)	512, 607, 661, 736, 895
CviQI	GTAC	2 cut(s)	729, 1015
DdeI	CTNAG	7 cut(s)	117, 473, 560, 774, 1077, 1101, 1347
DpnI	GATC	5 cut(s)	648, 960, 999, 1011, 1330
DpnII	GATC	5 cut(s)	646, 958, 997, 1009, 1328
DraIII	CACNNNGTG	1 cut(s)	1217
Eam1104I	CTCTTC	3 cut(s)	15, 95, 230
EarI	CTCTTC	3 cut(s)	15, 95, 230
Eco130I	CCWWGG	4 cut(s)	224, 321, 735, 1296
Eco147I	AGGCCT	1 cut(s)	106
Eco24I	GRGCYC	1 cut(s)	1262
Eco47I	GGWCC	1 cut(s)	221
Eco57I	CTGAAG	1 cut(s)	975
Eco88I	CYCGRG	1 cut(s)	1202
EcoT14I	CCWWGG	4 cut(s)	224, 321, 735, 1296
EcoT38I	GRGCYC	1 cut(s)	1262
ErhI	CCWWGG	4 cut(s)	224, 321, 735, 1296
FaeI	CATG	5 cut(s)	515, 610, 664, 739, 898
FalI	AAGNNNNNCTT	2 cut(s)	1014, 1046
FatI	CATG	5 cut(s)	511, 606, 660, 735, 894
FauI	CCCGC	1 cut(s)	773
Fnu4HI	GCNGC	3 cut(s)	791, 794, 1293
FokI	GGATG	4 cut(s)	266, 314, 773, 1208
FriOI	GRGCYC	1 cut(s)	1262
FseI	GGCCGGCC	1 cut(s)	131
Fsp4HI	GCNGC	3 cut(s)	791, 794, 1293
FspBI	CTAG	5 cut(s)	494, 576, 989, 1035, 1320
GlaI	GCGC	1 cut(s)	215
GluI	GCNGC	3 cut(s)	791, 794, 1293
GsuI	CTGGAG	2 cut(s)	89, 297
HaeII	RGCGCY	1 cut(s)	217
HaeIII	GGCC	5 cut(s)	106, 127, 131, 152, 320
HapII	CCGG	4 cut(s)	50, 128, 146, 164
HgaI	GACGC	2 cut(s)	416, 519
HhaI	GCGC	1 cut(s)	216
Hin1II	CATG	5 cut(s)	515, 610, 664, 739, 898
Hin6I	GCGC	1 cut(s)	214
HinP1I	GCGC	1 cut(s)	214
HincII	GTYRAC	1 cut(s)	307
HindII	GTYRAC	1 cut(s)	307
HindIII	AAGCTT	1 cut(s)	1336
HinfI	GANTC	9 cut(s)	59, 610, 656, 881, 942, 1109, 1168, 1189, 1343
HpaII	CCGG	4 cut(s)	50, 128, 146, 164
HphI	GGTGA	2 cut(s)	340, 369
Hpy166II	GTNNAC	3 cut(s)	307, 629, 731
Hpy188I	TCNGA	8 cut(s)	120, 247, 651, 775, 808, 997, 1185, 1348
Hpy8I	GTNNAC	3 cut(s)	307, 629, 731
HpyAV	CCTTC	2 cut(s)	894, 1224
HpyCH4III	ACNGT	3 cut(s)	311, 440, 967
HpyCH4IV	ACGT	2 cut(s)	631, 810
HpyCH4V	TGCA	6 cut(s)	265, 719, 971, 1004, 1292, 1370
HpyF10VI	GCNNNNNNNGC	4 cut(s)	137, 368, 790, 1298
HpyF3I	CTNAG	7 cut(s)	117, 473, 560, 774, 1077, 1101, 1347
HpySE526I	ACGT	2 cut(s)	631, 810
Hsp92II	CATG	5 cut(s)	515, 610, 664, 739, 898
HspAI	GCGC	1 cut(s)	214
Kpn2I	TCCGGA	1 cut(s)	145
KroI	GCCGGC	1 cut(s)	127
KroNI	GCCGGC	1 cut(s)	129
Kzo9I	GATC	5 cut(s)	646, 958, 997, 1009, 1328
LmnI	GCTCC	2 cut(s)	165, 247
Lsp1109I	GCAGC	3 cut(s)	802, 805, 1304
LweI	GCATC	2 cut(s)	742, 1357
MaeI	CTAG	5 cut(s)	494, 576, 989, 1035, 1320
MaeII	ACGT	2 cut(s)	631, 810
MaeIII	GTNAC	5 cut(s)	239, 674, 977, 1151, 1217
MalI	GATC	5 cut(s)	648, 960, 999, 1011, 1330
MbiI	CCGCTC	2 cut(s)	160, 780
MboI	GATC	5 cut(s)	646, 958, 997, 1009, 1328
MboII	GAAGA	9 cut(s)	112, 247, 527, 593, 647, 890, 968, 1019, 1251
MflI	RGATCY	2 cut(s)	958, 1009
MhlI	GDGCHC	1 cut(s)	1262
MluCI	AATT	7 cut(s)	16, 22, 373, 697, 743, 821, 926
MlyI	GAGTC	4 cut(s)	53, 619, 650, 1118
MmeI	TCCRAC	1 cut(s)	558
MroI	TCCGGA	1 cut(s)	145
MroNI	GCCGGC	1 cut(s)	127
MroXI	GAANNNNTTC	1 cut(s)	1179
MspI	CCGG	4 cut(s)	50, 128, 146, 164
MspR9I	CCNGG	1 cut(s)	164
MwoI	GCNNNNNNNGC	4 cut(s)	137, 368, 790, 1298
NaeI	GCCGGC	1 cut(s)	129
NciI	CCSGG	1 cut(s)	164
NcoI	CCATGG	1 cut(s)	735
NdeII	GATC	5 cut(s)	646, 958, 997, 1009, 1328
NgoMIV	GCCGGC	1 cut(s)	127
NlaIII	CATG	5 cut(s)	515, 610, 664, 739, 898
NlaIV	GGNNCC	2 cut(s)	54, 1353
NmuCI	GTSAC	2 cut(s)	977, 1217
NspI	RCATGY	1 cut(s)	898
NspV	TTCGAA	3 cut(s)	26, 410, 434
PaeR7I	CTCGAG	1 cut(s)	1202
PceI	AGGCCT	1 cut(s)	106
PdiI	GCCGGC	1 cut(s)	129
PdmI	GAANNNNTTC	1 cut(s)	1179
PfeI	GAWTC	5 cut(s)	881, 942, 1168, 1189, 1343
PfoI	TCCNGGA	1 cut(s)	162
PkrI	GCNGC	3 cut(s)	792, 795, 1294
PleI	GAGTC	4 cut(s)	53, 618, 650, 1117
PpsI	GAGTC	4 cut(s)	53, 618, 650, 1117
PspN4I	GGNNCC	2 cut(s)	54, 1353
PspPI	GGNCC	2 cut(s)	130, 221
PstI	CTGCAG	2 cut(s)	1006, 1294
PsuI	RGATCY	2 cut(s)	958, 1009
RigI	GGCCGGCC	1 cut(s)	131
RsaI	GTAC	2 cut(s)	730, 1016
RsaNI	GTAC	2 cut(s)	729, 1015
SatI	GCNGC	3 cut(s)	791, 794, 1293
Sau3AI	GATC	5 cut(s)	646, 958, 997, 1009, 1328
Sau96I	GGNCC	2 cut(s)	130, 221
SchI	GAGTC	4 cut(s)	53, 619, 650, 1118
ScrFI	CCNGG	1 cut(s)	164
SduI	GDGCHC	1 cut(s)	1262
SfaNI	GCATC	2 cut(s)	742, 1357
SfcI	CTRYAG	2 cut(s)	1002, 1290
Sfr274I	CTCGAG	1 cut(s)	1202
SfuI	TTCGAA	3 cut(s)	26, 410, 434
SinI	GGWCC	1 cut(s)	221
SlaI	CTCGAG	1 cut(s)	1202
SmlI	CTYRAG	1 cut(s)	1202
SmoI	CTYRAG	1 cut(s)	1202
Sse9I	AATT	7 cut(s)	16, 22, 373, 697, 743, 821, 926
SseBI	AGGCCT	1 cut(s)	106
SsiI	CCGC	4 cut(s)	158, 326, 780, 865
SspMI	CTAG	5 cut(s)	494, 576, 989, 1035, 1320
StuI	AGGCCT	1 cut(s)	106
StyD4I	CCNGG	1 cut(s)	162
StyI	CCWWGG	4 cut(s)	224, 321, 735, 1296
TaaI	ACNGT	3 cut(s)	311, 440, 967
TaiI	ACGT	2 cut(s)	634, 813
TaqI	TCGA	7 cut(s)	26, 38, 112, 410, 434, 1107, 1203
TasI	AATT	7 cut(s)	16, 22, 373, 697, 743, 821, 926
TatI	WGTACW	1 cut(s)	728
TfiI	GAWTC	5 cut(s)	881, 942, 1168, 1189, 1343
TscAI	CASTG	5 cut(s)	553, 688, 911, 970, 1294
TseFI	GTSAC	2 cut(s)	977, 1217
TseI	GCWGC	3 cut(s)	790, 793, 1292
Tsp45I	GTSAC	2 cut(s)	977, 1217
TspDTI	ATGAA	6 cut(s)	168, 248, 528, 759, 777, 1181
TspGWI	ACGGA	1 cut(s)	79
TspRI	CASTG	5 cut(s)	553, 688, 911, 970, 1294
VpaK11BI	GGWCC	1 cut(s)	221
XapI	RAATTY	4 cut(s)	16, 373, 697, 743
XceI	RCATGY	1 cut(s)	898
XcmI	CCANNNNNNNNNTGG	2 cut(s)	215, 733
XhoI	CTCGAG	1 cut(s)	1202
XmnI	GAANNNNTTC	1 cut(s)	1179
XspI	CTAG	5 cut(s)	494, 576, 989, 1035, 1320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.