pycom02g11380

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
Physical Location & Seq
Reverse (-)
8051613 .. 8054290
2678 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g11380.1

Sequence Viewer

Length: 1401 bp
ATGTCATCTCTTCCGAATTCCAATTCCAAGCCTTTTTCGAGTTCAATGCCAGTTCCTGACTCCAAGCTGGAGAGGAGGAACGGCGCCTCCGTTGCGGAGAAGAGGCCAAATCGACCTCCGATTACACCGGCCCTTTACGCTACTCCGGAGGCCACACCCCTCCCGGATTCGCCTACTTCATTTACTCCCTCGCCTTACATCATCAATCACAAGCGCCGTGGTCCAAGGCTTATGAAGAGTTACTCGGAGCAGGATGTGTCATTGCACCAGAAAGCTGGAGATATGGAGAAGCTCAATGGGGATCTCAACGATGCTGAGGCCAAGGGGGTGAAGCTCAATGGGGATGTCAAAAAAGCAGAGGCAAAGGTGGCAAATTTGCCTGTGGATGAGTTGGATACTTTTACTTTCCCCAAGCCTGTTGAAGTGCATCATTCGAATGGAGTCCATCATTTCGAGAGCAGCAATGGGAAGCTTGGGACCAGTGATGGGCAACTTAGAGGCAGTAATGTGGAACTAGGTAGTAGTAGCGAGCGTGAAGATAGCTTCTATGTGCCCAACAAGAGAAGCGGTAATGTGGAACTGAGTAATGTTTCTGCTAGGGAAGATGAGTTGTTGAAGCAACCTGCCATGAGTCCAGGAAGAGATAGTGAAAGTGAGGATTTCTTTGATCCGAAAGACTCCATGAGCGTCGCAAGTTACAACACGGATGGAGAGGGAAGTGTTTGGGCTGAGCGTTCTGCACAGACCAGTACACCCATGGGGGAATTTTATGATGCTTGGGATGAACTTTCATCTGAGAGCGGGCATGGGCAACAGCTTTCTGTTTCTGACCTTGACGTTGAATTGCGTGAAATGAGATTGAACCTTGTAATGGAGATAGAGAAGCGCAAGCAAGCAGAAGAATCCTTGAATAACATGCAAAGGCAGTGGCAGAGGATTAGGGAACAATTATCTCTTGTAGGATTGACACTCCCTGAAGATCCTGCTGCTGCAAGAAGTCCTGAGCAACTAGGTTCTGATCGTGCAGAAGATCTGTGCCAACAAGTTTATCTTGCTAGGTTTGTATCAAATTCTATCGGGAGGGGATTGGTAAGGGCTGAGATGGAGTTGGAGATGGAAGCTCAGATCGAGTCAAAGAACTTTGAAATTGCTCGGTTGATGGACAAACTCCGTAACTATGAGGCAATGAATCAAGAAATGGTTCAGAGGAATCAGGACGTTCTCGAGATGGCACGGCGCGACAGGGAGAGAAGGGAAAGAAGACAAAGATGGGTATGGGGCTCGATTGCGACTGCCCTAACACTTGGTACTGCAGCCTTGACATACTCTTATATCCCGTCTAGCAGGGGATCGCCAACCTTCGATTCCGAGGTTCCTGAGAGTAGCGATGCAGGCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

467

Amino Acids

52.05

Weight (kDa)

5.1

Isoelectric Point (pI)

60.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 631
AccB1I GGYRCC 1 cut(s) 83
AccBSI CCGCTC 1 cut(s) 801
AccII CGCG 1 cut(s) 1239
AccIII TCCGGA 1 cut(s) 145
AciI CCGC 3 cut(s) 95, 567, 801
AclWI GGATC 4 cut(s) 309, 662, 974, 1357
AcsI RAATTY 4 cut(s) 16, 373, 764, 1069
AcuI CTGAAG 1 cut(s) 996
AcyI GRCGYC 1 cut(s) 84
AfaI GTAC 2 cut(s) 751, 1309
AfiI CCNNNNNNNGG 2 cut(s) 486, 871
AgsI TTSAA 7 cut(s) 45, 422, 616, 842, 862, 910, 1145
AjnI CCWGG 1 cut(s) 634
AjuI GAANNNNNNNTTGG 2 cut(s) 1348, 1380
AloI GAACNNNNNNTCC 2 cut(s) 71, 103
AluBI AGCT 8 cut(s) 67, 275, 292, 334, 472, 543, 817, 1121
AluI AGCT 8 cut(s) 67, 275, 292, 334, 472, 543, 817, 1121
AlwI GGATC 4 cut(s) 309, 662, 974, 1357
AlwNI CAGNNNCTG 1 cut(s) 56
Ama87I CYCGRG 1 cut(s) 1223
Aor13HI TCCGGA 1 cut(s) 145
AoxI GGCC 4 cut(s) 104, 129, 150, 318
ApeKI GCWGC 4 cut(s) 459, 986, 989, 1313
ApoI RAATTY 4 cut(s) 16, 373, 764, 1069
Asp700I GAANNNNTTC 1 cut(s) 1200
AspLEI GCGC 4 cut(s) 86, 216, 888, 1239
AspS9I GGNCC 3 cut(s) 130, 221, 477
AsuC2I CCSGG 1 cut(s) 164
AsuHPI GGTGA 1 cut(s) 340
AsuII TTCGAA 1 cut(s) 434
AvaI CYCGRG 1 cut(s) 1223
AvaII GGWCC 2 cut(s) 221, 477
BaeGI GKGCMC 1 cut(s) 555
BanI GGYRCC 1 cut(s) 83
BanII GRGCYC 1 cut(s) 1283
BbsI GAAGAC 1 cut(s) 1267
BbvCI CCTCAGC 1 cut(s) 315
BbvI GCAGC 4 cut(s) 471, 973, 976, 1325
BccI CCATC 8 cut(s) 453, 479, 701, 1096, 1108, 1153, 1222, 1263
BceAI ACGGC 3 cut(s) 97, 201, 1250
BcgI CGANNNNNNTGC 2 cut(s) 28, 62
BciT130I CCWGG 1 cut(s) 636
BciVI GTATCC 1 cut(s) 388
BcnI CCSGG 1 cut(s) 164
BfaI CTAG 5 cut(s) 515, 597, 1010, 1056, 1341
BfmI CTRYAG 1 cut(s) 1311
BfoI RGCGCY 2 cut(s) 87, 217
BfuAI ACCTGC 1 cut(s) 631
BfuI GTATCC 1 cut(s) 388
BglII AGATCT 1 cut(s) 1030
BisI GCNGC 4 cut(s) 460, 987, 990, 1314
BlpI GCTNAGC 1 cut(s) 729
BlsI GCNGC 4 cut(s) 461, 988, 991, 1315
Bme1390I CCNGG 2 cut(s) 164, 636
Bme18I GGWCC 2 cut(s) 221, 477
BmeT110I CYCGRG 1 cut(s) 1223
BmgT120I GGNCC 3 cut(s) 130, 221, 477
BmiI GGNNCC 3 cut(s) 85, 478, 1374
BmrFI CCNGG 2 cut(s) 164, 636
BmsI GCATC 4 cut(s) 301, 436, 763, 1378
BpiI GAAGAC 1 cut(s) 1267
BpmI CTGGAG 2 cut(s) 89, 297
Bpu10I CCTNAGC 2 cut(s) 315, 1002
Bpu1102I GCTNAGC 1 cut(s) 729
Bpu14I TTCGAA 1 cut(s) 434
BpuMI CCSGG 1 cut(s) 164
BsaHI GRCGYC 1 cut(s) 84
BsaJI CCNNGG 5 cut(s) 217, 224, 321, 756, 1368
BsaWI WCCGGW 1 cut(s) 145
BsaXI ACNNNNNCTCC 2 cut(s) 71, 101
Bsc4I CCNNNNNNNGG 2 cut(s) 486, 871
Bse118I RCCGGY 1 cut(s) 127
Bse1I ACTGG 3 cut(s) 50, 480, 747
Bse3DI GCAATG 3 cut(s) 260, 469, 1191
BseAI TCCGGA 1 cut(s) 145
BseBI CCWGG 1 cut(s) 636
BseDI CCNNGG 5 cut(s) 217, 224, 321, 756, 1368
BseGI GGATG 5 cut(s) 259, 349, 391, 712, 787
BseLI CCNNNNNNNGG 2 cut(s) 486, 871
BseMI GCAATG 3 cut(s) 260, 469, 1191
BseMII CTCAG 8 cut(s) 306, 572, 720, 786, 993, 1089, 1136, 1368
BseNI ACTGG 3 cut(s) 50, 480, 747
BseRI GAGGAG 1 cut(s) 88
BseSI GKGCMC 1 cut(s) 555
BseXI GCAGC 4 cut(s) 471, 973, 976, 1325
BsgI GTGCAG 2 cut(s) 723, 1044
Bsh1236I CGCG 1 cut(s) 1239
BshFI GGCC 4 cut(s) 106, 131, 152, 320
BshNI GGYRCC 1 cut(s) 83
BsiHKCI CYCGRG 1 cut(s) 1223
BsiSI CCGG 3 cut(s) 128, 146, 164
BslFI GGGAC 1 cut(s) 490
BslI CCNNNNNNNGG 2 cut(s) 486, 871
BsmFI GGGAC 1 cut(s) 490
BsnI GGCC 4 cut(s) 106, 131, 152, 320
BsoBI CYCGRG 1 cut(s) 1223
Bsp119I TTCGAA 1 cut(s) 434
Bsp1286I GDGCHC 2 cut(s) 555, 1283
Bsp13I TCCGGA 1 cut(s) 145
Bsp143I GATC 7 cut(s) 301, 667, 979, 1018, 1030, 1125, 1349
Bsp1720I GCTNAGC 1 cut(s) 729
Bsp19I CCATGG 1 cut(s) 756
BspACI CCGC 3 cut(s) 95, 567, 801
BspANI GGCC 4 cut(s) 106, 131, 152, 320
BspCNI CTCAG 8 cut(s) 307, 573, 721, 787, 994, 1090, 1135, 1369
BspEI TCCGGA 1 cut(s) 145
BspFNI CGCG 1 cut(s) 1239
BspLI GGNNCC 3 cut(s) 85, 478, 1374
BspMAI CTGCAG 1 cut(s) 1315
BspMI ACCTGC 1 cut(s) 631
BspPI GGATC 4 cut(s) 309, 662, 974, 1357
BspT104I TTCGAA 1 cut(s) 434
BspT107I GGYRCC 1 cut(s) 83
BsrBI CCGCTC 1 cut(s) 801
BsrDI GCAATG 3 cut(s) 260, 469, 1191
BsrFI RCCGGY 1 cut(s) 127
BsrI ACTGG 3 cut(s) 50, 480, 747
BssAI RCCGGY 1 cut(s) 127
BssECI CCNNGG 5 cut(s) 217, 224, 321, 756, 1368
BssMI GATC 7 cut(s) 301, 667, 979, 1018, 1030, 1125, 1349
BssNI GRCGYC 1 cut(s) 84
BssT1I CCWWGG 3 cut(s) 224, 321, 756
Bst2UI CCWGG 1 cut(s) 636
Bst6I CTCTTC 4 cut(s) 15, 95, 230, 634
BstACI GRCGYC 1 cut(s) 84
BstBI TTCGAA 1 cut(s) 434
BstC8I GCNNGC 5 cut(s) 530, 803, 890, 894, 1393
BstDEI CTNAG 9 cut(s) 315, 494, 581, 729, 795, 1002, 1098, 1122, 1377
BstDSI CCRYGG 2 cut(s) 217, 756
BstF5I GGATG 5 cut(s) 259, 349, 391, 712, 787
BstFNI CGCG 1 cut(s) 1239
BstH2I RGCGCY 2 cut(s) 87, 217
BstHHI GCGC 4 cut(s) 86, 216, 888, 1239
BstKTI GATC 7 cut(s) 304, 670, 982, 1021, 1033, 1128, 1352
BstMBI GATC 7 cut(s) 301, 667, 979, 1018, 1030, 1125, 1349
BstMWI GCNNNNNNNGC 4 cut(s) 92, 137, 368, 1392
BstNI CCWGG 1 cut(s) 636
BstNSI RCATGY 1 cut(s) 919
BstSCI CCNGG 2 cut(s) 162, 634
BstSFI CTRYAG 1 cut(s) 1311
BstSLI GKGCMC 1 cut(s) 555
BstUI CGCG 1 cut(s) 1239
BstV1I GCAGC 4 cut(s) 471, 973, 976, 1325
BstV2I GAAGAC 1 cut(s) 1267
BstX2I RGATCY 3 cut(s) 301, 979, 1030
BstXI CCANNNNNNTGG 1 cut(s) 275
BstYI RGATCY 3 cut(s) 301, 979, 1030
BsuI GTATCC 1 cut(s) 388
BsuRI GGCC 4 cut(s) 106, 131, 152, 320
BtgI CCRYGG 2 cut(s) 217, 756
BtsCI GGATG 5 cut(s) 259, 349, 391, 712, 787
BtsI GCAGTG 1 cut(s) 932
BtsIMutI CAGTG 2 cut(s) 487, 932
BveI ACCTGC 1 cut(s) 631
Cac8I GCNNGC 5 cut(s) 530, 803, 890, 894, 1393
CaiI CAGNNNCTG 1 cut(s) 56
CfoI GCGC 4 cut(s) 86, 216, 888, 1239
Cfr10I RCCGGY 1 cut(s) 127
Cfr13I GGNCC 3 cut(s) 130, 221, 477
CseI GACGC 1 cut(s) 676
Csp6I GTAC 2 cut(s) 750, 1308
CspCI CAANNNNNGTGG 4 cut(s) 199, 234, 908, 943
CviAII CATG 5 cut(s) 628, 682, 757, 806, 916
CviQI GTAC 2 cut(s) 750, 1308
DdeI CTNAG 9 cut(s) 315, 494, 581, 729, 795, 1002, 1098, 1122, 1377
DinI GGCGCC 1 cut(s) 85
DpnI GATC 7 cut(s) 303, 669, 981, 1020, 1032, 1127, 1351
DpnII GATC 7 cut(s) 301, 667, 979, 1018, 1030, 1125, 1349
Eam1104I CTCTTC 4 cut(s) 15, 95, 230, 634
EarI CTCTTC 4 cut(s) 15, 95, 230, 634
Eco130I CCWWGG 3 cut(s) 224, 321, 756
Eco24I GRGCYC 1 cut(s) 1283
Eco47I GGWCC 2 cut(s) 221, 477
Eco57I CTGAAG 1 cut(s) 996
Eco88I CYCGRG 1 cut(s) 1223
EcoRI GAATTC 1 cut(s) 16
EcoRII CCWGG 1 cut(s) 634
EcoT14I CCWWGG 3 cut(s) 224, 321, 756
EcoT38I GRGCYC 1 cut(s) 1283
EgeI GGCGCC 1 cut(s) 85
EheI GGCGCC 1 cut(s) 85
ErhI CCWWGG 3 cut(s) 224, 321, 756
FaeI CATG 5 cut(s) 631, 685, 760, 809, 919
FalI AAGNNNNNCTT 2 cut(s) 1035, 1067
FaqI GGGAC 1 cut(s) 490
FatI CATG 5 cut(s) 627, 681, 756, 805, 915
FauI CCCGC 1 cut(s) 794
Fnu4HI GCNGC 4 cut(s) 460, 987, 990, 1314
FokI GGATG 5 cut(s) 266, 356, 398, 719, 794
FriOI GRGCYC 1 cut(s) 1283
Fsp4HI GCNGC 4 cut(s) 460, 987, 990, 1314
FspBI CTAG 5 cut(s) 515, 597, 1010, 1056, 1341
GlaI GCGC 4 cut(s) 85, 215, 887, 1238
GluI GCNGC 4 cut(s) 460, 987, 990, 1314
GsuI CTGGAG 2 cut(s) 89, 297
HaeII RGCGCY 2 cut(s) 87, 217
HaeIII GGCC 4 cut(s) 106, 131, 152, 320
HapII CCGG 3 cut(s) 128, 146, 164
HgaI GACGC 1 cut(s) 676
HhaI GCGC 4 cut(s) 86, 216, 888, 1239
Hin1I GRCGYC 1 cut(s) 84
Hin1II CATG 5 cut(s) 631, 685, 760, 809, 919
Hin6I GCGC 4 cut(s) 84, 214, 886, 1237
HinP1I GCGC 4 cut(s) 84, 214, 886, 1237
HindIII AAGCTT 1 cut(s) 470
HpaII CCGG 3 cut(s) 128, 146, 164
HphI GGTGA 1 cut(s) 340
Hpy166II GTNNAC 1 cut(s) 752
Hpy8I GTNNAC 1 cut(s) 752
Hpy99I CGWCG 1 cut(s) 692
HpyAV CCTTC 2 cut(s) 1245, 1369
HpyCH4IV ACGT 2 cut(s) 837, 1218
HpyCH4V TGCA 8 cut(s) 265, 427, 740, 919, 992, 1025, 1313, 1391
HpyF10VI GCNNNNNNNGC 4 cut(s) 92, 137, 368, 1392
HpyF3I CTNAG 9 cut(s) 315, 494, 581, 729, 795, 1002, 1098, 1122, 1377
HpySE526I ACGT 2 cut(s) 837, 1218
Hsp92I GRCGYC 1 cut(s) 84
Hsp92II CATG 5 cut(s) 631, 685, 760, 809, 919
HspAI GCGC 4 cut(s) 84, 214, 886, 1237
KasI GGCGCC 1 cut(s) 83
Kpn2I TCCGGA 1 cut(s) 145
Kzo9I GATC 7 cut(s) 301, 667, 979, 1018, 1030, 1125, 1349
LmnI GCTCC 1 cut(s) 247
Lsp1109I GCAGC 4 cut(s) 471, 973, 976, 1325
LweI GCATC 4 cut(s) 301, 436, 763, 1378
MaeI CTAG 5 cut(s) 515, 597, 1010, 1056, 1341
MaeII ACGT 2 cut(s) 837, 1218
MaeIII GTNAC 3 cut(s) 239, 695, 1172
MalI GATC 7 cut(s) 303, 669, 981, 1020, 1032, 1127, 1351
MbiI CCGCTC 1 cut(s) 801
MboI GATC 7 cut(s) 301, 667, 979, 1018, 1030, 1125, 1349
MboII GAAGA 9 cut(s) 112, 247, 548, 614, 651, 911, 989, 1040, 1272
MflI RGATCY 3 cut(s) 301, 979, 1030
MhlI GDGCHC 2 cut(s) 555, 1283
MluCI AATT 8 cut(s) 16, 22, 373, 764, 842, 947, 1069, 1146
Mly113I GGCGCC 1 cut(s) 84
MlyI GAGTC 5 cut(s) 53, 450, 640, 671, 1139
MmeI TCCRAC 2 cut(s) 372, 1089
MroI TCCGGA 1 cut(s) 145
MroXI GAANNNNTTC 1 cut(s) 1200
MslI CAYNNNNRTG 1 cut(s) 435
MspI CCGG 3 cut(s) 128, 146, 164
MspR9I CCNGG 2 cut(s) 164, 636
MvaI CCWGG 1 cut(s) 636
MvnI CGCG 1 cut(s) 1239
MwoI GCNNNNNNNGC 4 cut(s) 92, 137, 368, 1392
NarI GGCGCC 1 cut(s) 84
NciI CCSGG 1 cut(s) 164
NcoI CCATGG 1 cut(s) 756
NdeII GATC 7 cut(s) 301, 667, 979, 1018, 1030, 1125, 1349
NlaIII CATG 5 cut(s) 631, 685, 760, 809, 919
NlaIV GGNNCC 3 cut(s) 85, 478, 1374
NspI RCATGY 1 cut(s) 919
NspV TTCGAA 1 cut(s) 434
PaeR7I CTCGAG 1 cut(s) 1223
PcsI WCGNNNNNNNCGW 1 cut(s) 87
PdmI GAANNNNTTC 1 cut(s) 1200
PfeI GAWTC 5 cut(s) 167, 902, 1189, 1210, 1364
PfoI TCCNGGA 2 cut(s) 162, 634
PkrI GCNGC 4 cut(s) 461, 988, 991, 1315
PleI GAGTC 5 cut(s) 53, 449, 639, 671, 1138
PluTI GGCGCC 1 cut(s) 87
PpsI GAGTC 5 cut(s) 53, 449, 639, 671, 1138
Psp6I CCWGG 1 cut(s) 634
PspGI CCWGG 1 cut(s) 634
PspN4I GGNNCC 3 cut(s) 85, 478, 1374
PspPI GGNCC 3 cut(s) 130, 221, 477
PstI CTGCAG 1 cut(s) 1315
PstNI CAGNNNCTG 1 cut(s) 56
PsuI RGATCY 3 cut(s) 301, 979, 1030
RsaI GTAC 2 cut(s) 751, 1309
RsaNI GTAC 2 cut(s) 750, 1308
RseI CAYNNNNRTG 1 cut(s) 435
SatI GCNGC 4 cut(s) 460, 987, 990, 1314
Sau3AI GATC 7 cut(s) 301, 667, 979, 1018, 1030, 1125, 1349
Sau96I GGNCC 3 cut(s) 130, 221, 477
SchI GAGTC 5 cut(s) 53, 450, 640, 671, 1139
ScrFI CCNGG 2 cut(s) 164, 636
SduI GDGCHC 2 cut(s) 555, 1283
SfaNI GCATC 4 cut(s) 301, 436, 763, 1378
SfcI CTRYAG 1 cut(s) 1311
SfoI GGCGCC 1 cut(s) 85
Sfr274I CTCGAG 1 cut(s) 1223
SfuI TTCGAA 1 cut(s) 434
SinI GGWCC 2 cut(s) 221, 477
SlaI CTCGAG 1 cut(s) 1223
SmiMI CAYNNNNRTG 1 cut(s) 435
SmlI CTYRAG 1 cut(s) 1223
SmoI CTYRAG 1 cut(s) 1223
Sse9I AATT 8 cut(s) 16, 22, 373, 764, 842, 947, 1069, 1146
SsiI CCGC 3 cut(s) 95, 567, 801
SspDI GGCGCC 1 cut(s) 83
SspMI CTAG 5 cut(s) 515, 597, 1010, 1056, 1341
StyD4I CCNGG 2 cut(s) 162, 634
StyI CCWWGG 3 cut(s) 224, 321, 756
TaiI ACGT 2 cut(s) 840, 1221
TaqI TCGA 8 cut(s) 38, 112, 434, 453, 1128, 1224, 1283, 1362
TasI AATT 8 cut(s) 16, 22, 373, 764, 842, 947, 1069, 1146
TatI WGTACW 1 cut(s) 749
TfiI GAWTC 5 cut(s) 167, 902, 1189, 1210, 1364
TscAI CASTG 2 cut(s) 487, 932
TseI GCWGC 4 cut(s) 459, 986, 989, 1313
TspDTI ATGAA 5 cut(s) 168, 248, 780, 798, 1202
TspGWI ACGGA 3 cut(s) 79, 719, 1160
TspRI CASTG 2 cut(s) 487, 932
VpaK11BI GGWCC 2 cut(s) 221, 477
XapI RAATTY 4 cut(s) 16, 373, 764, 1069
XceI RCATGY 1 cut(s) 919
XcmI CCANNNNNNNNNTGG 1 cut(s) 754
XhoI CTCGAG 1 cut(s) 1223
XmnI GAANNNNTTC 1 cut(s) 1200
XspI CTAG 5 cut(s) 515, 597, 1010, 1056, 1341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.