Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010423

Physical Location & Seq

Genomic Coordinates Reverse (-)

26544541 .. 26547000

Gene Structure 2460 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G66480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1335 bp

ATGCCTACATTTTCTGCTGCCGCTTTGGGTAGATCACTAAATTCAGGGACGTCCTTATCTAGTAAATTTCCAAGCACACTGCAGTCAAAGCCGTCTATTTTGAATGATGAAAGTAAGCAACCTAAAGAAAAGACATTCACTCGTCCTCAGATGTCACCTTCTCTATATGCCACTACTAAAGAAATCCCTCATCCCAATTCGCCTTCTTCCTACCCTCCATCTCCCTATATCATCAATCACAAAGCTCGTGGGCCTGTTCTTTTCAATAGGGACTCTGAGGTGGATGGGCCTTCTCACCCGATAACCTCTGGTGAGGAAAAGATTAGTGGTAATGTAGATGTGGAGGCTACTGCCTCCTTGAGCAAGTCCACATCCCTATCATTTCCTATCACCGAGGCTATTGCGGTGGATCACACCAATGGTGTTCACACCCAAGGCATCCATGAACGTCCTGTTTGGGATTGCAGTCCCCCTCTTGGGACATTTTTGAACGAGAAGTCGGGAAGAGATATCAGCAATGGTGGGATTGGAAGTAATAATGCTACCAGTAATTTAGAATGGCAAAGTTACTTATTGGAGCCGGTAAGAATAAAAGCAGACAAGGAGCTTGAGCCTGAAAATTTCTATAACCCAGGTGAATTAGTAAGCTTCACAAGTAACACAGAGGTAGAAGATTTCGAGAGAGCTGAAAGCTCACACAGTCTTGCTACACATGTTGGAGAGTTTTATGATGCTTGCGATGAACTATCAACTGACAGTGGAATGCAGAGTTCAGCTAACAACATTGAATCTGAGGTAAGGGAGATGAGATTGGGTTTACTAATGGAAATCGAAAGGAGGAGGCAGGCAGAGGCGACTCTAGAGCAAATGCAAGTTCATTGGCGGAGGCTCCGTGACCAGTTGGCCGATGTGGGTATGTTCCTTCCTCTTGATCCCACCAGAAGCCAATACAGCATGAACCTAGCTGATGAGCTACGTTGTCAACTTGAGGTCACCAGGTTTGTCTCCGACACACTAGGCAGTGACTTGGCCAAGACAGAGGTAGAGATGGAGATGGAAGCTGAGCTCGAAGCTAAGAACTTTGAAATCACCCGGTTGTCTGACCGTCTTCATTATTACGAGACTGTGAACCAGGAAATGTCCCAGCGCAACCAAGAGGCCATAGAGGTGGCAAGGCGAGACGGGCAAAAGAGAAAGAGGAGGCAGAGGTGGATTTGGGGATCAATAGCTGCAACCATCACACTCGGGAGTGGAGTCTTGGCCTGGTCGTACCTTCCTCCCGGAATGTTATCATCAGATGAAGCTCAACCTCAGCTGTCTCCAAAAGATTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

444

Amino Acids

49.56

Weight (kDa)

5.03

Isoelectric Point (pI)

59.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010423)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50910 AT5G66480
fragaria_vesca	FvH4_1g12900 FvH4_1g12900
malus_domestica	MD02G1143900.v1.1 MD15G1257200.v1.1
prunus_persica	Prupe.7G157800_v2.0.a1
pyrus_communis	pycom02g11380 pycom15g22510
rosa_chinensis	RchiOBHm_Chr2g0100981
rosa_laevigata	RLG00000017033
rosa_multiflora	Rmu_co8514483.1_g000001 Rmu_sc0001862.1_g000011
rosa_roxburghii	Rroxscaffold_2G00141680
rosa_rugosa	Rorug02G0094700 Rorug02G0094800
rosa_samantha	Rh2AG141900 Rh2BG147100 Rh2CG148400 Rh2DG147600
rosa_wichuraiana	Rw2G011140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	53
AciI	CCGC	3 cut(s)	21, 404, 883
AclWI	GGATC	3 cut(s)	417, 926, 1228
AcoI	YGGCCR	2 cut(s)	903, 1029
AcsI	RAATTY	3 cut(s)	40, 65, 619
AcyI	GRCGYC	1 cut(s)	50
AfaI	GTAC	1 cut(s)	1271
AfiI	CCNNNNNNNGG	2 cut(s)	476, 477
AflIII	ACRYGT	1 cut(s)	712
AgsI	TTSAA	5 cut(s)	103, 265, 490, 788, 1085
AjnI	CCWGG	4 cut(s)	631, 995, 1131, 1262
Alw21I	GWGCWC	1 cut(s)	1068
Alw26I	GTCTC	4 cut(s)	1009, 1115, 1173, 1323
AlwI	GGATC	3 cut(s)	417, 926, 1228
Ama87I	CYCGRG	1 cut(s)	1244
AoxI	GGCC	6 cut(s)	251, 287, 903, 1029, 1158, 1260
ApeKI	GCWGC	2 cut(s)	17, 1229
ApoI	RAATTY	3 cut(s)	40, 65, 619
AspLEI	GCGC	1 cut(s)	1149
AspS9I	GGNCC	2 cut(s)	251, 287
AsuC2I	CCSGG	2 cut(s)	1093, 1281
AsuHPI	GGTGA	7 cut(s)	147, 287, 323, 382, 647, 985, 1081
AvaI	CYCGRG	1 cut(s)	1244
BalI	TGGCCA	1 cut(s)	1031
BanII	GRGCYC	1 cut(s)	1068
BauI	CACGAG	1 cut(s)	246
BbsI	GAAGAC	1 cut(s)	1100
Bbv12I	GWGCWC	1 cut(s)	1068
BbvCI	CCTCAGC	1 cut(s)	1311
BbvI	GCAGC	2 cut(s)	4, 1216
BccI	CCATC	5 cut(s)	226, 278, 1042, 1048, 1244
BceAI	ACGGC	1 cut(s)	76
BcgI	CGANNNNNNTGC	2 cut(s)	383, 417
BciT130I	CCWGG	4 cut(s)	633, 997, 1133, 1264
BcnI	CCSGG	2 cut(s)	1093, 1281
BcoDI	GTCTC	4 cut(s)	1009, 1115, 1173, 1323
BfaI	CTAG	4 cut(s)	60, 860, 962, 1016
BfmI	CTRYAG	1 cut(s)	80
BisI	GCNGC	3 cut(s)	18, 21, 1230
BlpI	GCTNAGC	1 cut(s)	1062
BlsI	GCNGC	3 cut(s)	19, 22, 1231
Bme1390I	CCNGG	6 cut(s)	633, 997, 1093, 1133, 1264, 1281
BmeT110I	CYCGRG	1 cut(s)	1244
BmgT120I	GGNCC	2 cut(s)	251, 287
BmiI	GGNNCC	2 cut(s)	579, 890
BmrFI	CCNGG	6 cut(s)	633, 997, 1093, 1133, 1264, 1281
BmsI	GCATC	2 cut(s)	447, 721
BpiI	GAAGAC	1 cut(s)	1100
Bpu10I	CCTNAGC	1 cut(s)	1311
Bpu1102I	GCTNAGC	1 cut(s)	1062
BpuEI	CTTGAG	3 cut(s)	379, 629, 1007
BpuMI	CCSGG	2 cut(s)	1093, 1281
BsaHI	GRCGYC	1 cut(s)	50
BsaJI	CCNNGG	3 cut(s)	393, 433, 631
BsaXI	ACNNNNNCTCC	2 cut(s)	877, 907
Bsc4I	CCNNNNNNNGG	2 cut(s)	476, 477
Bse118I	RCCGGY	1 cut(s)	580
Bse1I	ACTGG	2 cut(s)	546, 898
Bse3DI	GCAATG	1 cut(s)	523
BseBI	CCWGG	4 cut(s)	633, 997, 1133, 1264
BseDI	CCNNGG	3 cut(s)	393, 433, 631
BseGI	GGATG	4 cut(s)	190, 289, 371, 438
BseLI	CCNNNNNNNGG	2 cut(s)	476, 477
BseMI	GCAATG	1 cut(s)	523
BseMII	CTCAG	5 cut(s)	161, 267, 783, 1053, 1325
BseNI	ACTGG	2 cut(s)	546, 898
BseRI	GAGGAG	2 cut(s)	853, 1213
BseXI	GCAGC	2 cut(s)	4, 1216
BseYI	CCCAGC	1 cut(s)	1143
BshFI	GGCC	6 cut(s)	253, 289, 905, 1031, 1160, 1262
BsiHKAI	GWGCWC	1 cut(s)	1068
BsiHKCI	CYCGRG	1 cut(s)	1244
BsiSI	CCGG	3 cut(s)	581, 1093, 1281
BslFI	GGGAC	5 cut(s)	61, 284, 453, 493, 1126
BslI	CCNNNNNNNGG	2 cut(s)	476, 477
BsmAI	GTCTC	4 cut(s)	1009, 1115, 1173, 1323
BsmBI	CGTCTC	1 cut(s)	1173
BsmFI	GGGAC	5 cut(s)	61, 284, 453, 493, 1126
BsmI	GAATGC	1 cut(s)	768
BsnI	GGCC	6 cut(s)	253, 289, 905, 1031, 1160, 1262
BsoBI	CYCGRG	1 cut(s)	1244
Bsp1286I	GDGCHC	1 cut(s)	1068
Bsp143I	GATC	4 cut(s)	32, 409, 931, 1220
Bsp1720I	GCTNAGC	1 cut(s)	1062
BspACI	CCGC	3 cut(s)	21, 404, 883
BspANI	GGCC	6 cut(s)	253, 289, 905, 1031, 1160, 1262
BspCNI	CTCAG	5 cut(s)	160, 268, 784, 1054, 1324
BspLI	GGNNCC	2 cut(s)	579, 890
BspMAI	CTGCAG	1 cut(s)	84
BspPI	GGATC	3 cut(s)	417, 926, 1228
BsrDI	GCAATG	1 cut(s)	523
BsrFI	RCCGGY	1 cut(s)	580
BsrI	ACTGG	2 cut(s)	546, 898
BssAI	RCCGGY	1 cut(s)	580
BssECI	CCNNGG	3 cut(s)	393, 433, 631
BssMI	GATC	4 cut(s)	32, 409, 931, 1220
BssNI	GRCGYC	1 cut(s)	50
BssSI	CACGAG	1 cut(s)	246
BssT1I	CCWWGG	1 cut(s)	433
Bst2BI	CACGAG	1 cut(s)	246
Bst2UI	CCWGG	4 cut(s)	633, 997, 1133, 1264
Bst4CI	ACNGT	4 cut(s)	701, 758, 1106, 1126
Bst6I	CTCTTC	1 cut(s)	499
BstACI	GRCGYC	1 cut(s)	50
BstC8I	GCNNGC	2 cut(s)	736, 846
BstDEI	CTNAG	6 cut(s)	147, 276, 792, 1062, 1074, 1311
BstEII	GGTNACC	1 cut(s)	991
BstF5I	GGATG	4 cut(s)	190, 289, 371, 438
BstHHI	GCGC	1 cut(s)	1149
BstKTI	GATC	4 cut(s)	35, 412, 934, 1223
BstMAI	GTCTC	4 cut(s)	1009, 1115, 1173, 1323
BstMBI	GATC	4 cut(s)	32, 409, 931, 1220
BstMWI	GCNNNNNNNGC	3 cut(s)	88, 951, 1183
BstNI	CCWGG	4 cut(s)	633, 997, 1133, 1264
BstNSI	RCATGY	1 cut(s)	716
BstPI	GGTNACC	1 cut(s)	991
BstSCI	CCNGG	6 cut(s)	631, 995, 1091, 1131, 1262, 1279
BstSFI	CTRYAG	1 cut(s)	80
BstV1I	GCAGC	2 cut(s)	4, 1216
BstV2I	GAAGAC	1 cut(s)	1100
BstXI	CCANNNNNNTGG	1 cut(s)	1168
BsuRI	GGCC	6 cut(s)	253, 289, 905, 1031, 1160, 1262
BtgZI	GCGATG	1 cut(s)	753
BtsCI	GGATG	4 cut(s)	190, 289, 371, 438
BtsI	GCAGTG	2 cut(s)	77, 1027
BtsIMutI	CAGTG	3 cut(s)	77, 763, 1027
Cac8I	GCNNGC	2 cut(s)	736, 846
CfoI	GCGC	1 cut(s)	1149
Cfr10I	RCCGGY	1 cut(s)	580
Cfr13I	GGNCC	2 cut(s)	251, 287
CsiI	ACCWGGT	1 cut(s)	995
Csp6I	GTAC	1 cut(s)	1270
CspCI	CAANNNNNGTGG	2 cut(s)	229, 264
CviAII	CATG	3 cut(s)	443, 713, 955
CviQI	GTAC	1 cut(s)	1270
DdeI	CTNAG	6 cut(s)	147, 276, 792, 1062, 1074, 1311
DpnI	GATC	4 cut(s)	34, 411, 933, 1222
DpnII	GATC	4 cut(s)	32, 409, 931, 1220
EaeI	YGGCCR	2 cut(s)	903, 1029
Eam1104I	CTCTTC	1 cut(s)	499
EarI	CTCTTC	1 cut(s)	499
EciI	GGCGGA	1 cut(s)	898
Ecl136II	GAGCTC	1 cut(s)	1066
Eco130I	CCWWGG	1 cut(s)	433
Eco24I	GRGCYC	1 cut(s)	1068
Eco32I	GATATC	1 cut(s)	511
Eco53kI	GAGCTC	1 cut(s)	1066
Eco88I	CYCGRG	1 cut(s)	1244
Eco91I	GGTNACC	1 cut(s)	991
EcoICRI	GAGCTC	1 cut(s)	1066
EcoO65I	GGTNACC	1 cut(s)	991
EcoRII	CCWGG	4 cut(s)	631, 995, 1131, 1262
EcoRV	GATATC	1 cut(s)	511
EcoT14I	CCWWGG	1 cut(s)	433
EcoT38I	GRGCYC	1 cut(s)	1068
ErhI	CCWWGG	1 cut(s)	433
Esp3I	CGTCTC	1 cut(s)	1173
FaeI	CATG	3 cut(s)	446, 716, 958
FaqI	GGGAC	5 cut(s)	61, 284, 453, 493, 1126
FatI	CATG	3 cut(s)	442, 712, 954
Fnu4HI	GCNGC	3 cut(s)	18, 21, 1230
FokI	GGATG	4 cut(s)	177, 296, 358, 425
FriOI	GRGCYC	1 cut(s)	1068
Fsp4HI	GCNGC	3 cut(s)	18, 21, 1230
FspBI	CTAG	4 cut(s)	60, 860, 962, 1016
GlaI	GCGC	1 cut(s)	1148
GluI	GCNGC	3 cut(s)	18, 21, 1230
GsaI	CCCAGC	1 cut(s)	1147
HaeIII	GGCC	6 cut(s)	253, 289, 905, 1031, 1160, 1262
HapII	CCGG	3 cut(s)	581, 1093, 1281
HhaI	GCGC	1 cut(s)	1149
Hin1I	GRCGYC	1 cut(s)	50
Hin1II	CATG	3 cut(s)	446, 716, 958
Hin6I	GCGC	1 cut(s)	1147
HinP1I	GCGC	1 cut(s)	1147
HincII	GTYRAC	1 cut(s)	983
HindII	GTYRAC	1 cut(s)	983
HindIII	AAGCTT	1 cut(s)	646
HinfI	GANTC	5 cut(s)	272, 788, 856, 1254, 1328
HpaII	CCGG	3 cut(s)	581, 1093, 1281
HphI	GGTGA	7 cut(s)	147, 287, 323, 382, 647, 985, 1081
Hpy166II	GTNNAC	5 cut(s)	369, 427, 818, 983, 1129
Hpy188I	TCNGA	6 cut(s)	150, 277, 793, 1009, 1102, 1297
Hpy188III	TCNNGA	5 cut(s)	501, 679, 860, 929, 1246
Hpy8I	GTNNAC	5 cut(s)	369, 427, 818, 983, 1129
HpyAV	CCTTC	5 cut(s)	168, 213, 300, 932, 1283
HpyCH4III	ACNGT	4 cut(s)	701, 758, 1106, 1126
HpyCH4IV	ACGT	3 cut(s)	50, 448, 976
HpyCH4V	TGCA	5 cut(s)	82, 465, 766, 871, 1232
HpyF10VI	GCNNNNNNNGC	3 cut(s)	88, 951, 1183
HpyF3I	CTNAG	6 cut(s)	147, 276, 792, 1062, 1074, 1311
HpySE526I	ACGT	3 cut(s)	50, 448, 976
Hsp92I	GRCGYC	1 cut(s)	50
Hsp92II	CATG	3 cut(s)	446, 716, 958
HspAI	GCGC	1 cut(s)	1147
Kzo9I	GATC	4 cut(s)	32, 409, 931, 1220
LmnI	GCTCC	3 cut(s)	577, 604, 894
Lsp1109I	GCAGC	2 cut(s)	4, 1216
LweI	GCATC	2 cut(s)	447, 721
MabI	ACCWGGT	1 cut(s)	995
MaeI	CTAG	4 cut(s)	60, 860, 962, 1016
MaeII	ACGT	3 cut(s)	50, 448, 976
MaeIII	GTNAC	6 cut(s)	153, 566, 656, 893, 991, 1022
MalI	GATC	4 cut(s)	34, 411, 933, 1222
MboI	GATC	4 cut(s)	32, 409, 931, 1220
MboII	GAAGA	4 cut(s)	198, 516, 683, 1100
MhlI	GDGCHC	1 cut(s)	1068
MlsI	TGGCCA	1 cut(s)	1031
MluCI	AATT	6 cut(s)	40, 65, 196, 550, 619, 638
MluNI	TGGCCA	1 cut(s)	1031
MlyI	GAGTC	3 cut(s)	266, 850, 1263
MmeI	TCCRAC	2 cut(s)	697, 1032
Mox20I	TGGCCA	1 cut(s)	1031
MscI	TGGCCA	1 cut(s)	1031
MslI	CAYNNNNRTG	2 cut(s)	417, 1166
Msp20I	TGGCCA	1 cut(s)	1031
MspA1I	CMGCKG	1 cut(s)	1315
MspI	CCGG	3 cut(s)	581, 1093, 1281
MspR9I	CCNGG	6 cut(s)	633, 997, 1093, 1133, 1264, 1281
Mva1269I	GAATGC	1 cut(s)	768
MvaI	CCWGG	4 cut(s)	633, 997, 1133, 1264
MwoI	GCNNNNNNNGC	3 cut(s)	88, 951, 1183
NciI	CCSGG	2 cut(s)	1093, 1281
NdeII	GATC	4 cut(s)	32, 409, 931, 1220
NlaIII	CATG	3 cut(s)	446, 716, 958
NlaIV	GGNNCC	2 cut(s)	579, 890
NmuCI	GTSAC	4 cut(s)	153, 893, 991, 1022
NspI	RCATGY	1 cut(s)	716
PciI	ACATGT	1 cut(s)	712
PctI	GAATGC	1 cut(s)	768
PfeI	GAWTC	2 cut(s)	788, 1328
PfoI	TCCNGGA	1 cut(s)	1279
PkrI	GCNGC	3 cut(s)	19, 22, 1231
PleI	GAGTC	3 cut(s)	266, 850, 1262
PpsI	GAGTC	3 cut(s)	266, 850, 1262
PscI	ACATGT	1 cut(s)	712
Psp124BI	GAGCTC	1 cut(s)	1068
Psp6I	CCWGG	4 cut(s)	631, 995, 1131, 1262
PspEI	GGTNACC	1 cut(s)	991
PspFI	CCCAGC	1 cut(s)	1143
PspGI	CCWGG	4 cut(s)	631, 995, 1131, 1262
PspN4I	GGNNCC	2 cut(s)	579, 890
PspPI	GGNCC	2 cut(s)	251, 287
PstI	CTGCAG	1 cut(s)	84
PvuII	CAGCTG	1 cut(s)	1315
RsaI	GTAC	1 cut(s)	1271
RsaNI	GTAC	1 cut(s)	1270
RseI	CAYNNNNRTG	2 cut(s)	417, 1166
SacI	GAGCTC	1 cut(s)	1068
SatI	GCNGC	3 cut(s)	18, 21, 1230
Sau3AI	GATC	4 cut(s)	32, 409, 931, 1220
Sau96I	GGNCC	2 cut(s)	251, 287
SchI	GAGTC	3 cut(s)	266, 850, 1263
ScrFI	CCNGG	6 cut(s)	633, 997, 1093, 1133, 1264, 1281
SduI	GDGCHC	1 cut(s)	1068
SexAI	ACCWGGT	1 cut(s)	995
SfaNI	GCATC	2 cut(s)	447, 721
SfcI	CTRYAG	1 cut(s)	80
SmiMI	CAYNNNNRTG	2 cut(s)	417, 1166
SmlI	CTYRAG	3 cut(s)	358, 608, 986
SmoI	CTYRAG	3 cut(s)	358, 608, 986
Sse9I	AATT	6 cut(s)	40, 65, 196, 550, 619, 638
SsiI	CCGC	3 cut(s)	21, 404, 883
SspMI	CTAG	4 cut(s)	60, 860, 962, 1016
SstI	GAGCTC	1 cut(s)	1068
StyD4I	CCNGG	6 cut(s)	631, 995, 1091, 1131, 1262, 1279
StyI	CCWWGG	1 cut(s)	433
TaaI	ACNGT	4 cut(s)	701, 758, 1106, 1126
TaiI	ACGT	3 cut(s)	53, 451, 979
TaqI	TCGA	3 cut(s)	678, 831, 1068
TasI	AATT	6 cut(s)	40, 65, 196, 550, 619, 638
TauI	GCSGC	1 cut(s)	23
TfiI	GAWTC	2 cut(s)	788, 1328
TscAI	CASTG	3 cut(s)	84, 763, 1027
TseFI	GTSAC	4 cut(s)	153, 893, 991, 1022
TseI	GCWGC	2 cut(s)	17, 1229
Tsp45I	GTSAC	4 cut(s)	153, 893, 991, 1022
TspDTI	ATGAA	8 cut(s)	123, 459, 756, 866, 971, 1100, 1314, 1320
TspGWI	ACGGA	1 cut(s)	881
TspRI	CASTG	3 cut(s)	84, 763, 1027
XapI	RAATTY	3 cut(s)	40, 65, 619
XbaI	TCTAGA	1 cut(s)	859
XceI	RCATGY	1 cut(s)	716
XspI	CTAG	4 cut(s)	60, 860, 962, 1016
ZraI	GACGTC	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.